NO02G04480.1, NO02G04480.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04480.1
Unique Name	NO02G04480.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2471
Alignment location	chr2:1212479..1215093 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1212479..1215093 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G04480.1 vs.
Match: EWM29529.1 (hypothetical protein Naga_100006g33 [Nannochloropsis gaditana])

HSP 1 Score: 357.5 bits (916), Expect = 8.800e-95
Identity = 163/293 (55.63%), Postives = 198/293 (67.58%), Query Frame = 0

Query:  166 GMAGADCSVMGCTKKSRGSTGRCRRHGGGVTCVVPGCTGFSRLEGKCSVHGGAQMCLVHGCDRRARFYGRCTRHGGFVNCQMDRCTLRAVSKGRCAKHGGKDPCRHPGCTRPRLKSKDDWCMIHSRGLGTFLIQRQRERGQGLRPVPCTYFDPSGGCRCAEMATIGVGGPFLCPYHLLLSRCGGGVDCKASCFLKGRCVRHAGEEAVEGECQQPGCCTKAAVDDPYGFCVEHKQWKHFCRHWGCIARALVVGGWCPLHHLQFAGGQEEERVV-----REAMAAAAVKKREEGG 454
            G    +C V GC +KSRGST RCRRHGGG  C VPGCTGFSRLEGKCSVHGGAQMC+V GCD+RARFYGRCTRHGGFVNC+   C LRAV+KG CAKHGG+DPCRHPGC RP +KS+++WC +H R L +F  Q +RE  QGL PV C + D     +C E A +  G PF CP HL+L+RCGG VDC+ + +++GRCVRHAG ++   ECQQPGC   A   + +GFC +H+    FC H  C+ARA   GG C +H L  +  +E   +V     RE     A     EGG
Sbjct:  128 GSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQSRREVEQGLHPVTCMHVDSMHSIQCMEPALMSAGLPFFCPTHLILARCGGSVDCRGNSYVRGRCVRHAGGDSSGAECQQPGCTRDALGGEGHGFCEKHRDLGFFCTHTFCVARAKCHGGKCDMHRLMESDMKEAAMIVEGSGPREGDDQVAPGPDNEGG 420

The following BLAST results are available for this feature:

BLAST of NO02G04480.1 vs.

BLAST of NO02G04480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29529.1	8.800e-95	55.63	hypothetical protein Naga_100006g33 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G04480	NO02G04480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04480.1	NO02G04480.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04480.1.cds1	NO02G04480.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04480.1.cds2	NO02G04480.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1212479..1215093-
coding sequence from alignment at chr2:1212479..1215093-

