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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1243096..1244663 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04600.1 vs.
Match: EWM30250.1 (Cytochrome c/c1 heme-lyase [Nannochloropsis gaditana]) HSP 1 Score: 514.6 bits (1324), Expect = 3.100e-142 Identity = 283/457 (61.93%), Postives = 330/457 (72.21%), Query Frame = 0
Query: 1 MGNAQGGGKGGGGGSDIPIP-AGAGGAASSSGGCPIKGKSASS-AITPAASAAAAPGCPVKGKSESKAMTGTVYNVYSQPIDPTNQMPANANNKPAPGQMAPLSTDRVSSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGATEEDMAVVVAIHNNMNENTWRKVCEWEALHAPPSAGTSVADDNEASDPRLSRFLGKPDDISPKARFKSLFGHPLPFDRHDWVIQRPDGTEVRYIIDYYHDDVAAKENRIPQGLHDEKAVKSISVDVRPALDSVHAIIDRGVRMPISRAAGNSPFQPLPFFWAGSKDTKGGHSDGTKNQIAEAAAAPATAFAAVASGAATTKVAAAAAALPVAPAGCGKQEEILDLTALSKQVRLSCAEHFAALQRCKDEADCARTAVALSYCMGSLLCKPETAAFDQAMAAPGSGDKHDAVIEAAFGRMRTCLDGFESKAGKER 456
MGN GG KG G ++ P P G GA+S+ GCP+K ++ S + +P + + GCPVK K+ S+ +T VYNVY+QPIDPTNQMPANANNKPAPGQ+ PLSTDRV SRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGA EEDM VVVAIHNNMNENTWRKV EWEAL++ A +EA+ PRLSRFLG+PD++SPKA FKSLFGHPLPFDRHDWVIQR DGTEVRY+IDYYHDD AAKEN++P+ L D +VKSISVDVRPALDSVHA +DRG+RMPI+ AG++ FQPLPFFW G KD G V G A K A V G K ++L+A+S+QV SCAE+FAA+Q C DEA CAR AV LSYCMG LLCK E AAFD+A+ A G D+HD +EAAF RM+ CLD FE++A K R
Sbjct: 1 MGNTHGG-KGASGSTEAPFPDRGDLGASSAGTGCPVKSRNKSPISESPLPPPSDSSGCPVKSKAGSEGLT--VYNVYAQPIDPTNQMPANANNKPAPGQITPLSTDRVVSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGANEEDMDVVVAIHNNMNENTWRKVLEWEALNSSSPLQMDPAHSDEANTPRLSRFLGRPDELSPKAWFKSLFGHPLPFDRHDWVIQRQDGTEVRYVIDYYHDDAAAKENQVPKDLVDANSVKSISVDVRPALDSVHAFVDRGMRMPINLVAGSTHFQPLPFFWTGGKDPAVG------------------GLGRVGPGVAPFKHMANVGG--VEKEGSNK---AMELSAISRQVHDSCAENFAAMQACTDEASCARAAVKLSYCMGGLLCKKEAAAFDEAVGALGQMDEHDEAVEAAFARMQRCLDDFEAEAQKSR 431
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04600.1 ID=NO02G04600.1|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp CGCAAAAAACCTCCCCACCCACCGAACATAACTCGTTGAACGCCACGCAC GCACTTCATTCCACGCCATCCCCTTGGCCAGCACATGCCAGATACCTCAC AGCGCACATACATAACGCCACGTAGACAAGCATGGGCAATGCACAAGGTG GTGGCAAGGGAGGAGGCGGCGGGAGCGACATTCCCATTCCAGCAGGCGCA GGGGGAGCAGCATCGTCATCAGGCGGCTGTCCGATCAAAGGCAAGTCCGC GTCTTCCGCCATAACACCCGCTGCGTCCGCTGCTGCAGCGCCCGGATGCC CCGTCAAAGGCAAGAGTGAGAGCAAGGCGATGACAGGAACGGTCTACAAC GTGTATAGCCAGCCCATTGACCCCACAAACCAAATGCCTGCCAACGCCAA CAACAAACCCGCCCCTGGCCAGATGGCGCCCCTGAGCACGGACCGGGTGT CCTCGCGCATCCCCAAGGGTGGCACCGAGGCTGAGACATGGACATACCCC AGCCCACAAATGTTCTGGAACGCTCTGGTTCGGAAAGGTAAGGCGGAAGG GGCGACGGAGGAGGATATGGCGGTAGTGGTGGCTATTCACAACAACATGA ACGAGAATACCTGGCGCAAGGTCTGTGAGTGGGAAGCGCTCCACGCCCCC