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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1195077..1197278 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04410.1 vs.
Match: EWM30303.1 (scavenger receptor class b member 1 [Nannochloropsis gaditana]) HSP 1 Score: 1052.7 bits (2721), Expect = 4.800e-304 Identity = 506/694 (72.91%), Postives = 583/694 (84.01%), Query Frame = 0
Query: 1 MGRYDEDDTREAASKAEYSSLKDAINLNDDVYALPDRTSFFASRPLCGMWGGPRVWAIRRPSDRCGIILISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVVTFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLTLMGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERLHFPSLSRWQAGGLATMLKMTLNEREGRCMREEVTWDFGLPEAGGRDGEAVEAEWMRMLFLPMVIYDESFQMSPSFTSDFKHQVLGSVSVAKTTQVAGPLFAVVLLLVGVLVMVRGRRKERELAERRTQRYSTMQEGDILV 695
MGRYDED+ A + EYSS KDA++ D + P+R SF RP+CG+WGGPRVW IRR SDR G++LIS+A+VLG+LTACGP+IVD+LV GIDAQTVLKG GKA+ TFV+SG+N+GVEI+Y+L YLNLTNPTE+L GTA ARLEEVGPFVYRQ+R+KLN+TFA DGETVSF+L+KTY+FDE ANA TGLVDT +TTVHPVIQVLQGQL+NTLN L E++ P A GWLAP RR++ER+I+ASGLWKAVYKLVLCQGNPMGVSPFT Q+ARDLYWGYH DSVL MQ LV AI+ LA ++ K ++LPV+PEAFPGLQPNLTSEAET RRIGPN+VYTGQG TKARLQ YTMFQNMT V ACPDPTTG P EMP+CD+YQA+W NRSA RHGY+PQWGS AAN+VRGTDGSLFAHPLTG++TVVTFQEDYRRW+EMVY+GEV DFHG+ LRRYVFSQ+DFRNDS M++D+YQ+NLP GL NLTLMGGFPL+LSKPH LEA+P VQ+AVEGL PDPE HLTFIDAEERSGVTFRTHKRVQLNAGL+RL FPSLSR +A LAT+L+ LNE E RC+REEVTWDFGLP G MLFLPMV YDE F+M SF DFK QVLGS S AKT QVAGPLFAV+L L+GV++++RGRR E+ELA RRT RYST+ EGDI+V
Sbjct: 1 MGRYDEDNAHAEAKRVEYSSFKDALDDGDSFFGSPERASFCVRRPMCGVWGGPRVWCIRRASDRWGVLLISVAVVLGVLTACGPLIVDRLVAQGIDAQTVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHP-AIGWLAPLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDE----------HMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 683
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04410.1 ID=NO02G04410.1|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp ATGGGCCGTTATGACGAGGATGACACCCGTGAAGCTGCAAGCAAGGCGGA ATATTCTTCCCTGAAAGATGCCATCAATCTCAACGATGATGTGTACGCGC TTCCAGATCGTACATCCTTCTTTGCGAGTCGGCCCCTCTGTGGCATGTGG GGCGGCCCCCGGGTTTGGGCCATCCGTCGGCCCAGTGATCGGTGCGGCAT TATATTGATCAGCATTGCGCTGGTATTGGGGATTCTTACAGCGTGTGGGC CGGTTATTGTGGATAAGTTGGTGGAGAGTGGGATTGATGCTCAGACTGTT TTGAAGGGGCCGAAGGGAAAGGCGTTTTCGACCTTCGTGGAGAGCGGGGA TAATATTGGGGTGGAGATTTTTTATGCGTTGAGGTATTTGAACCTGACGA ATCCGACCGAGGTATTGGCGGGGACGGCAAAGGCACGGCTGGAAGAGGTG GGTCCGTTTGTGTACCGTCAGTACCGGAATAAACTGAATGTGACGTTCGC GGAGGATGGGGAGACGGTGAGTTTCATTTTGAAGAAGACGTATATGTTTG