mRNA sequence

>NO02G04480.1 ID=NO02G04480.1|Name=NO02G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2471bp
GCTTCCTTATTTCCCGCAAAACCCACAAAGAATGAGCCGATCTGCCTGCT
CCAGCTGAGGACATGCGCAAGGAGCAGCTGAGTTTCGATTGATACTTCGG
GACACGCAGCGCCCGTGCCTCGTTCTATGGCTAGTGCAGGCAAATCACCC
ACTCGGGCGGACGGAAAGGAAAGATTTTTGCAGCTTCCATCTTCCACCTC
CACGCAGCAGGACGTGCCAGACAGTGGAGGGGGCAGCAGTAGCAACATGC
CTCGTTCGTACGGTCTACGGGCCCGGCGCATGCCCTCCTACCTACAAACG
TCTGGCACAGAGGACGATAATGAGGATTCGGACTCAGACTCTTCAGTCGA
CGGCGGCGGCGGAAGACGAGGAGAAGGAGAAAGGGGAGGGCGAGAGACAC
GATATCAGTCACGCAGTCGCGGCGGCAGTGTGAGAAGATATAGTTGCACA
GGAGTGGGGAAAGATGATGATCGTTTGTCGTCCCTGCCTGGGGTTATGGG
TGGGGCTGCTGGTGGGGCTGCTGGTGCCAGCGGCAGTGGTGGGCGTGGTG
GTGGTGGAGGTAGAGGAGGCGGGAACGACAGCAGAAAGCGAAAGAGCCCT
ACTCCTCCACCAGGGGGAGGAGGGATGGCAGGAGCGGATTGCTCGGTGAT
GGGGTGCACGAAGAAGAGTCGGGGGTCGACAGGACGCTGTCGAAGGCATG
GGGGGGGGGTGACTTGTGTTGTGCCTGGTTGCACGGGCTTTTCCAGGTTG
GAGGGGAAATGCTCCGTGCACGGAGGAGCGCAGATGTGCTTAGTGCATGG
GTGTGATCGACGGGCGAGGTTCTATGGACGCTGTACGCGGCATGGGGGGT
TTGTAAATTGTCAGATGGACCGCTGCACTTTGCGGGCGGTGAGTAAGGGG
AGGTGTGCCAAGCACGGGGGCAAAGACCCATGTCGGCATCCGGGGTGCAC
TCGCCCGAGGTTGAAGAGTAAGGACGATTGGTGCATGATCCACTCCCGAG
GTTTGGGGACGTTTCTGATTCAAAGGCAGAGGGAGCGAGGGCAGGGGCTG
AGGCCTGTGCCGTGCACCTATTTTGACCCTAGCGGCGGGTGTAGGTGTGC
GGAAATGGCGACTATCGGCGTCGGGGGGCCATTTCTGTGCCCGTATCATT
TATTGTTGAGTAGGTGTGGAGGGGGGGTGGATTGCAAGGCTTCCTGTTTT
CTAAAAGGGCGGTGTGTGCGGCACGCAGGGGAGGAGGCAGTAGAAGGGGA
GTGCCAGCAACCAGGGTGTTGCACGAAGGCCGCGGTGGACGATCCGTACG
GGTTTTGTGTGGAGCATAAGCAATGGAAACATTTTTGCCGACATTGGGGC
TGTATTGCCCGTGCACTGGTGGTGGGGGGATGGTGTCCTTTGCATCACCT
GCAGTTTGCCGGGGGGCAGGAGGAAGAGAGGGTGGTGCGAGAGGCCATGG
CGGCAGCAGCGGTCAAGAAGAGGGAGGAGGGAGGAGGGAAAGCGGTCTGT
GAGGGAAGACAGCCCAAGCCGTTAAGGTGCTCCTCGTCGTCATATTCCTC
GGCCTCGCCAGGGCCAGGAGCGCGGGAAGGAGAGGCAAGGAAGGAGGGAG
CGGAGACGAAAGTTGTTGATTATTGGAGGAGAGCTGATTCGATGAATTCG
ACGGGCTGTCGACAAGGTGAGGCGGCGTTTTTAAGTGTGGGGGAAGGGAC
AGGAGAAATGTACGGGAGGGAGGGAGTGATAGGGAGGGTTGACGTCCCAG
AGGGAATGGACTTGACGTCCTCCGCTCTTTATTTTGGAGGAACGCCAATT
GACATGCCGCCTGCAACTGGGCCCTCGCCCGTGTCATCCCTCCCCTCCTT
TCCGTTGACCTCGACGTTATATACGTCTTTCATAACGGGCTCGGTGGATT
GCGCGTCGGATTTGGAGGCCTTGTCCTACTGGCATCCGGTTGTGAGAGAG
ATGGTAGGGTGGCGTAGAAATGAGGGGGTGGGGAGGGTGTTGGCGATAGA
GGATAAGGAGAAGGAGAAAGAGTGGGAGTGAGGGAGAGCAGAGAAGAAGA
AGGGTGAGTGCGAGTAGGGAAAGGAGGTGTGAATTGATGTAAGCTGTTGT
GTTGTAGCACCTTTCTGTAATTATTTGTGACGTTGGCAAGTCGAAAGAGT
GAGCTACAGGAAGAACGGGAGGGAGAAGATGACCTGGGGAAGCTTGGAAA
GACCCAGAGGCCGAGCAAGATACAAGCAGCCTTGTGGTTGGGAAAATGTT
GTCTATCGTGTGGCACGTGGGCGGAAGATATGGATGACTTATGCTCTTTG
TCTCTACTTTTCTTGCTGTCAGCGGTAGTGCTCCACAGTATTATCTGTAA
ATACAGTTAGAATGAAGTACGATTGATTGATTGAGTGGTGGAAGCGCAAA
AAATAAGACCACGACGAAACATAGATCGATCCGTAAACTATCTACAACCA
AGAACTCAAATCCACGCCACG

