NO02G04590.1, NO02G04590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04590.1
Unique NameNO02G04590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr2:1241432..1242700 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1241432..1242700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04590.1 vs.
Match: EWM30338.1 (phosphatidate cytidylyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 614.4 bits (1583), Expect = 2.700e-172
Identity = 320/416 (76.92%), Postives = 351/416 (84.38%), Query Frame = 0 
Query:    1 MPRRQMLAVAA-AASCFCLAAAFVQQSSLPSLHLSTGRVADHFSMPVRSRVAAFPVRITKLPTMINSNFDSLQPGITAPSSSSSTFAPPASGVVSAKVSTPSAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILTKFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRIA 416
            M RR +LAV A AASC C A A+VQ S LPS      R +    +P   R   FP        + ++  D LQPGITAP+SS++ F PP+SG+V    +T +   PKKKGSLQTRI TGIVLGALATYWVFGGKWVFM+GFLVQAI AQREYYRMC KAG TP+RRISFVSTLLMY+IAC +P YHEMVLPL GTAVMIWLL+MRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFA+IL K WP+WIPL LIPDP+MWTEGAIVIWWTYLTIIC+DIGA+ATGKT GR KLST+STAAG TSPNKTVEG+LGGFVSAT VAT+MSRLLNWPLWWLSGPAYGLMLGV+ALVGDLTASMFKRDAG+KDSGGLLPGHGGILDRIDSFMFTGP A+LFV V LP+ARRIA
Sbjct:    1 MARRPILAVMAMAASCCCRAIAYVQPS-LPSNLRPRCRPS---GLPSHLRSVRFPSGRRSTSFLQSAYLDGLQPGITAPTSSTA-FTPPSSGIVVTSDATSAPTRPKKKGSLQTRIATGIVLGALATYWVFGGKWVFMAGFLVQAIFAQREYYRMCIKAGVTPSRRISFVSTLLMYVIACHVPFYHEMVLPLAGTAVMIWLLLMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFASILAKVWPSWIPLRLIPDPEMWTEGAIVIWWTYLTIICADIGAYATGKTLGRTKLSTLSTAAGATSPNKTVEGLLGGFVSATVVATLMSRLLNWPLWWLSGPAYGLMLGVIALVGDLTASMFKRDAGLKDSGGLLPGHGGILDRIDSFMFTGPFAYLFVLVVLPLARRIA 411
The following BLAST results are available for this feature:
BLAST of NO02G04590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30338.12.700e-17276.92phosphatidate cytidylyltransferase [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04590NO02G04590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04590.1NO02G04590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04590.1.cds1NO02G04590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04590.1 ID=NO02G04590.1|Name=NO02G04590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
ATGCCGCGGCGTCAGATGTTGGCGGTGGCAGCCGCAGCCTCGTGCTTTTG
CCTGGCAGCGGCCTTCGTGCAGCAGTCTTCCTTGCCCTCCTTGCACTTGT
CGACAGGCCGGGTCGCGGACCACTTCTCCATGCCAGTCCGCTCAAGAGTA
GCAGCATTTCCTGTACGCATAACGAAGTTACCGACAATGATAAACTCGAA
CTTCGATAGCTTGCAGCCCGGGATCACAGCTCCATCGTCTTCCTCCTCTA
