NO02G04560.1, NO02G04560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04560.1
Unique NameNO02G04560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1117
Alignment locationchr2:1234259..1235810 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1234259..1235810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04560.1 vs.
Match: KFK25779.1 (hypothetical protein AALP_AA8G159300 [Arabis alpina])

HSP 1 Score: 167.5 bits (423), Expect = 3.000e-38
Identity = 79/139 (56.83%), Postives = 96/139 (69.06%), Query Frame = 0 
Query:    6 TVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANAEA 145
            TV+D+ P DF+ AYA+HLK     E+P W DIVKTG  KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +GG  RH+L Q E +  V  D+ GGRKIT  GQ  LDQ+A  +A AE+
Sbjct:    6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRKITSSGQRDLDQVAGRIAAAES 144
The following BLAST results are available for this feature:
BLAST of NO02G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KFK25779.13.000e-3856.83hypothetical protein AALP_AA8G159300 [Arabis alpin... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04560NO02G04560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04560.1NO02G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04560.1.cds1NO02G04560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04560.1.cds2NO02G04560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04560.1 ID=NO02G04560.1|Name=NO02G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp
CTGGCGGACCGTCTCCTTCCCCTTCCCAATTTCTTGTCTTCACTCGCAAG
CCATTTCCCTTGACCAAGCCCACACCTGTACTTAGAGAAATTGTGTAAGT
TAGCTGGAAACTCTCGGGCCGTAGAAAGCTTGGAAGGATGGCTGGCGTAG
AAGCCTCGCTCCCCTCCTCCCATCCATCCTCTTCTTCGTCGCTAGCCTCT
AGGCGGGGAGGAGGCAAGAAGTCATGGCGTTTGGTCATGTCGCCTTTGCC
ACTCATGTCCAACAGAGACACATTAAGCTTAGACACATATTGACACGGTG
GCCGGGGGCCAAAGCCCTTGTGGCGTCAACCCCAACACTTGCCTTGCTGC
CCCCCCCTGCATCATCACCCCCCCCTGCTTCTTTCCAATCCGCATAACTC
ATCCCACTCCGTCTCTCCCTACACGAACTTAAAGGCGACCATGGGACGCG
CCGTGACAGTGCGGGACATCAAGCCCCAAGACTTCATTGTCGCCTATGCT
GCTCACTTGAAGACGAAGGACAACTTCGAGGTCCCTAAGTGGGCAGACAT
CGTCAAGACCGGTATCGGCAAGGAATTGGCCCCTTACGACCCTGACTGGT
ACTACACCCGGGCCGCGGCCGTCCTCCGCCAGATCTATCTCAAGCAAGGT
ATTGGTGTAGGGGCGCTCCGACGCATCTACGGTGGCTCCAAGCGCCGTGG
GGTGGAGCGATCGACCACAGTGCTGGGGGCCGGGGGCTGCATCCGTCATG
TGCTTATCCAGTTCGAGAACTTGAAGTACGTGACAAAGGATAGCAACGGC
GGGCGTAAGATTACCAAGGAGGGGCAGACGGCCTTGGACCAGATCGCGGC
CTCGGTTGCAAACGCTGAGGCGGACGAGTAAATTACAACATCGACATTAC
ATAGGACTAGCTAGTGGCGGGTGCTTTCTTTGTTGGATGGGCGTGTACTT
GTGTTTCTGGAATGGATGCTGCTACGGCTCGCTCCTTTTGTTTGTTTTGA
TGGGGTGGACAAAGACACGTCTAGGCAAGGAAGAAAAGGGGACACTGCAA
AAGAAAAACCAATACCAAGCATATTCTCTGTGGAGAGAGAAATGAATGAT
TTTATTTTGTTGGTGAC
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protein sequence of NO02G04560.1

