NO02G04730.1, NO02G04730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04730.1
Unique NameNO02G04730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length969
Alignment locationchr2:1280752..1281810 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1280752..1281810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G04730.1 vs.
Match: EWM30190.1 (hypothetical protein Naga_100090g16 [Nannochloropsis gaditana])

HSP 1 Score: 516.9 bits (1330), Expect = 4.400e-143
Identity = 254/326 (77.91%), Postives = 281/326 (86.20%), Query Frame = 0
Query:    1 MLSSFIQQLEKRFGGRLADLVRPKPIITSSSLEREHLDELFSHRACCVHVQGFYPPQAAKEIARRLTLDPNRQLEWKVSNPQKGLESSDVRTIGSQPYNMVASSRNKAAEEAYFDGALACMRELREGSGSSFPCTTSSRD----GQSQKPTPELPVLGPLDKLRLELDEIFPAGATVAKHPKDGRPFVAGLARVMQGPTQHLEGFIHCDDIHPLSADEGLFSANLYLELPSTGGGELLIYDIEVRSRWEFYTNASTLALLTHPGEAGQDILRSRLPKPKTIKPASGDLILLCAQRPHAVAGFPLGTRVSIQSFISFKKGQSLQLDN 323
            ML+  +   EK FGGR+ DL+R KPIIT+++L+REHL+EL +HR CCVH+QGFYPP+AAK IA+RLT DP+RQLEW +SNPQKGLESSDVRTIGSQPYNMVAS R+K AE+AYFDGALACMRELREG         SSRD    G+  +    LPVLGPLDKLRLELDEIFP GATV KHPKDGRPFVAGLARVMQGPT+HLEGFIHCDDIHPLS DEGLFSANLYL+LP TGGGELLIYD+EVRSR+EFY NASTLALLT  GEAGQDILR+RLPKPK IKP +GDLIL+CAQRPHAVAGFPLGTRVSIQSFIS KKG+ LQLDN
Sbjct:    1 MLTRAVHLFEKHFGGRIQDLIRQKPIITATNLKREHLEELLAHRTCCVHIQGFYPPEAAKGIAQRLTRDPSRQLEWLISNPQKGLESSDVRTIGSQPYNMVASLRDKKAEKAYFDGALACMRELREG--------ISSRDAGLAGEGAEHASTLPVLGPLDKLRLELDEIFPQGATVTKHPKDGRPFVAGLARVMQGPTRHLEGFIHCDDIHPLSPDEGLFSANLYLQLPGTGGGELLIYDLEVRSRFEFYQNASTLALLTTAGEAGQDILRARLPKPKMIKPVAGDLILICAQRPHAVAGFPLGTRVSIQSFISHKKGKPLQLDN 318          
The following BLAST results are available for this feature:
BLAST of NO02G04730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30190.14.400e-14377.91hypothetical protein Naga_100090g16 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04730NO02G04730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04730.1NO02G04730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04730.1.cds1NO02G04730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04730.1.cds2NO02G04730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04730.1 ID=NO02G04730.1|Name=NO02G04730.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
ATGCTGTCCAGCTTCATCCAGCAGCTTGAGAAGCGATTCGGTGGTCGTTT
GGCTGACTTGGTGCGACCAAAACCCATCATCACGTCTTCGAGCCTAGAAC
GAGAGCACTTGGACGAGTTGTTTAGCCATCGTGCCTGTTGTGTCCATGTT
CAGGGATTCTACCCTCCCCAGGCCGCCAAAGAAATTGCGCGTCGCTTGAC
TCTGGACCCAAACCGGCAGCTGGAATGGAAAGTGAGTAATCCTCAAAAGG
GTTTGGAAAGCTCCGACGTCCGGACGATTGGCTCGCAGCCATACAACATG
GTCGCGTCTTCAAGAAACAAGGCGGCAGAAGAGGCATATTTTGACGGGGC
GTTGGCGTGCATGCGGGAACTTCGGGAGGGCAGTGGCAGCAGCTTTCCTT
GCACAACCAGCAGCAGGGACGGACAAAGCCAAAAGCCAACCCCAGAGCTT
CCAGTGCTTGGCCCCTTAGATAAACTACGACTAGAACTCGACGAAATTTT
TCCTGCCGGTGCTACCGTAGCTAAACATCCAAAAGACGGCCGACCATTCG
TGGCTGGCCTCGCGCGTGTCATGCAAGGCCCAACCCAACATCTTGAAGGG
TTTATTCACTGCGATGATATTCATCCCCTCTCAGCCGATGAAGGTCTCTT
CAGTGCAAATCTCTACCTAGAACTTCCGTCCACAGGAGGCGGTGAACTCT
TGATTTATGATATTGAAGTACGCTCGCGTTGGGAATTTTATACGAACGCC
AGCACTCTCGCTCTCCTGACGCACCCGGGAGAAGCAGGCCAAGATATTCT
CCGATCACGATTGCCCAAACCCAAGACCATCAAACCTGCATCTGGTGATT
TGATTTTACTATGTGCCCAGCGACCGCACGCCGTGGCGGGGTTTCCCCTC
GGGACGCGCGTCAGCATCCAATCTTTCATATCGTTCAAGAAGGGTCAGTC
GCTGCAGCTTGACAATTGA
back to top