protein sequence of NO02G04480.1

>NO02G04480.1-protein ID=NO02G04480.1-protein|Name=NO02G04480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MASAGKSPTRADGKERFLQLPSSTSTQQDVPDSGGGSSSNMPRSYGLRAR
RMPSYLQTSGTEDDNEDSDSDSSVDGGGGRRGEGERGGRETRYQSRSRGG
SVRRYSCTGVGKDDDRLSSLPGVMGGAAGGAAGASGSGGRGGGGGRGGGN
DSRKRKSPTPPPGGGGMAGADCSVMGCTKKSRGSTGRCRRHGGGVTCVVP
GCTGFSRLEGKCSVHGGAQMCLVHGCDRRARFYGRCTRHGGFVNCQMDRC
TLRAVSKGRCAKHGGKDPCRHPGCTRPRLKSKDDWCMIHSRGLGTFLIQR
QRERGQGLRPVPCTYFDPSGGCRCAEMATIGVGGPFLCPYHLLLSRCGGG
VDCKASCFLKGRCVRHAGEEAVEGECQQPGCCTKAAVDDPYGFCVEHKQW
KHFCRHWGCIARALVVGGWCPLHHLQFAGGQEEERVVREAMAAAAVKKRE
EGGGKAVCEGRQPKPLRCSSSSYSSASPGPGAREGEARKEGAETKVVDYW
RRADSMNSTGCRQGEAAFLSVGEGTGEMYGREGVIGRVDVPEGMDLTSSA
LYFGGTPIDMPPATGPSPVSSLPSFPLTSTLYTSFITGSVDCASDLEALS
YWHPVVREMVGWRRNEGVGRVLAIEDKEKEKEWE*

