NO02G04530.2, NO02G04530.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04530.2
Unique NameNO02G04530.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr2:1226168..1227813 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1226168..1227813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04530.2 vs.
Match: EWM30203.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 8.300e-35
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 0 
Query:    6 LTTGLCMPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEKLQTD 105
            ++TGL  P +Y+SVH++VLG+GLYTQEKVK LEEYL  QV EGSYDFEANK+LLKLYLLYP  AN E VETILLKALLNLPATDFTLLLYILPEKLQTD
Sbjct:   37 ISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTD 135
The following BLAST results are available for this feature:
BLAST of NO02G04530.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30203.18.300e-3580.81Winged helix-turn-helix transcription repressor [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04530NO02G04530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04530.2NO02G04530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04530.2.cds1NO02G04530.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04530.2.cds2NO02G04530.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04530.2.cds3NO02G04530.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04530.2 ID=NO02G04530.2|Name=NO02G04530.2|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ACAGGGCGCGGCGAACCACAACCACGGCTCTGGTCTTCCCACCCATTGCC
TCCCCACCATCACCTACCGGCACGCCTAACGCAGCAGCCATGAGCCAAGC
GTCATTAACCACGGGCCTCTGTATGCCTAAGAATTACGACAGTGTGCACG
CCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAAGGTCAAGCCTTTG
GAGGAGTACTTGCTGCAACAGGTGGCGGAGGGGTCTTATGACTTCGAGGC
CAATAAGACCCTGCTCAAGTTGTACCTGCTGTACCCTTCTTTTGCCAACC
AAGAGAAAGTTGAGACGATTCTGCTCAAAGCCCTGCTGAACCTCCCGGCC
ACGGACTTCACCCTCCTTCTCTACATCCTTCCCGAGAAACTTCAGACAGA
TGTACGTACGGACAGGTTAGAGTCGTGTGATTTGCGGAAGAAGCGTCTCT
CTCTTGCCTCCAGTAGGAATAAAAGACGATATCTGTTGCGCGCTTGCTCT
GTGTGTGTGCATCGCACAGAATTACTCATAGCCACTCATTCATTTTACTG
CGTCTTTCGTACTCTCCCGTTTCAGGAAACCGTCCTCACTATCAAGGACG
CGGCCGAGGCCTTGGAGACTGCGCGATATGCCAACTTTTGGTCAATTGTT
AATAGCCGGGGGGCAGTCTTTGCTGCCATTCCCACTTGGAAGGATGACAT
ACGCAAGAGTAAGTGGTTCGGTGAAGGAGGGAAGAATAATCATTGTTTCT
TTATTATATGTACTTTCGTGGTGTAGGGATTTGCCTCTCATACACTCATA
CCTTTTCCCTCCCTCCCTCCTCGAAGTCATCTTGGTTGTGCACGCTGCCA
CGTACCAATCAGCAGACAAATCGCACATCGGGGACGGCGTGGGGCTTTCC
GGGGCCGCGCTCGAGACCTTTTTGAAGGCTCAAGCAAATGATGGTGTGGT
TGCCCGTGTGGTGGAGGACCGCGTGGTTTTTGCATTCAACAAGGAGAATC
AGCCGCGGGTACGGAAATTTAAGGAGACGGTTGACTTGCAAAATATGCTG
GGAATTTTGAATCGCTTGGCGGCGTAAACAGGGCTTAGTGGATAGGCCGA
ACAGAGGGGCCCAGGGGGAAGAGGAAAGAAATCTGCAGGACACTACAGTT
AAAGAAAAAGAAAATCAACATCTGCCGTGTCGCGTTGTTGTTGTTGTGTG
GGTACT
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protein sequence of NO02G04530.2

>NO02G04530.2-protein ID=NO02G04530.2-protein|Name=NO02G04530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MSQASLTTGLCMPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSY
DFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEK
LQTDVRTDRLESCDLRKKRLSLASSRNKRRYLLRACSVCVHRTELLIATH
SFYCVFRTLPFQETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTW
