NO02G04410.1, NO02G04410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04410.1
Unique NameNO02G04410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2085
Alignment locationchr2:1195077..1197278 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1195077..1197278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G04410.1 vs.
Match: EWM30303.1 (scavenger receptor class b member 1 [Nannochloropsis gaditana])

HSP 1 Score: 1052.7 bits (2721), Expect = 4.800e-304
Identity = 506/694 (72.91%), Postives = 583/694 (84.01%), Query Frame = 0
Query:    1 MGRYDEDDTREAASKAEYSSLKDAINLNDDVYALPDRTSFFASRPLCGMWGGPRVWAIRRPSDRCGIILISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVVTFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLTLMGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERLHFPSLSRWQAGGLATMLKMTLNEREGRCMREEVTWDFGLPEAGGRDGEAVEAEWMRMLFLPMVIYDESFQMSPSFTSDFKHQVLGSVSVAKTTQVAGPLFAVVLLLVGVLVMVRGRRKERELAERRTQRYSTMQEGDILV 695
            MGRYDED+    A + EYSS KDA++  D  +  P+R SF   RP+CG+WGGPRVW IRR SDR G++LIS+A+VLG+LTACGP+IVD+LV  GIDAQTVLKG  GKA+ TFV+SG+N+GVEI+Y+L YLNLTNPTE+L GTA ARLEEVGPFVYRQ+R+KLN+TFA DGETVSF+L+KTY+FDE ANA TGLVDT   +TTVHPVIQVLQGQL+NTLN  L E++ P A GWLAP RR++ER+I+ASGLWKAVYKLVLCQGNPMGVSPFT Q+ARDLYWGYH DSVL  MQ LV AI+ LA ++ K ++LPV+PEAFPGLQPNLTSEAET RRIGPN+VYTGQG TKARLQ YTMFQNMT V ACPDPTTG  P   EMP+CD+YQA+W NRSA RHGY+PQWGS AAN+VRGTDGSLFAHPLTG++TVVTFQEDYRRW+EMVY+GEV DFHG+ LRRYVFSQ+DFRNDS M++D+YQ+NLP GL NLTLMGGFPL+LSKPH LEA+P VQ+AVEGL PDPE HLTFIDAEERSGVTFRTHKRVQLNAGL+RL FPSLSR +A  LAT+L+  LNE E RC+REEVTWDFGLP  G             MLFLPMV YDE F+M  SF  DFK QVLGS S AKT QVAGPLFAV+L L+GV++++RGRR E+ELA RRT RYST+ EGDI+V
Sbjct:    1 MGRYDEDNAHAEAKRVEYSSFKDALDDGDSFFGSPERASFCVRRPMCGVWGGPRVWCIRRASDRWGVLLISVAVVLGVLTACGPLIVDRLVAQGIDAQTVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHP-AIGWLAPLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDE----------HMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 683          
The following BLAST results are available for this feature:
BLAST of NO02G04410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30303.14.800e-30472.91scavenger receptor class b member 1 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04410NO02G04410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04410.1NO02G04410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04410.1.cds1NO02G04410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04410.1.cds2NO02G04410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04410.1 ID=NO02G04410.1|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp
ATGGGCCGTTATGACGAGGATGACACCCGTGAAGCTGCAAGCAAGGCGGA