mRNA from alignment at chr2:1212479..1215093-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G04480.1 ID=NO02G04480.1|Name=NO02G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2615bp|location=Sequence derived from alignment at chr2:1212479..1215093- (Nannochloropsis oceanica)
GCTTCCTTATTTCCCGCAAAACCCACAAAGAATGAGCCGATCTGCCTGCT
CCAGCTGAGGACATGCGCAAGGAGCAGCTGAGTTTCGATTGATACTTCGG
GACACGCAGCGCCCGTGCCTCGTTCTATGGCTAGTGCAGGCAAATCACCC
ACTCGGGCGGACGGAAAGGAAAGATTTTTGCAGCTTCCATCTTCCACCTC
CACGCAGCAGGACGTGCCAGACAGTGGAGGGGGCAGCAGTAGCAACATGC
CTCGTTCGTACGGTCTACGGGCCCGGCGCATGCCCTCCTACCTACAAAGT
AAGCCTCAGCCTCACACACTGGGTCGTCACAGGGTGGACATTTATCTTCC
TTGACCCCCGATTGATTTATTTAGACTTTTTCCCTTTTTTCTTAATCCCT
CTCCTTCCCCGACCTCCTCCTTTCCATTCATCCTCTCCTTAGCGTCTGGC
ACAGAGGACGATAATGAGGATTCGGACTCAGACTCTTCAGTCGACGGCGG
CGGCGGAAGACGAGGAGAAGGAGAAAGGGGAGGGCGAGAGACACGATATC
AGTCACGCAGTCGCGGCGGCAGTGTGAGAAGATATAGTTGCACAGGAGTG
GGGAAAGATGATGATCGTTTGTCGTCCCTGCCTGGGGTTATGGGTGGGGC
TGCTGGTGGGGCTGCTGGTGCCAGCGGCAGTGGTGGGCGTGGTGGTGGTG
GAGGTAGAGGAGGCGGGAACGACAGCAGAAAGCGAAAGAGCCCTACTCCT
CCACCAGGGGGAGGAGGGATGGCAGGAGCGGATTGCTCGGTGATGGGGTG
CACGAAGAAGAGTCGGGGGTCGACAGGACGCTGTCGAAGGCATGGGGGGG
GGGTGACTTGTGTTGTGCCTGGTTGCACGGGCTTTTCCAGGTTGGAGGGG
AAATGCTCCGTGCACGGAGGAGCGCAGATGTGCTTAGTGCATGGGTGTGA
TCGACGGGCGAGGTTCTATGGACGCTGTACGCGGCATGGGGGGTTTGTAA
ATTGTCAGATGGACCGCTGCACTTTGCGGGCGGTGAGTAAGGGGAGGTGT
GCCAAGCACGGGGGCAAAGACCCATGTCGGCATCCGGGGTGCACTCGCCC
GAGGTTGAAGAGTAAGGACGATTGGTGCATGATCCACTCCCGAGGTTTGG
GGACGTTTCTGATTCAAAGGCAGAGGGAGCGAGGGCAGGGGCTGAGGCCT
GTGCCGTGCACCTATTTTGACCCTAGCGGCGGGTGTAGGTGTGCGGAAAT
GGCGACTATCGGCGTCGGGGGGCCATTTCTGTGCCCGTATCATTTATTGT
TGAGTAGGTGTGGAGGGGGGGTGGATTGCAAGGCTTCCTGTTTTCTAAAA
GGGCGGTGTGTGCGGCACGCAGGGGAGGAGGCAGTAGAAGGGGAGTGCCA
GCAACCAGGGTGTTGCACGAAGGCCGCGGTGGACGATCCGTACGGGTTTT
GTGTGGAGCATAAGCAATGGAAACATTTTTGCCGACATTGGGGCTGTATT
GCCCGTGCACTGGTGGTGGGGGGATGGTGTCCTTTGCATCACCTGCAGTT
TGCCGGGGGGCAGGAGGAAGAGAGGGTGGTGCGAGAGGCCATGGCGGCAG
CAGCGGTCAAGAAGAGGGAGGAGGGAGGAGGGAAAGCGGTCTGTGAGGGA
AGACAGCCCAAGCCGTTAAGGTGCTCCTCGTCGTCATATTCCTCGGCCTC
GCCAGGGCCAGGAGCGCGGGAAGGAGAGGCAAGGAAGGAGGGAGCGGAGA
CGAAAGTTGTTGATTATTGGAGGAGAGCTGATTCGATGAATTCGACGGGC
TGTCGACAAGGTGAGGCGGCGTTTTTAAGTGTGGGGGAAGGGACAGGAGA
AATGTACGGGAGGGAGGGAGTGATAGGGAGGGTTGACGTCCCAGAGGGAA
TGGACTTGACGTCCTCCGCTCTTTATTTTGGAGGAACGCCAATTGACATG
CCGCCTGCAACTGGGCCCTCGCCCGTGTCATCCCTCCCCTCCTTTCCGTT
GACCTCGACGTTATATACGTCTTTCATAACGGGCTCGGTGGATTGCGCGT
CGGATTTGGAGGCCTTGTCCTACTGGCATCCGGTTGTGAGAGAGATGGTA
GGGTGGCGTAGAAATGAGGGGGTGGGGAGGGTGTTGGCGATAGAGGATAA
GGAGAAGGAGAAAGAGTGGGAGTGAGGGAGAGCAGAGAAGAAGAAGGGTG
AGTGCGAGTAGGGAAAGGAGGTGTGAATTGATGTAAGCTGTTGTGTTGTA
GCACCTTTCTGTAATTATTTGTGACGTTGGCAAGTCGAAAGAGTGAGCTA
CAGGAAGAACGGGAGGGAGAAGATGACCTGGGGAAGCTTGGAAAGACCCA
GAGGCCGAGCAAGATACAAGCAGCCTTGTGGTTGGGAAAATGTTGTCTAT
CGTGTGGCACGTGGGCGGAAGATATGGATGACTTATGCTCTTTGTCTCTA
CTTTTCTTGCTGTCAGCGGTAGTGCTCCACAGTATTATCTGTAAATACAG
TTAGAATGAAGTACGATTGATTGATTGAGTGGTGGAAGCGCAAAAAATAA
GACCACGACGAAACATAGATCGATCCGTAAACTATCTACAACCAAGAACT
CAAATCCACGCCACG