ATGAGGCGGCAAATGCGGACACGGGCTTAGTGGACACCCAAGCGATGATC ACAACGGTGCATCCAGTGATCCAGGTACTGCAGGGACAGCTGAAAAACAC GCTGAATGTGCACCTGACTGAGCTTTTACAGCCGTCTGCTGAGGGGTGGC TAGCCCCTTTCCGTCGCTCCGTGGAACGTCAAATTGAGGCTTCTGGCCTC TGGAAAGCCGTCTACAAGCTTGTCCTTTGCCAAGGCAACCCCATGGGCGT CTCCCCCTTCACCACCCAAACCGCCCGCGACCTCTACTGGGGATACCACG GTGACAGCGTCCTCCATGCTATGCAAACCCTCGTGAACGCCATTGAAGGG CTCGCCGCCAAAATCAACAAAGAAATCGCCCTCCCCGTCGTTCCCGAAGC CTTCCCCGGCCTTCAACCCAACCTCACCTCCGAGGCTGAAACCTTCCGTC GCATTGGGCCGAATATTGTATACACTGGCCAGGGGACGACCAAAGCCCGC CTCCAAGAATACACAATGTTCCAAAACATGACCTCCGTCCGCGCCTGCCC CGACCCCACCACCGGCGCCATCCCCGAAGAGGACGAAATGCCCTCCTGCG ATGTGTATCAAGCCGAGTGGGGCAATCGATCTGCGGCCCGGCACGGGTAC ATGCCCCAGTGGGGTTCGGAGGCCGCGAACCAAGTCAGGGGAACAGACGG GAGCTTGTTTGCGCACCCTTTGACGGGCAAAGACACGGTCGTGACATTTC AAGAGGATTATCGCCGCTGGGTGGAGATGGTGTATTTGGGGGAGGTGAGC GACTTCCATGGTTTGCCCTTGAGGAGGTATGTCTTCAGCCAGGAGGATTT TAGGAATGATTCGGCCATGGCCAGTGATTTCTACCAGGAGAACTTGCCGA TGGGTTTGTGCAATCTGACATTGATGGGAGGGTTCCCCTTGTATCTGAGC AAACCGCATTTGTTGGAGGCGGAGCCTCTTGTCCAAGAGGCAGTGGAGGG GTTGCATCCCGATCCGGAACGGCATTTGACTTTTATTGATGCGGAGGAGC GGAGTGGGGTGACGTTTCGAACGCATAAGCGGGTGCAGTTGAATGCGGGA TTGGAGCGATTGCATTTTCCGAGCTTGTCTCGTTGGCAGGCAGGCGGGTT GGCGACGATGTTGAAGATGACTTTAAATGAGAGGGAAGGGCGGTGTATGA GGGAGGAGGTGACGTGGGATTTCGGATTACCGGAGGCGGGAGGAAGGGAC GGAGAGGCGGTGGAGGCGGAGTGGATGAGGATGTTGTTTTTACCTATGGT GATTTATGACGAGAGCTTTCAGATGTCACCTAGTTTCACGTCGGACTTTA AACATCAGGTGTTGGGGAGTGTGAGCGTGGCGAAGACGACCCAGGTAGCT GGGCCGCTGTTTGCGGTGGTCTTGTTGTTAGTGGGGGTGCTGGTGATGGT GAGGGGCCGGAGGAAGGAGAGGGAGTTGGCGGAAAGGAGGACGCAAAGGT ATAGTACAATGCAAGAGGGGGATATTCTGGTGTAG back to topprotein sequence of NO02G04410.1 >NO02G04410.1-protein ID=NO02G04410.1-protein|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=695bp MGRYDEDDTREAASKAEYSSLKDAINLNDDVYALPDRTSFFASRPLCGMW GGPRVWAIRRPSDRCGIILISIALVLGILTACGPVIVDKLVESGIDAQTV LKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEV GPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMI TTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGL WKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEG LAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKAR LQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGY MPQWGSEAANQVRGTDGSLFAHPLTGKDTVVTFQEDYRRWVEMVYLGEVS DFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLTLMGGFPLYLS KPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAG LERLHFPSLSRWQAGGLATMLKMTLNEREGRCMREEVTWDFGLPEAGGRD GEAVEAEWMRMLFLPMVIYDESFQMSPSFTSDFKHQVLGSVSVAKTTQVA GPLFAVVLLLVGVLVMVRGRRKERELAERRTQRYSTMQEGDILV* back to topmRNA from alignment at chr2:1195077..1197278+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04410.1 ID=NO02G04410.1|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at chr2:1195077..1197278+ (Nannochloropsis oceanica) ATGGGCCGTTATGACGAGGATGACACCCGTGAAGCTGCAAGCAAGGTACG