CCTTTGCCCCTCCTGCCTCGGGCGTTGTCTCCGCCAAAGTCTCGACACCC
AGCGCCGCCACGCCAAAGAAAAAGGGAAGCTTGCAGACGAGGATCCTCAC
GGGGATAGTGCTTGGAGCATTGGCGACGTATTGGGTATTTGGTGGAAAGT
GGGTCTTTATGTCGGGCTTTCTTGTGCAAGCTATCTTGGCCCAACGCGAG
TACTACAGGATGTGTTCCAAGGCCGGGGCGACGCCTGCCCGTCGGATCAG
CTTTGTCAGTACCTTGCTTATGTACATCATTGCGTGTCAAATACCCGCAT
ATCACGAGATGGTCTTGCCTTTGGGAGGGACCGCAGTCATGATTTGGTTG
CTGATGATGCGGAAGGCCCCGGCAAAAATTACGGAGGTCTCCACAACCAT
TCTGGGGATGTTTTACATTGGTTATCTCCCGTCGTTTTGGATCCGTTTGC
GTGCCTTAGGCGATGTAATGCCCAGCACATTTGCCACAATTTTGACGAAA
TTTTGGCCGGCGTGGATTCCCTTGCATTTGATTCCTGACCCGCAGATGTG
GACGGAAGGAGCGATAGTGATTTGGTGGACATACCTAACAATTATTTGTT
CTGATATTGGGGCGTTTGCCACGGGAAAGACGTTTGGGAGGAATAAATTG
TCGACCGTGAGTACGGCTGCGGGACAAACATCACCGAATAAGACGGTGGA
GGGCGTGCTGGGGGGGTTTGTGAGTGCCACGGCCGTTGCAACGATCATGT
CGAGGTTGCTTAATTGGCCTTTATGGTGGCTGAGTGGTCCGGCGTACGGG
TTAATGCTGGGGGTTGTGGCGTTGGTAGGAGATTTGACTGCGTCGATGTT
CAAGCGGGACGCGGGGATGAAAGATTCGGGTGGGCTATTACCCGGTCACG
GGGGCATTTTGGATCGCATCGACTCGTTCATGTTCACGGGTCCTTGTGCG
TTTTTGTTTGTGAAGGTAGGCTTACCGGTGGCGAGGAGGATTGCGGTGAC
CAAGGGGTGGGGTGCCTAG
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protein sequence of NO02G04590.1

>NO02G04590.1-protein ID=NO02G04590.1-protein|Name=NO02G04590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MPRRQMLAVAAAASCFCLAAAFVQQSSLPSLHLSTGRVADHFSMPVRSRV
AAFPVRITKLPTMINSNFDSLQPGITAPSSSSSTFAPPASGVVSAKVSTP
SAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQRE
YYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWL
LMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILTK
FWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKL
STVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYG
LMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCA
FLFVKVGLPVARRIAVTKGWGA*
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mRNA from alignment at chr2:1241432..1242700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04590.1 ID=NO02G04590.1|Name=NO02G04590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at chr2:1241432..1242700+ (Nannochloropsis oceanica)
ATGCCGCGGCGTCAGATGTTGGCGGTGGCAGCCGCAGCCTCGTGCTTTTG
CCTGGCAGCGGCCTTCGTGCAGCAGTCTTCCTTGCCCTCCTTGCACTTGT
CGACAGGCCGGGTCGCGGACCACTTCTCCATGCCAGTCCGCTCAAGAGTA
GCAGCATTTCCTGTACGCATAACGAAGTTACCGACAATGATAAACTCGAA
CTTCGATAGCTTGCAGCCCGGGATCACAGCTCCATCGTCTTCCTCCTCTA
CCTTTGCCCCTCCTGCCTCGGGCGTTGTCTCCGCCAAAGTCTCGACACCC
AGCGCCGCCACGCCAAAGAAAAAGGGAAGCTTGCAGACGAGGATCCTCAC
GGGGATAGTGCTTGGAGCATTGGCGACGTATTGGGTATTTGGTGGAAAGT
GGGTCTTTATGTCGGGCTTTCTTGTGCAAGCTATCTTGGCCCAACGCGAG