Coding sequence (CDS) from alignment at chr2:1212479..1215093-

>NO02G04480.1 ID=NO02G04480.1|Name=NO02G04480.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr2:1212479..1215093- (Nannochloropsis oceanica)
ATGGCTAGTGCAGGCAAATCACCCACTCGGGCGGACGGAAAGGAAAGATT
TTTGCAGCTTCCATCTTCCACCTCCACGCAGCAGGACGTGCCAGACAGTG
GAGGGGGCAGCAGTAGCAACATGCCTCGTTCGTACGGTCTACGGGCCCGG
CGCATGCCCTCCTACCTACAAACGTCTGGCACAGAGGACGATAATGAGGA
TTCGGACTCAGACTCTTCAGTCGACGGCGGCGGCGGAAGACGAGGAGAAG
GAGAAAGGGGAGGGCGAGAGACACGATATCAGTCACGCAGTCGCGGCGGC
AGTGTGAGAAGATATAGTTGCACAGGAGTGGGGAAAGATGATGATCGTTT
GTCGTCCCTGCCTGGGGTTATGGGTGGGGCTGCTGGTGGGGCTGCTGGTG
CCAGCGGCAGTGGTGGGCGTGGTGGTGGTGGAGGTAGAGGAGGCGGGAAC
GACAGCAGAAAGCGAAAGAGCCCTACTCCTCCACCAGGGGGAGGAGGGAT
GGCAGGAGCGGATTGCTCGGTGATGGGGTGCACGAAGAAGAGTCGGGGGT
CGACAGGACGCTGTCGAAGGCATGGGGGGGGGGTGACTTGTGTTGTGCCT
GGTTGCACGGGCTTTTCCAGGTTGGAGGGGAAATGCTCCGTGCACGGAGG
AGCGCAGATGTGCTTAGTGCATGGGTGTGATCGACGGGCGAGGTTCTATG
GACGCTGTACGCGGCATGGGGGGTTTGTAAATTGTCAGATGGACCGCTGC
ACTTTGCGGGCGGTGAGTAAGGGGAGGTGTGCCAAGCACGGGGGCAAAGA
CCCATGTCGGCATCCGGGGTGCACTCGCCCGAGGTTGAAGAGTAAGGACG
ATTGGTGCATGATCCACTCCCGAGGTTTGGGGACGTTTCTGATTCAAAGG
CAGAGGGAGCGAGGGCAGGGGCTGAGGCCTGTGCCGTGCACCTATTTTGA
CCCTAGCGGCGGGTGTAGGTGTGCGGAAATGGCGACTATCGGCGTCGGGG
GGCCATTTCTGTGCCCGTATCATTTATTGTTGAGTAGGTGTGGAGGGGGG
GTGGATTGCAAGGCTTCCTGTTTTCTAAAAGGGCGGTGTGTGCGGCACGC
AGGGGAGGAGGCAGTAGAAGGGGAGTGCCAGCAACCAGGGTGTTGCACGA
AGGCCGCGGTGGACGATCCGTACGGGTTTTGTGTGGAGCATAAGCAATGG
AAACATTTTTGCCGACATTGGGGCTGTATTGCCCGTGCACTGGTGGTGGG
GGGATGGTGTCCTTTGCATCACCTGCAGTTTGCCGGGGGGCAGGAGGAAG
AGAGGGTGGTGCGAGAGGCCATGGCGGCAGCAGCGGTCAAGAAGAGGGAG
GAGGGAGGAGGGAAAGCGGTCTGTGAGGGAAGACAGCCCAAGCCGTTAAG
GTGCTCCTCGTCGTCATATTCCTCGGCCTCGCCAGGGCCAGGAGCGCGGG
AAGGAGAGGCAAGGAAGGAGGGAGCGGAGACGAAAGTTGTTGATTATTGG
AGGAGAGCTGATTCGATGAATTCGACGGGCTGTCGACAAGGTGAGGCGGC
GTTTTTAAGTGTGGGGGAAGGGACAGGAGAAATGTACGGGAGGGAGGGAG
TGATAGGGAGGGTTGACGTCCCAGAGGGAATGGACTTGACGTCCTCCGCT
CTTTATTTTGGAGGAACGCCAATTGACATGCCGCCTGCAACTGGGCCCTC
GCCCGTGTCATCCCTCCCCTCCTTTCCGTTGACCTCGACGTTATATACGT
CTTTCATAACGGGCTCGGTGGATTGCGCGTCGGATTTGGAGGCCTTGTCC
TACTGGCATCCGGTTGTGAGAGAGATGGTAGGGTGGCGTAGAAATGAGGG
GGTGGGGAGGGTGTTGGCGATAGAGGATAAGGAGAAGGAGAAAGAGTGGG
AGTGA

Synonyms

Publications