CCTTCAGCTGGAACCAGCGTTGCGGATGACAATGAGGCATCTGATCCCCG CCTTTCTCGATTTTTGGGGAAGCCTGACGATATCTCCCCGAAGGCACGGT TTAAGAGTTTGTTTGGTCACCCCCTGCCTTTCGATCGACACGATTGGGTC ATTCAACGACCTGACGGAACCGAAGTTCGCTACATCATCGATTACTACCA CGACGACGTCGCAGCGAAGGAAAACCGAATCCCTCAGGGGCTGCATGATG AGAAGGCTGTGAAATCTATTTCTGTCGATGTGCGACCGGCCCTGGATTCG GTACATGCAATTATAGACCGAGGGGTGCGCATGCCCATCAGTCGCGCTGC GGGCAACTCGCCCTTTCAGCCATTGCCATTTTTTTGGGCCGGCAGCAAGG ACACGAAAGGTGGGCATAGTGATGGAACCAAAAATCAGATTGCCGAGGCG GCAGCTGCGCCTGCTACGGCCTTTGCTGCAGTTGCTTCTGGGGCAGCGAC GACGAAAGTTGCCGCTGCCGCTGCTGCGCTTCCTGTCGCTCCAGCTGGTT GTGGAAAGCAGGAAGAAATTTTAGACTTGACGGCATTATCGAAACAAGTA CGTCTATCGTGCGCGGAGCATTTTGCAGCGTTGCAAAGATGTAAGGACGA GGCAGACTGCGCGAGGACCGCTGTGGCCTTGTCGTACTGTATGGGTAGTT TGTTATGTAAACCAGAAACGGCAGCCTTTGACCAAGCGATGGCGGCACCA GGGAGTGGAGACAAGCATGATGCGGTGATTGAGGCGGCGTTTGGGAGGAT GAGGACATGTTTAGATGGGTTTGAGAGTAAGGCAGGGAAAGAGAGGGCGG AAGGGGGACAAAGATAAGAGAGTATCAAGTGTGTGAAAAATCACCAAGAA ATGTCCATAAACCCCCCT back to topprotein sequence of NO02G04600.1 >NO02G04600.1-protein ID=NO02G04600.1-protein|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp MGNAQGGGKGGGGGSDIPIPAGAGGAASSSGGCPIKGKSASSAITPAASA AAAPGCPVKGKSESKAMTGTVYNVYSQPIDPTNQMPANANNKPAPGQMAP LSTDRVSSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGATEEDMAVVV AIHNNMNENTWRKVCEWEALHAPPSAGTSVADDNEASDPRLSRFLGKPDD ISPKARFKSLFGHPLPFDRHDWVIQRPDGTEVRYIIDYYHDDVAAKENRI PQGLHDEKAVKSISVDVRPALDSVHAIIDRGVRMPISRAAGNSPFQPLPF FWAGSKDTKGGHSDGTKNQIAEAAAAPATAFAAVASGAATTKVAAAAAAL PVAPAGCGKQEEILDLTALSKQVRLSCAEHFAALQRCKDEADCARTAVAL SYCMGSLLCKPETAAFDQAMAAPGSGDKHDAVIEAAFGRMRTCLDGFESK AGKERAEGGQR* back to topmRNA from alignment at chr2:1243096..1244663- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04600.1 ID=NO02G04600.1|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp|location=Sequence derived from alignment at chr2:1243096..1244663- (Nannochloropsis oceanica) CGCAAAAAACCTCCCCACCCACCGAACATAACTCGTTGAACGCCACGCAC
GCACTTCATTCCACGCCATCCCCTTGGCCAGCACATGCCAGATACCTCAC
AGCGCACATACATAACGCCACGTAGACAAGCATGGGCAATGCACAAGGTG
GTGGCAAGGGAGGAGGCGGCGGGAGCGACATTCCCATTCCAGCAGGCGCA
GGGGGAGCAGCATCGTCATCAGGCGGCTGTCCGATCAAAGGCAAGTCCGC
GTCTTCCGCCATAACACCCGCTGCGTCCGCTGCTGCAGCGCCCGGATGCC
CCGTCAAAGGCAAGAGTGAGAGCAAGGCGATGACAGGAACGGTCTACAAC
GTGTATAGCCAGCCCATTGACCCCACAAACCAAATGCCTGCCAACGCCAA
CAACAAACCCGCCCCTGGCCAGATGGCGCCCCTGAGCACGGACCGGGTGT
CCTCGCGCATCCCCAAGGGTGGCACCGAGGCTGAGACATGGACATACCCC
AGCCCACAAATGTTCTGGAACGCTCTGGTTCGGAAAGGTAAGGCGGAAGG
GGCGACGGAGGAGGATATGGCGGTAGTGGTGGCTATTCACAACAACATGA
ACGAGAATACCTGGCGCAAGGTCTGTGAGTGGGAAGCGCTCCACGCCCCC
CCTTCAGCTGGAACCAGCGTTGCGGATGACAATGAGGCATCTGATCCCCG