TACTACAGGATGTGTTCCAAGGCCGGGGCGACGCCTGCCCGTCGGATCAG
CTTTGTCAGTACCTTGCTTATGTACATCATTGCGTGTCAAATACCCGCAT
ATCACGAGATGGTCTTGCCTTTGGGAGGGACCGCAGTCATGATTTGGTTG
CTGATGATGCGGAAGGCCCCGGCAAAAATTACGGAGGTCTCCACAACCAT
TCTGGGGATGTTTTACATTGGTTATCTCCCGTCGTTTTGGATCCGTTTGC
GTGCCTTAGGCGATGTAATGCCCAGCACATTTGCCACAATTTTGACGAAA
TTTTGGCCGGCGTGGATTCCCTTGCATTTGATTCCTGACCCGCAGATGTG
GACGGAAGGAGCGATAGTGATTTGGTGGACATACCTAACAATTATTTGTT
CTGATATTGGGGCGTTTGCCACGGGAAAGACGTTTGGGAGGAATAAATTG
TCGACCGTGAGTACGGCTGCGGGACAAACATCACCGAATAAGACGGTGGA
GGGCGTGCTGGGGGGGTTTGTGAGTGCCACGGCCGTTGCAACGATCATGT
CGAGGTTGCTTAATTGGCCTTTATGGTGGCTGAGTGGTCCGGCGTACGGG
TTAATGCTGGGGGTTGTGGCGTTGGTAGGAGATTTGACTGCGTCGATGTT
CAAGCGGGACGCGGGGATGAAAGATTCGGGTGGGCTATTACCCGGTCACG
GGGGCATTTTGGATCGCATCGACTCGTTCATGTTCACGGGTCCTTGTGCG
TTTTTGTTTGTGAAGGTAGGCTTACCGGTGGCGAGGAGGATTGCGGTGAC
CAAGGGGTGGGGTGCCTAG
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Coding sequence (CDS) from alignment at chr2:1241432..1242700+

>NO02G04590.1 ID=NO02G04590.1|Name=NO02G04590.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr2:1241432..1242700+ (Nannochloropsis oceanica)
ATGCCGCGGCGTCAGATGTTGGCGGTGGCAGCCGCAGCCTCGTGCTTTTG
CCTGGCAGCGGCCTTCGTGCAGCAGTCTTCCTTGCCCTCCTTGCACTTGT
CGACAGGCCGGGTCGCGGACCACTTCTCCATGCCAGTCCGCTCAAGAGTA
GCAGCATTTCCTGTACGCATAACGAAGTTACCGACAATGATAAACTCGAA
CTTCGATAGCTTGCAGCCCGGGATCACAGCTCCATCGTCTTCCTCCTCTA
CCTTTGCCCCTCCTGCCTCGGGCGTTGTCTCCGCCAAAGTCTCGACACCC
AGCGCCGCCACGCCAAAGAAAAAGGGAAGCTTGCAGACGAGGATCCTCAC
GGGGATAGTGCTTGGAGCATTGGCGACGTATTGGGTATTTGGTGGAAAGT
GGGTCTTTATGTCGGGCTTTCTTGTGCAAGCTATCTTGGCCCAACGCGAG
TACTACAGGATGTGTTCCAAGGCCGGGGCGACGCCTGCCCGTCGGATCAG
CTTTGTCAGTACCTTGCTTATGTACATCATTGCGTGTCAAATACCCGCAT
ATCACGAGATGGTCTTGCCTTTGGGAGGGACCGCAGTCATGATTTGGTTG
CTGATGATGCGGAAGGCCCCGGCAAAAATTACGGAGGTCTCCACAACCAT
TCTGGGGATGTTTTACATTGGTTATCTCCCGTCGTTTTGGATCCGTTTGC
GTGCCTTAGGCGATGTAATGCCCAGCACATTTGCCACAATTTTGACGAAA
TTTTGGCCGGCGTGGATTCCCTTGCATTTGATTCCTGACCCGCAGATGTG
GACGGAAGGAGCGATAGTGATTTGGTGGACATACCTAACAATTATTTGTT
CTGATATTGGGGCGTTTGCCACGGGAAAGACGTTTGGGAGGAATAAATTG
TCGACCGTGAGTACGGCTGCGGGACAAACATCACCGAATAAGACGGTGGA
GGGCGTGCTGGGGGGGTTTGTGAGTGCCACGGCCGTTGCAACGATCATGT
CGAGGTTGCTTAATTGGCCTTTATGGTGGCTGAGTGGTCCGGCGTACGGG
TTAATGCTGGGGGTTGTGGCGTTGGTAGGAGATTTGACTGCGTCGATGTT
CAAGCGGGACGCGGGGATGAAAGATTCGGGTGGGCTATTACCCGGTCACG
GGGGCATTTTGGATCGCATCGACTCGTTCATGTTCACGGGTCCTTGTGCG
TTTTTGTTTGTGAAGGTAGGCTTACCGGTGGCGAGGAGGATTGCGGTGAC
CAAGGGGTGGGGTGCCTAG
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Synonyms
Publications