KDDIRKSKWFGEGGKNNHCFFIICTFVV*
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mRNA from alignment at chr2:1226168..1227813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04530.2 ID=NO02G04530.2|Name=NO02G04530.2|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at chr2:1226168..1227813- (Nannochloropsis oceanica)
ACAGGGCGCGGCGAACCACAACCACGGCTCTGGTCTTCCCACCCATTGCC
TCCCCACCATCACCTACCGGCACGCCTAACGCAGCAGCCATGAGCCAAGC
GTCATTAACCACGGGCCTCTGTATGCCTAAGAATTACGACAGTGTGCACG
CCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAAGGTCAAGCCTTTG
GAGGAGTACTTGCTGCAACAGGTGGGTAGATGCCATGGGAGGGTTTGGGA
GGAAGGCATGGGGCTTAAAGATGTGCCTGTTGCATCGAATCCGTCGCTTG
CTGCGCCAATTACGCTTTGAATCGAGAGAAATGTCTTCTATTCTTTATAT
TCTGCCCTGAGAGTTCATTTCCAGATCTCCAGCAAGGCTGTCTCCCCAAT
CACAAACACCTCTCCTACCTATTCACGTTTCTTGTCTCCCCTTTTTCCGT
ATCAGGTGGCGGAGGGGTCTTATGACTTCGAGGCCAATAAGACCCTGCTC
AAGTTGTACCTGCTGTACCCTTCTTTTGCCAACCAAGAGAAAGTTGAGAC
GGTAAGTTTGGAGACCCACGCATGTGGGAAAGAAGGGGGAGGGACTGAAG
ATGGAACAAGCAGTGATTGATAAAATTGAAGAAGAGTTCGAAATACTCGC
AATTTGCAATGCGGGCTTGTGCCTAGCGCGCGTGCAAATATGGTGGAGAC
GTTCACGCTCGCTCGCTCACTTCCTCTTTCCCCGAACAACCATCCCACCA
CTCACAGATTCTGCTCAAAGCCCTGCTGAACCTCCCGGCCACGGACTTCA
CCCTCCTTCTCTACATCCTTCCCGAGAAACTTCAGACAGATGTACGTACG
GACAGGTTAGAGTCGTGTGATTTGCGGAAGAAGCGTCTCTCTCTTGCCTC
CAGTAGGAATAAAAGACGATATCTGTTGCGCGCTTGCTCTGTGTGTGTGC
ATCGCACAGAATTACTCATAGCCACTCATTCATTTTACTGCGTCTTTCGT
ACTCTCCCGTTTCAGGAAACCGTCCTCACTATCAAGGACGCGGCCGAGGC
CTTGGAGACTGCGCGATATGCCAACTTTTGGTCAATTGTTAATAGCCGGG
GGGCAGTCTTTGCTGCCATTCCCACTTGGAAGGATGACATACGCAAGAGT
AAGTGGTTCGGTGAAGGAGGGAAGAATAATCATTGTTTCTTTATTATATG
TACTTTCGTGGTGTAGGGATTTGCCTCTCATACACTCATACCTTTTCCCT
CCCTCCCTCCTCGAAGTCATCTTGGTTGTGCACGCTGCCACGTACCAATC
AGCAGACAAATCGCACATCGGGGACGGCGTGGGGCTTTCCGGGGCCGCGC
TCGAGACCTTTTTGAAGGCTCAAGCAAATGATGGTGTGGTTGCCCGTGTG
GTGGAGGACCGCGTGGTTTTTGCATTCAACAAGGAGAATCAGCCGCGGGT
ACGGAAATTTAAGGAGACGGTTGACTTGCAAAATATGCTGGGAATTTTGA
ATCGCTTGGCGGCGTAAACAGGGCTTAGTGGATAGGCCGAACAGAGGGGC
CCAGGGGGAAGAGGAAAGAAATCTGCAGGACACTACAGTTAAAGAAAAAG
AAAATCAACATCTGCCGTGTCGCGTTGTTGTTGTTGTGTGGGTACT
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Coding sequence (CDS) from alignment at chr2:1226168..1227813-

>NO02G04530.2 ID=NO02G04530.2|Name=NO02G04530.2|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr2:1226168..1227813- (Nannochloropsis oceanica)
ATGAGCCAAGCGTCATTAACCACGGGCCTCTGTATGCCTAAGAATTACGA
CAGTGTGCACGCCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAAGG
TCAAGCCTTTGGAGGAGTACTTGCTGCAACAGGTGGCGGAGGGGTCTTAT
GACTTCGAGGCCAATAAGACCCTGCTCAAGTTGTACCTGCTGTACCCTTC
TTTTGCCAACCAAGAGAAAGTTGAGACGATTCTGCTCAAAGCCCTGCTGA
ACCTCCCGGCCACGGACTTCACCCTCCTTCTCTACATCCTTCCCGAGAAA
CTTCAGACAGATGTACGTACGGACAGGTTAGAGTCGTGTGATTTGCGGAA
GAAGCGTCTCTCTCTTGCCTCCAGTAGGAATAAAAGACGATATCTGTTGC
GCGCTTGCTCTGTGTGTGTGCATCGCACAGAATTACTCATAGCCACTCAT
TCATTTTACTGCGTCTTTCGTACTCTCCCGTTTCAGGAAACCGTCCTCAC
TATCAAGGACGCGGCCGAGGCCTTGGAGACTGCGCGATATGCCAACTTTT
GGTCAATTGTTAATAGCCGGGGGGCAGTCTTTGCTGCCATTCCCACTTGG
AAGGATGACATACGCAAGAGTAAGTGGTTCGGTGAAGGAGGGAAGAATAA
TCATTGTTTCTTTATTATATGTACTTTCGTGGTGTAG
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Synonyms
Publications