ACTACGGGGAGTATCAAGTCGATTCCCCCTCCTACTGCTGACACCCACCA
CTTCCTTTCACCCCTCACCTCCTCTCTTTCTCCCTTTCTCCATCCTTCCC
TCCCTTTTCAAGGCGGAATATTCTTCCCTGAAAGATGCCATCAATCTCAA
CGATGATGTGTACGCGCTTCCAGATCGTACATCCTTCTTTGCGAGTCGGC
CCCTCTGTGGCATGTGGGGCGGCCCCCGGGTTTGGGCCATCCGTCGGCCC
AGTGATCGGTGCGGCATTATATTGATCAGCATTGCGCTGGTATTGGGGAT
TCTTACAGCGTGTGGGCCGGTTATTGTGGATAAGTTGGTGGAGAGTGGGA
TTGATGCTCAGACTGTTTTGAAGGGGCCGAAGGGAAAGGCGTTTTCGACC
TTCGTGGAGAGCGGGGATAATATTGGGGTGGAGATTTTTTATGCGTTGAG
GTATTTGAACCTGACGAATCCGACCGAGGTATTGGCGGGGACGGCAAAGG
CACGGCTGGAAGAGGTGGGTCCGTTTGTGTACCGTCAGTACCGGAATAAA
CTGAATGTGACGTTCGCGGAGGATGGGGAGACGGTGAGTTTCATTTTGAA
GAAGACGTATATGTTTGATGAGGCGGCAAATGCGGACACGGGCTTAGTGG
ACACCCAAGCGATGATCACAACGGTGCATCCAGTGATCCAGGTACTGCAG
GGACAGCTGAAAAACACGCTGAATGTGCACCTGACTGAGCTTTTACAGCC
GTCTGCTGAGGGGTGGCTAGCCCCTTTCCGTCGCTCCGTGGAACGTCAAA
TTGAGGCTTCTGGCCTCTGGAAAGCCGTCTACAAGCTTGTCCTTTGCCAA
GGCAACCCCATGGGCGTCTCCCCCTTCACCACCCAAACCGCCCGCGACCT
CTACTGGGGATACCACGGTGACAGCGTCCTCCATGCTATGCAAACCCTCG
TGAACGCCATTGAAGGGCTCGCCGCCAAAATCAACAAAGAAATCGCCCTC
CCCGTCGTTCCCGAAGCCTTCCCCGGCCTTCAACCCAACCTCACCTCCGA
GGCTGAAACCTTCCGTCGCATTGGGCCGAATATTGTATACACTGGCCAGG
GGACGACCAAAGCCCGCCTCCAAGAATACACAATGTTCCAAAACATGACC
TCCGTCCGCGCCTGCCCCGACCCCACCACCGGCGCCATCCCCGAAGAGGA
CGAAATGCCCTCCTGCGATGTGTATCAAGCCGAGTGGGGCAATCGATCTG
CGGCCCGGCACGGGTACATGCCCCAGTGGGGTTCGGAGGCCGCGAACCAA
GTCAGGGGAACAGACGGGAGCTTGTTTGCGCACCCTTTGACGGGCAAAGA
CACGGTCGTGACATTTCAAGAGGATTATCGCCGCTGGGTGGAGATGGTGT
ATTTGGGGGAGGTGAGCGACTTCCATGGTTTGCCCTTGAGGAGGTATGTC
TTCAGCCAGGAGGATTTTAGGAATGATTCGGCCATGGCCAGTGATTTCTA
CCAGGAGAACTTGCCGATGGGTTTGTGCAATCTGACATTGATGGGAGGGT
TCCCCTTGTATCTGAGCAAACCGCATTTGTTGGAGGCGGAGCCTCTTGTC
CAAGAGGCAGTGGAGGGGTTGCATCCCGATCCGGAACGGCATTTGACTTT
TATTGATGCGGAGGAGCGGAGTGGGGTGACGTTTCGAACGCATAAGCGGG
TGCAGTTGAATGCGGGATTGGAGCGATTGCATTTTCCGAGCTTGTCTCGT
TGGCAGGCAGGCGGGTTGGCGACGATGTTGAAGATGACTTTAAATGAGAG
GGAAGGGCGGTGTATGAGGGAGGAGGTGACGTGGGATTTCGGATTACCGG
AGGCGGGAGGAAGGGACGGAGAGGCGGTGGAGGCGGAGTGGATGAGGATG
TTGTTTTTACCTATGGTGATTTATGACGAGAGCTTTCAGATGTCACCTAG
TTTCACGTCGGACTTTAAACATCAGGTGTTGGGGAGTGTGAGCGTGGCGA
AGACGACCCAGGTAGCTGGGCCGCTGTTTGCGGTGGTCTTGTTGTTAGTG
GGGGTGCTGGTGATGGTGAGGGGCCGGAGGAAGGAGAGGGAGTTGGCGGA
AAGGAGGACGCAAAGGTATAGTACAATGCAAGAGGGGGATATTCTGGTGT