protein sequence of NO02G04730.1

>NO02G04730.1-protein ID=NO02G04730.1-protein|Name=NO02G04730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MLSSFIQQLEKRFGGRLADLVRPKPIITSSSLEREHLDELFSHRACCVHV
QGFYPPQAAKEIARRLTLDPNRQLEWKVSNPQKGLESSDVRTIGSQPYNM
VASSRNKAAEEAYFDGALACMRELREGSGSSFPCTTSSRDGQSQKPTPEL
PVLGPLDKLRLELDEIFPAGATVAKHPKDGRPFVAGLARVMQGPTQHLEG
FIHCDDIHPLSADEGLFSANLYLELPSTGGGELLIYDIEVRSRWEFYTNA
STLALLTHPGEAGQDILRSRLPKPKTIKPASGDLILLCAQRPHAVAGFPL
GTRVSIQSFISFKKGQSLQLDN*
back to top

mRNA from alignment at chr2:1280752..1281810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04730.1 ID=NO02G04730.1|Name=NO02G04730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at chr2:1280752..1281810- (Nannochloropsis oceanica)
ATGCTGTCCAGCTTCATCCAGCAGCTTGAGAAGCGATTCGGTGGTCGTTT GGCTGACTTGGTGCGACCAAAACCCATCATCACGTCTTCGAGCCTAGAAC GAGAGCACTTGGACGAGGTAGGCCAGAGTGGATGGATTACAGATACGTTA ACCCATCATCCACACGTCAGTCATCTGATATCATACCCGCCCCACACATG TACACAGTTGTTTAGCCATCGTGCCTGTTGTGTCCATGTTCAGGGATTCT ACCCTCCCCAGGCCGCCAAAGAAATTGCGCGTCGCTTGACTCTGGACCCA AACCGGCAGCTGGAATGGAAAGTGAGTAATCCTCAAAAGGGTTTGGAAAG CTCCGACGTCCGGACGATTGGCTCGCAGCCATACAACATGGTCGCGTCTT CAAGAAACAAGGCGGCAGAAGAGGCATATTTTGACGGGGCGTTGGCGTGC ATGCGGGAACTTCGGGAGGGCAGTGGCAGCAGCTTTCCTTGCACAACCAG CAGCAGGGACGGACAAAGCCAAAAGCCAACCCCAGAGCTTCCAGTGCTTG GCCCCTTAGATAAACTACGACTAGAACTCGACGAAATTTTTCCTGCCGGT GCTACCGTAGCTAAACATCCAAAAGACGGCCGACCATTCGTGGCTGGCCT CGCGCGTGTCATGCAAGGCCCAACCCAACATCTTGAAGGGTTTATTCACT GCGATGATATTCATCCCCTCTCAGCCGATGAAGGTCTCTTCAGTGCAAAT CTCTACCTAGAACTTCCGTCCACAGGAGGCGGTGAACTCTTGATTTATGA TATTGAAGTACGCTCGCGTTGGGAATTTTATACGAACGCCAGCACTCTCG CTCTCCTGACGCACCCGGGAGAAGCAGGCCAAGATATTCTCCGATCACGA TTGCCCAAACCCAAGACCATCAAACCTGCATCTGGTGATTTGATTTTACT ATGTGCCCAGCGACCGCACGCCGTGGCGGGGTTTCCCCTCGGGACGCGCG TCAGCATCCAATCTTTCATATCGTTCAAGAAGGGTCAGTCGCTGCAGCTT GACAATTGA
back to top

Coding sequence (CDS) from alignment at chr2:1280752..1281810-

>NO02G04730.1 ID=NO02G04730.1|Name=NO02G04730.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr2:1280752..1281810- (Nannochloropsis oceanica)
ATGCTGTCCAGCTTCATCCAGCAGCTTGAGAAGCGATTCGGTGGTCGTTT
GGCTGACTTGGTGCGACCAAAACCCATCATCACGTCTTCGAGCCTAGAAC
GAGAGCACTTGGACGAGTTGTTTAGCCATCGTGCCTGTTGTGTCCATGTT
CAGGGATTCTACCCTCCCCAGGCCGCCAAAGAAATTGCGCGTCGCTTGAC
TCTGGACCCAAACCGGCAGCTGGAATGGAAAGTGAGTAATCCTCAAAAGG
GTTTGGAAAGCTCCGACGTCCGGACGATTGGCTCGCAGCCATACAACATG
GTCGCGTCTTCAAGAAACAAGGCGGCAGAAGAGGCATATTTTGACGGGGC
GTTGGCGTGCATGCGGGAACTTCGGGAGGGCAGTGGCAGCAGCTTTCCTT
GCACAACCAGCAGCAGGGACGGACAAAGCCAAAAGCCAACCCCAGAGCTT
CCAGTGCTTGGCCCCTTAGATAAACTACGACTAGAACTCGACGAAATTTT
TCCTGCCGGTGCTACCGTAGCTAAACATCCAAAAGACGGCCGACCATTCG
TGGCTGGCCTCGCGCGTGTCATGCAAGGCCCAACCCAACATCTTGAAGGG
TTTATTCACTGCGATGATATTCATCCCCTCTCAGCCGATGAAGGTCTCTT
CAGTGCAAATCTCTACCTAGAACTTCCGTCCACAGGAGGCGGTGAACTCT
TGATTTATGATATTGAAGTACGCTCGCGTTGGGAATTTTATACGAACGCC
AGCACTCTCGCTCTCCTGACGCACCCGGGAGAAGCAGGCCAAGATATTCT
CCGATCACGATTGCCCAAACCCAAGACCATCAAACCTGCATCTGGTGATT
TGATTTTACTATGTGCCCAGCGACCGCACGCCGTGGCGGGGTTTCCCCTC
GGGACGCGCGTCAGCATCCAATCTTTCATATCGTTCAAGAAGGGTCAGTC
GCTGCAGCTTGACAATTGA
back to top
Synonyms
Publications