>NO02G04560.1-protein ID=NO02G04560.1-protein|Name=NO02G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYD
PDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGC
IRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANAEADE*
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mRNA from alignment at chr2:1234259..1235810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04560.1 ID=NO02G04560.1|Name=NO02G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp|location=Sequence derived from alignment at chr2:1234259..1235810+ (Nannochloropsis oceanica)
CTGGCGGACCGTCTCCTTCCCCTTCCCAATTTCTTGTCTTCACTCGCAAG
CCATTTCCCTTGACCAAGCCCACACCTGTACTTAGAGAAATTGTGTAAGT
TAGCTGGAAACTCTCGGGCCGTAGAAAGCTTGGAAGGATGGCTGGCGTAG
AAGCCTCGCTCCCCTCCTCCCATCCATCCTCTTCTTCGTCGCTAGCCTCT
AGGCGGGGAGGAGGCAAGAAGTCATGGCGTTTGGTCATGTCGCCTTTGCC
ACTCATGTCCAACAGAGACACATTAAGCTTAGACACATATTGACACGGTG
GCCGGGGGCCAAAGCCCTTGTGGCGTCAACCCCAACACTTGCCTTGCTGC
CCCCCCCTGCATCATCACCCCCCCCTGCTTCTTTCCAATCCGCATAACTC
ATCCCACTCCGTCTCTCCCTACACGAACTTAAAGGCGACCATGGGACGCG
CCGTGACAGTGCGGGACATCAAGCCCCAAGACTTCATTGTCGCCTATGCT
GCTCACTTGAAGACGAAGGACAACTTCGAGGTCCCTAAGTGGGCAGACAT
CGTCAAGACCGGTATCGGCAAGGAATTGGCCCCTTACGACCCTGACTGGT
ACTACACCCGGGCCGCGGCCGTCCTCCGCCAGATCTATCTCAAGCAAGGT
ATTGGTGTAGGGGCGCTCCGACGCATCTACGGTGGCTCCAAGCGCCGTGG
GGTGGAGCGATCGACCACAGTGCTGGGGGCCGGGGGCTGCATCCGTCATG
TGCTTATCCAGTTCGAGGTACGTGTGGGGGTCAGTGTGGCGTTGGATGGA
GAAAAAAGGGAGAAGGGGAAGACTAGAGAGAGTAGTATTCGAAGTAAGGA
GGACGCAGCTTTTGATCTGGTAGCAGCGTGGTACGAAAGAGATGGAAAGG
AGTGGAACTCTGCGTGACTACGGGAAGGCTTCCGTGTAATGGGACAGAGA
GGCTGTAGAAAATTAAGGCGCAGTTGGTCAATGTGACGGGCACGCAGTTA
GGTCAATGATCTATCTGCATGTGTGTTCATCTCTACCAGATGTTCTGTTG
ATATCGAGAGATATATTGTTTGAGAGAGACATATGTTAATCCCCACGGAT
GAAGTACATGAAGGAACTCTAGCCACAATCGATATGACCTGCCCATAAAC
TCAATTCCCTTCCTCTTTCTTCCTCCTTTTTACTGTTCACGCCTGAAAAC
AGAACTTGAAGTACGTGACAAAGGATAGCAACGGCGGGCGTAAGATTACC
AAGGAGGGGCAGACGGCCTTGGACCAGATCGCGGCCTCGGTTGCAAACGC
TGAGGCGGACGAGTAAATTACAACATCGACATTACATAGGACTAGCTAGT
GGCGGGTGCTTTCTTTGTTGGATGGGCGTGTACTTGTGTTTCTGGAATGG
ATGCTGCTACGGCTCGCTCCTTTTGTTTGTTTTGATGGGGTGGACAAAGA
CACGTCTAGGCAAGGAAGAAAAGGGGACACTGCAAAAGAAAAACCAATAC
CAAGCATATTCTCTGTGGAGAGAGAAATGAATGATTTTATTTTGTTGGTG
AC
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Coding sequence (CDS) from alignment at chr2:1234259..1235810+

>NO02G04560.1 ID=NO02G04560.1|Name=NO02G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at chr2:1234259..1235810+ (Nannochloropsis oceanica)
ATGGGACGCGCCGTGACAGTGCGGGACATCAAGCCCCAAGACTTCATTGT
CGCCTATGCTGCTCACTTGAAGACGAAGGACAACTTCGAGGTCCCTAAGT
GGGCAGACATCGTCAAGACCGGTATCGGCAAGGAATTGGCCCCTTACGAC
CCTGACTGGTACTACACCCGGGCCGCGGCCGTCCTCCGCCAGATCTATCT
CAAGCAAGGTATTGGTGTAGGGGCGCTCCGACGCATCTACGGTGGCTCCA
AGCGCCGTGGGGTGGAGCGATCGACCACAGTGCTGGGGGCCGGGGGCTGC
ATCCGTCATGTGCTTATCCAGTTCGAGAACTTGAAGTACGTGACAAAGGA
TAGCAACGGCGGGCGTAAGATTACCAAGGAGGGGCAGACGGCCTTGGACC
AGATCGCGGCCTCGGTTGCAAACGCTGAGGCGGACGAGTAA
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Synonyms
Publications