AG back to topCoding sequence (CDS) from alignment at chr2:1195077..1197278+ >NO02G04410.1 ID=NO02G04410.1|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=CDS|length=2085bp|location=Sequence derived from alignment at chr2:1195077..1197278+ (Nannochloropsis oceanica) ATGGGCCGTTATGACGAGGATGACACCCGTGAAGCTGCAAGCAAGGCGGA ATATTCTTCCCTGAAAGATGCCATCAATCTCAACGATGATGTGTACGCGC TTCCAGATCGTACATCCTTCTTTGCGAGTCGGCCCCTCTGTGGCATGTGG GGCGGCCCCCGGGTTTGGGCCATCCGTCGGCCCAGTGATCGGTGCGGCAT TATATTGATCAGCATTGCGCTGGTATTGGGGATTCTTACAGCGTGTGGGC CGGTTATTGTGGATAAGTTGGTGGAGAGTGGGATTGATGCTCAGACTGTT TTGAAGGGGCCGAAGGGAAAGGCGTTTTCGACCTTCGTGGAGAGCGGGGA TAATATTGGGGTGGAGATTTTTTATGCGTTGAGGTATTTGAACCTGACGA ATCCGACCGAGGTATTGGCGGGGACGGCAAAGGCACGGCTGGAAGAGGTG GGTCCGTTTGTGTACCGTCAGTACCGGAATAAACTGAATGTGACGTTCGC GGAGGATGGGGAGACGGTGAGTTTCATTTTGAAGAAGACGTATATGTTTG ATGAGGCGGCAAATGCGGACACGGGCTTAGTGGACACCCAAGCGATGATC ACAACGGTGCATCCAGTGATCCAGGTACTGCAGGGACAGCTGAAAAACAC GCTGAATGTGCACCTGACTGAGCTTTTACAGCCGTCTGCTGAGGGGTGGC TAGCCCCTTTCCGTCGCTCCGTGGAACGTCAAATTGAGGCTTCTGGCCTC TGGAAAGCCGTCTACAAGCTTGTCCTTTGCCAAGGCAACCCCATGGGCGT CTCCCCCTTCACCACCCAAACCGCCCGCGACCTCTACTGGGGATACCACG GTGACAGCGTCCTCCATGCTATGCAAACCCTCGTGAACGCCATTGAAGGG CTCGCCGCCAAAATCAACAAAGAAATCGCCCTCCCCGTCGTTCCCGAAGC CTTCCCCGGCCTTCAACCCAACCTCACCTCCGAGGCTGAAACCTTCCGTC GCATTGGGCCGAATATTGTATACACTGGCCAGGGGACGACCAAAGCCCGC CTCCAAGAATACACAATGTTCCAAAACATGACCTCCGTCCGCGCCTGCCC CGACCCCACCACCGGCGCCATCCCCGAAGAGGACGAAATGCCCTCCTGCG ATGTGTATCAAGCCGAGTGGGGCAATCGATCTGCGGCCCGGCACGGGTAC ATGCCCCAGTGGGGTTCGGAGGCCGCGAACCAAGTCAGGGGAACAGACGG GAGCTTGTTTGCGCACCCTTTGACGGGCAAAGACACGGTCGTGACATTTC AAGAGGATTATCGCCGCTGGGTGGAGATGGTGTATTTGGGGGAGGTGAGC GACTTCCATGGTTTGCCCTTGAGGAGGTATGTCTTCAGCCAGGAGGATTT TAGGAATGATTCGGCCATGGCCAGTGATTTCTACCAGGAGAACTTGCCGA TGGGTTTGTGCAATCTGACATTGATGGGAGGGTTCCCCTTGTATCTGAGC AAACCGCATTTGTTGGAGGCGGAGCCTCTTGTCCAAGAGGCAGTGGAGGG GTTGCATCCCGATCCGGAACGGCATTTGACTTTTATTGATGCGGAGGAGC GGAGTGGGGTGACGTTTCGAACGCATAAGCGGGTGCAGTTGAATGCGGGA TTGGAGCGATTGCATTTTCCGAGCTTGTCTCGTTGGCAGGCAGGCGGGTT GGCGACGATGTTGAAGATGACTTTAAATGAGAGGGAAGGGCGGTGTATGA GGGAGGAGGTGACGTGGGATTTCGGATTACCGGAGGCGGGAGGAAGGGAC GGAGAGGCGGTGGAGGCGGAGTGGATGAGGATGTTGTTTTTACCTATGGT GATTTATGACGAGAGCTTTCAGATGTCACCTAGTTTCACGTCGGACTTTA AACATCAGGTGTTGGGGAGTGTGAGCGTGGCGAAGACGACCCAGGTAGCT GGGCCGCTGTTTGCGGTGGTCTTGTTGTTAGTGGGGGTGCTGGTGATGGT GAGGGGCCGGAGGAAGGAGAGGGAGTTGGCGGAAAGGAGGACGCAAAGGT ATAGTACAATGCAAGAGGGGGATATTCTGGTGTAG back to top
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