CCTTTCTCGATTTTTGGGGAAGCCTGACGATATCTCCCCGAAGGCACGGT
TTAAGAGTTTGTTTGGTCACCCCCTGCCTTTCGATCGACACGATTGGGTC
ATTCAACGACCTGACGGAACCGAAGTTCGCTACATCATCGATTACTACCA
CGACGACGTCGCAGCGAAGGAAAACCGAATCCCTCAGGGGCTGCATGATG
AGAAGGCTGTGAAATCTATTTCTGTCGATGTGCGACCGGCCCTGGATTCG
GTACATGCAATTATAGACCGAGGGGTGCGCATGCCCATCAGTCGCGCTGC
GGGCAACTCGCCCTTTCAGCCATTGCCATTTTTTTGGGCCGGCAGCAAGG
ACACGAAAGGTGGGCATAGTGATGGAACCAAAAATCAGATTGCCGAGGCG
GCAGCTGCGCCTGCTACGGCCTTTGCTGCAGTTGCTTCTGGGGCAGCGAC
GACGAAAGTTGCCGCTGCCGCTGCTGCGCTTCCTGTCGCTCCAGCTGGTT
GTGGAAAGCAGGAAGAAATTTTAGACTTGACGGCATTATCGAAACAAGTA
CGTCTATCGTGCGCGGAGCATTTTGCAGCGTTGCAAAGATGTAAGGACGA
GGCAGACTGCGCGAGGACCGCTGTGGCCTTGTCGTACTGTATGGGTAGTT
TGTTATGTAAACCAGAAACGGCAGCCTTTGACCAAGCGATGGCGGCACCA
GGGAGTGGAGACAAGCATGATGCGGTGATTGAGGCGGCGTTTGGGAGGAT
GAGGACATGTTTAGATGGGTTTGAGAGTAAGGCAGGGAAAGAGAGGGCGG
AAGGGGGACAAAGATAAGAGAGTATCAAGTGTGTGAAAAATCACCAAGAA
ATGTCCATAAACCCCCCT back to topCoding sequence (CDS) from alignment at chr2:1243096..1244663- >NO02G04600.1 ID=NO02G04600.1|Name=NO02G04600.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr2:1243096..1244663- (Nannochloropsis oceanica) ATGGGCAATGCACAAGGTGGTGGCAAGGGAGGAGGCGGCGGGAGCGACAT TCCCATTCCAGCAGGCGCAGGGGGAGCAGCATCGTCATCAGGCGGCTGTC CGATCAAAGGCAAGTCCGCGTCTTCCGCCATAACACCCGCTGCGTCCGCT GCTGCAGCGCCCGGATGCCCCGTCAAAGGCAAGAGTGAGAGCAAGGCGAT GACAGGAACGGTCTACAACGTGTATAGCCAGCCCATTGACCCCACAAACC AAATGCCTGCCAACGCCAACAACAAACCCGCCCCTGGCCAGATGGCGCCC CTGAGCACGGACCGGGTGTCCTCGCGCATCCCCAAGGGTGGCACCGAGGC TGAGACATGGACATACCCCAGCCCACAAATGTTCTGGAACGCTCTGGTTC GGAAAGGTAAGGCGGAAGGGGCGACGGAGGAGGATATGGCGGTAGTGGTG GCTATTCACAACAACATGAACGAGAATACCTGGCGCAAGGTCTGTGAGTG GGAAGCGCTCCACGCCCCCCCTTCAGCTGGAACCAGCGTTGCGGATGACA ATGAGGCATCTGATCCCCGCCTTTCTCGATTTTTGGGGAAGCCTGACGAT ATCTCCCCGAAGGCACGGTTTAAGAGTTTGTTTGGTCACCCCCTGCCTTT CGATCGACACGATTGGGTCATTCAACGACCTGACGGAACCGAAGTTCGCT ACATCATCGATTACTACCACGACGACGTCGCAGCGAAGGAAAACCGAATC CCTCAGGGGCTGCATGATGAGAAGGCTGTGAAATCTATTTCTGTCGATGT GCGACCGGCCCTGGATTCGGTACATGCAATTATAGACCGAGGGGTGCGCA TGCCCATCAGTCGCGCTGCGGGCAACTCGCCCTTTCAGCCATTGCCATTT TTTTGGGCCGGCAGCAAGGACACGAAAGGTGGGCATAGTGATGGAACCAA AAATCAGATTGCCGAGGCGGCAGCTGCGCCTGCTACGGCCTTTGCTGCAG TTGCTTCTGGGGCAGCGACGACGAAAGTTGCCGCTGCCGCTGCTGCGCTT CCTGTCGCTCCAGCTGGTTGTGGAAAGCAGGAAGAAATTTTAGACTTGAC GGCATTATCGAAACAAGTACGTCTATCGTGCGCGGAGCATTTTGCAGCGT TGCAAAGATGTAAGGACGAGGCAGACTGCGCGAGGACCGCTGTGGCCTTG TCGTACTGTATGGGTAGTTTGTTATGTAAACCAGAAACGGCAGCCTTTGA CCAAGCGATGGCGGCACCAGGGAGTGGAGACAAGCATGATGCGGTGATTG AGGCGGCGTTTGGGAGGATGAGGACATGTTTAGATGGGTTTGAGAGTAAG GCAGGGAAAGAGAGGGCGGAAGGGGGACAAAGATAA back to top
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