NO02G04580.1, NO02G04580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04580.1
Unique NameNO02G04580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr2:1238997..1240795 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1238997..1240795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G04580.1 vs.
Match: EWM30249.1 (hypothetical protein Naga_100003g11 [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 2.000e-74
Identity = 165/241 (68.46%), Postives = 187/241 (77.59%), Query Frame = 0 
Query:    1 MQRLWTALALCSIMPGATAFVLPVTGPCMRETMTMKASLSSKSLSRADMLQSAGGALFGAAVLSTVAPQASNAESTLASRKVLYFRYAPRIKNARDYLATDFKSALAKKDWAAVAAAYEIQKQAPDSSMRSNPQRFTNKFERDLYSPMKIFSQSQSEKGASPKLAALLKAEGELEEALDRLQLVAKGDLKPIKKGGGGLFGFGGAEAPADKYTGMSQEKMANALYADAKTAFNAWVDVTNK 242
            M R+ T LAL   + G  AF  P     + +     A   S++L RAD+ + AG A  GAA+L    P+AS AE+TLASRKVLYFRYAPRIK+ARD+LA DFK+AL KKDWAAVAAAYEI+KQAPDSSMR+NPQRF NKFE+DLYSPM+IFSQS SEKGASPKL ALLKAEGELE ALDRLQLVAKGDLKP KK GG L GFGG     DKY G++QEKMA AL+ADAKTAFNAWV+V NK
Sbjct:   30 MLRVGTLLALGCSLLGTNAFTFPSMSCNVFQRHEKNAMKVSEALYRADVFRFAGSAFVGAALLIG-RPEASEAETTLASRKVLYFRYAPRIKSARDFLAKDFKAALDKKDWAAVAAAYEIEKQAPDSSMRNNPQRFINKFEKDLYSPMRIFSQSLSEKGASPKLTALLKAEGELEAALDRLQLVAKGDLKPPKKDGGFL-GFGGGAPVEDKYAGLNQEKMAKALFADAKTAFNAWVEVVNK 268
The following BLAST results are available for this feature:
BLAST of NO02G04580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30249.12.000e-7468.46hypothetical protein Naga_100003g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04580NO02G04580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04580.1NO02G04580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04580.1.cds1NO02G04580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04580.1.cds2NO02G04580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04580.1.cds3NO02G04580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04580.1.cds4NO02G04580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04580.1.cds5NO02G04580.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04580.1 ID=NO02G04580.1|Name=NO02G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGCAGCGCCTTTGGACTGCTTTGGCACTCTGCAGCATCATGCCTGGGGC
GACGGCATTCGTGTTGCCTGTGACCGGGCCGTGCATGCGCGAGACAATGA
CGATGAAGGCCTCTTTGTCTTCTAAGTCCTTGTCTCGGGCGGATATGCTC
CAATCGGCGGGCGGCGCCTTGTTTGGCGCGGCTGTCTTGTCAACGGTGGC
CCCGCAAGCGTCGAATGCTGAGAGCACACTGGCGTCCAGAAAGGTGTTAT
ACTTCCGGTACGCTCCCCGCATCAAGAATGCCCGCGATTACCTCGCCACT
GATTTTAAGTCGGCGTTGGCCAAGAAGGACTGGGCAGCCGTTGCTGCAGC
GTATGAGATCCAGAAACAGGCCCCGGACTCAAGCATGCGCTCCAATCCCC
AACGATTTACGAACAAGTTCGAGCGGGACCTCTACAGCCCCATGAAGATC
TTCTCCCAATCCCAAAGCGAAAAGGGCGCTTCGCCCAAGCTTGCGGCCTT
GCTGAAAGCCGAGGGTGAGTTGGAAGAAGCCTTGGATCGCTTGCAGCTCG
TTGCCAAGGGTGATTTGAAACCCATTAAGAAGGGGGGAGGAGGGCTGTTC
GGATTTGGGGGTGCGGAGGCGCCCGCTGATAAGTACACGGGGATGAGCCA
GGAGAAGATGGCGAATGCTTTGTATGCAGATGCAAAGACAGCATTCAATG
CGTGGGTGGATGTGACGAACAAAGCTATCATCGAGGTGAATAAGTTCGAG
CCGCTCCCTTAG
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protein sequence of NO02G04580.1

>NO02G04580.1-protein ID=NO02G04580.1-protein|Name=NO02G04580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MQRLWTALALCSIMPGATAFVLPVTGPCMRETMTMKASLSSKSLSRADML
QSAGGALFGAAVLSTVAPQASNAESTLASRKVLYFRYAPRIKNARDYLAT
DFKSALAKKDWAAVAAAYEIQKQAPDSSMRSNPQRFTNKFERDLYSPMKI
FSQSQSEKGASPKLAALLKAEGELEEALDRLQLVAKGDLKPIKKGGGGLF
GFGGAEAPADKYTGMSQEKMANALYADAKTAFNAWVDVTNKAIIEVNKFE
PLP*
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mRNA from alignment at chr2:1238997..1240795+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04580.1 ID=NO02G04580.1|Name=NO02G04580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at chr2:1238997..1240795+ (Nannochloropsis oceanica)
ATGCAGCGCCTTTGGACTGCTTTGGCACTCTGCAGCATCATGCCTGGGGC
GACGGCATTCGTGTTGCCTGTGACCGGGCCGTGCATGCGCGAGGTACGTG
TGTGTTGTAAAAAGCGAGGCAGGGGAGGGGTTGACGACGACGAATTGAAA
CTCGCCCCGCTAACAACTTGACCCTAAAGTACGCAAGCTACTTGATAAGG
CGTCATTGATTGCGCGATTATTAATGCATGAAAGCTTGCCCTTAACAGAT
CACTCCTTTCCAAAGCATTTAGCTTTGGTGATGACACAACCGTAAGTAGC
GACACCCGATACCAACCATCGACCATGTCCTCTCCCTCACCTTTTTACAG
ACAATGACGATGAAGGCCTCTTTGTCTTCTAAGTCCTTGTCTCGGGCGGA
TATGCTCCAATCGGCGGGCGGCGCCTTGTTTGGCGCGGCTGTCTTGTCAA
CGGTGGCCCCGCAAGCGTCGAATGCTGAGAGCACACTGGCGTCCAGAAAG
GTGTTATACTTCCGGGTAAGTCACGTTTCAATCTAGCTTGTGCCGTGTCT
AATCTGGGGAAGGCCTTGCTCTATTTGATGGCCCTGTCTGTCCAAGAGAG
TAGGGTGCTGTAAACTTCGCACGTTTGTATTGTTGCTCCCCGGCATGTTT
TTAAGCTATGGGTAAGTGGCAAAAGCAGGAACGCCTGCCCCGGTTATCTG
CCGGCTGATAATGCTGGATTGTGTGCTTGTGGCCTTGATCTGGGTGTGAT
TGACAAATGCTCGGTTGTTGCAGACGCAAATGTACATTTTCGTCGCGCTA
AGTTATTTATTCCTGTCATCCATACTGAAAAGCCTCCTAACTGACCATCC
CCTCCCTCCCTCCCTCCCTCCCCCCTTCCCTTCCTCCCTCTTCCCCTCTC
CAACCAGTACGCTCCCCGCATCAAGAATGCCCGCGATTACCTCGCCACTG
ATTTTAAGTCGGCGTTGGCCAAGAAGGACTGGGCAGCCGTTGCTGCAGCG
TATGAGATCCAGAAACAGGCCCCGGACTCAAGCATGCGCTCCAATCCCCA
ACGATTTACGAACAAGTTCGAGCGGTGAGGAAGGAGGGGGGACAGCTAGT
GAAGGAAGAATGGAGCGGGACACTTAATCGTTGCGATTGATGTCCAGATA
CCTTTATCCTTCTCGCTGGCAGGAACGCACGCTAACGCCGCACCCATGCG
TTCATCATATCCGCCTTTCTTTTTCCTCTCCAATCCATTCACACCCAACA
GGGACCTCTACAGCCCCATGAAGATCTTCTCCCAATCCCAAAGCGAAAAG
GGCGCTTCGCCCAAGCTTGCGGCCTTGCTGAAAGCCGAGGGTGAGTTGGA
AGAAGCCTTGGATCGCTTGCAGCTCGTTGCCAAGGGTGATTTGAAACCCA
TTAAGAAGGGGGGAGGAGGGCTGTTCGGATTTGGGGGTGCGGAGGCGCCC
GCTGATAAGTACACGGGGATGAGCCAGGAGAAGATGGCGAATGCTTTGTA
TGCAGATGCAAAGACAGCATTCAATGCGTGGGTGGATGTGACGAACAAAG
GTATGTTTTGAGATCAGGGAGAGTGGAAGGGTTGCATGGAGTGCGGTGGT
TTTTGAATTATTTTTCTCACTTTCTTATCCTTCAACCATGCTTTGATTGC
GTAAAGATGGGCACAGAAATCTTTCATGTTCTGCATGTTGCGATTTTGGC
ATTTTCCATTGTAGTGCGAAACTCGCTCTCACTCCCTCCCCTTTTCTTCG
TTCCCATACAGCTATCATCGAGGTGAATAAGTTCGAGCCGCTCCCTTAG
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Coding sequence (CDS) from alignment at chr2:1238997..1240795+

>NO02G04580.1 ID=NO02G04580.1|Name=NO02G04580.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr2:1238997..1240795+ (Nannochloropsis oceanica)
ATGCAGCGCCTTTGGACTGCTTTGGCACTCTGCAGCATCATGCCTGGGGC
GACGGCATTCGTGTTGCCTGTGACCGGGCCGTGCATGCGCGAGACAATGA
CGATGAAGGCCTCTTTGTCTTCTAAGTCCTTGTCTCGGGCGGATATGCTC
CAATCGGCGGGCGGCGCCTTGTTTGGCGCGGCTGTCTTGTCAACGGTGGC
CCCGCAAGCGTCGAATGCTGAGAGCACACTGGCGTCCAGAAAGGTGTTAT
ACTTCCGGTACGCTCCCCGCATCAAGAATGCCCGCGATTACCTCGCCACT
GATTTTAAGTCGGCGTTGGCCAAGAAGGACTGGGCAGCCGTTGCTGCAGC
GTATGAGATCCAGAAACAGGCCCCGGACTCAAGCATGCGCTCCAATCCCC
AACGATTTACGAACAAGTTCGAGCGGGACCTCTACAGCCCCATGAAGATC
TTCTCCCAATCCCAAAGCGAAAAGGGCGCTTCGCCCAAGCTTGCGGCCTT
GCTGAAAGCCGAGGGTGAGTTGGAAGAAGCCTTGGATCGCTTGCAGCTCG
TTGCCAAGGGTGATTTGAAACCCATTAAGAAGGGGGGAGGAGGGCTGTTC
GGATTTGGGGGTGCGGAGGCGCCCGCTGATAAGTACACGGGGATGAGCCA
GGAGAAGATGGCGAATGCTTTGTATGCAGATGCAAAGACAGCATTCAATG
CGTGGGTGGATGTGACGAACAAAGCTATCATCGAGGTGAATAAGTTCGAG
CCGCTCCCTTAG
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Synonyms
Publications