ATATTCTTCCCTGAAAGATGCCATCAATCTCAACGATGATGTGTACGCGC
TTCCAGATCGTACATCCTTCTTTGCGAGTCGGCCCCTCTGTGGCATGTGG
GGCGGCCCCCGGGTTTGGGCCATCCGTCGGCCCAGTGATCGGTGCGGCAT
TATATTGATCAGCATTGCGCTGGTATTGGGGATTCTTACAGCGTGTGGGC
CGGTTATTGTGGATAAGTTGGTGGAGAGTGGGATTGATGCTCAGACTGTT
TTGAAGGGGCCGAAGGGAAAGGCGTTTTCGACCTTCGTGGAGAGCGGGGA
TAATATTGGGGTGGAGATTTTTTATGCGTTGAGGTATTTGAACCTGACGA
ATCCGACCGAGGTATTGGCGGGGACGGCAAAGGCACGGCTGGAAGAGGTG
GGTCCGTTTGTGTACCGTCAGTACCGGAATAAACTGAATGTGACGTTCGC
GGAGGATGGGGAGACGGTGAGTTTCATTTTGAAGAAGACGTATATGTTTG
ATGAGGCGGCAAATGCGGACACGGGCTTAGTGGACACCCAAGCGATGATC
ACAACGGTGCATCCAGTGATCCAGGTACTGCAGGGACAGCTGAAAAACAC
GCTGAATGTGCACCTGACTGAGCTTTTACAGCCGTCTGCTGAGGGGTGGC
TAGCCCCTTTCCGTCGCTCCGTGGAACGTCAAATTGAGGCTTCTGGCCTC
TGGAAAGCCGTCTACAAGCTTGTCCTTTGCCAAGGCAACCCCATGGGCGT
CTCCCCCTTCACCACCCAAACCGCCCGCGACCTCTACTGGGGATACCACG
GTGACAGCGTCCTCCATGCTATGCAAACCCTCGTGAACGCCATTGAAGGG
CTCGCCGCCAAAATCAACAAAGAAATCGCCCTCCCCGTCGTTCCCGAAGC
CTTCCCCGGCCTTCAACCCAACCTCACCTCCGAGGCTGAAACCTTCCGTC
GCATTGGGCCGAATATTGTATACACTGGCCAGGGGACGACCAAAGCCCGC
CTCCAAGAATACACAATGTTCCAAAACATGACCTCCGTCCGCGCCTGCCC
CGACCCCACCACCGGCGCCATCCCCGAAGAGGACGAAATGCCCTCCTGCG
ATGTGTATCAAGCCGAGTGGGGCAATCGATCTGCGGCCCGGCACGGGTAC
ATGCCCCAGTGGGGTTCGGAGGCCGCGAACCAAGTCAGGGGAACAGACGG
GAGCTTGTTTGCGCACCCTTTGACGGGCAAAGACACGGTCGTGACATTTC
AAGAGGATTATCGCCGCTGGGTGGAGATGGTGTATTTGGGGGAGGTGAGC
GACTTCCATGGTTTGCCCTTGAGGAGGTATGTCTTCAGCCAGGAGGATTT
TAGGAATGATTCGGCCATGGCCAGTGATTTCTACCAGGAGAACTTGCCGA
TGGGTTTGTGCAATCTGACATTGATGGGAGGGTTCCCCTTGTATCTGAGC
AAACCGCATTTGTTGGAGGCGGAGCCTCTTGTCCAAGAGGCAGTGGAGGG
GTTGCATCCCGATCCGGAACGGCATTTGACTTTTATTGATGCGGAGGAGC
GGAGTGGGGTGACGTTTCGAACGCATAAGCGGGTGCAGTTGAATGCGGGA
TTGGAGCGATTGCATTTTCCGAGCTTGTCTCGTTGGCAGGCAGGCGGGTT
GGCGACGATGTTGAAGATGACTTTAAATGAGAGGGAAGGGCGGTGTATGA
GGGAGGAGGTGACGTGGGATTTCGGATTACCGGAGGCGGGAGGAAGGGAC
GGAGAGGCGGTGGAGGCGGAGTGGATGAGGATGTTGTTTTTACCTATGGT
GATTTATGACGAGAGCTTTCAGATGTCACCTAGTTTCACGTCGGACTTTA
AACATCAGGTGTTGGGGAGTGTGAGCGTGGCGAAGACGACCCAGGTAGCT
GGGCCGCTGTTTGCGGTGGTCTTGTTGTTAGTGGGGGTGCTGGTGATGGT
GAGGGGCCGGAGGAAGGAGAGGGAGTTGGCGGAAAGGAGGACGCAAAGGT
ATAGTACAATGCAAGAGGGGGATATTCTGGTGTAG
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protein sequence of NO02G04410.1

>NO02G04410.1-protein ID=NO02G04410.1-protein|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=695bp
MGRYDEDDTREAASKAEYSSLKDAINLNDDVYALPDRTSFFASRPLCGMW
GGPRVWAIRRPSDRCGIILISIALVLGILTACGPVIVDKLVESGIDAQTV
LKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEV
GPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMI
TTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGL
WKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEG
LAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKAR
LQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGY
MPQWGSEAANQVRGTDGSLFAHPLTGKDTVVTFQEDYRRWVEMVYLGEVS
DFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLTLMGGFPLYLS
KPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAG
LERLHFPSLSRWQAGGLATMLKMTLNEREGRCMREEVTWDFGLPEAGGRD
GEAVEAEWMRMLFLPMVIYDESFQMSPSFTSDFKHQVLGSVSVAKTTQVA
GPLFAVVLLLVGVLVMVRGRRKERELAERRTQRYSTMQEGDILV*
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mRNA from alignment at chr2:1195077..1197278+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04410.1 ID=NO02G04410.1|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at chr2:1195077..1197278+ (Nannochloropsis oceanica)
ATGGGCCGTTATGACGAGGATGACACCCGTGAAGCTGCAAGCAAGGTACG ACTACGGGGAGTATCAAGTCGATTCCCCCTCCTACTGCTGACACCCACCA CTTCCTTTCACCCCTCACCTCCTCTCTTTCTCCCTTTCTCCATCCTTCCC TCCCTTTTCAAGGCGGAATATTCTTCCCTGAAAGATGCCATCAATCTCAA CGATGATGTGTACGCGCTTCCAGATCGTACATCCTTCTTTGCGAGTCGGC CCCTCTGTGGCATGTGGGGCGGCCCCCGGGTTTGGGCCATCCGTCGGCCC AGTGATCGGTGCGGCATTATATTGATCAGCATTGCGCTGGTATTGGGGAT TCTTACAGCGTGTGGGCCGGTTATTGTGGATAAGTTGGTGGAGAGTGGGA TTGATGCTCAGACTGTTTTGAAGGGGCCGAAGGGAAAGGCGTTTTCGACC TTCGTGGAGAGCGGGGATAATATTGGGGTGGAGATTTTTTATGCGTTGAG GTATTTGAACCTGACGAATCCGACCGAGGTATTGGCGGGGACGGCAAAGG CACGGCTGGAAGAGGTGGGTCCGTTTGTGTACCGTCAGTACCGGAATAAA CTGAATGTGACGTTCGCGGAGGATGGGGAGACGGTGAGTTTCATTTTGAA GAAGACGTATATGTTTGATGAGGCGGCAAATGCGGACACGGGCTTAGTGG ACACCCAAGCGATGATCACAACGGTGCATCCAGTGATCCAGGTACTGCAG GGACAGCTGAAAAACACGCTGAATGTGCACCTGACTGAGCTTTTACAGCC GTCTGCTGAGGGGTGGCTAGCCCCTTTCCGTCGCTCCGTGGAACGTCAAA TTGAGGCTTCTGGCCTCTGGAAAGCCGTCTACAAGCTTGTCCTTTGCCAA GGCAACCCCATGGGCGTCTCCCCCTTCACCACCCAAACCGCCCGCGACCT CTACTGGGGATACCACGGTGACAGCGTCCTCCATGCTATGCAAACCCTCG TGAACGCCATTGAAGGGCTCGCCGCCAAAATCAACAAAGAAATCGCCCTC CCCGTCGTTCCCGAAGCCTTCCCCGGCCTTCAACCCAACCTCACCTCCGA GGCTGAAACCTTCCGTCGCATTGGGCCGAATATTGTATACACTGGCCAGG GGACGACCAAAGCCCGCCTCCAAGAATACACAATGTTCCAAAACATGACC TCCGTCCGCGCCTGCCCCGACCCCACCACCGGCGCCATCCCCGAAGAGGA CGAAATGCCCTCCTGCGATGTGTATCAAGCCGAGTGGGGCAATCGATCTG CGGCCCGGCACGGGTACATGCCCCAGTGGGGTTCGGAGGCCGCGAACCAA GTCAGGGGAACAGACGGGAGCTTGTTTGCGCACCCTTTGACGGGCAAAGA CACGGTCGTGACATTTCAAGAGGATTATCGCCGCTGGGTGGAGATGGTGT ATTTGGGGGAGGTGAGCGACTTCCATGGTTTGCCCTTGAGGAGGTATGTC TTCAGCCAGGAGGATTTTAGGAATGATTCGGCCATGGCCAGTGATTTCTA CCAGGAGAACTTGCCGATGGGTTTGTGCAATCTGACATTGATGGGAGGGT TCCCCTTGTATCTGAGCAAACCGCATTTGTTGGAGGCGGAGCCTCTTGTC CAAGAGGCAGTGGAGGGGTTGCATCCCGATCCGGAACGGCATTTGACTTT TATTGATGCGGAGGAGCGGAGTGGGGTGACGTTTCGAACGCATAAGCGGG TGCAGTTGAATGCGGGATTGGAGCGATTGCATTTTCCGAGCTTGTCTCGT TGGCAGGCAGGCGGGTTGGCGACGATGTTGAAGATGACTTTAAATGAGAG GGAAGGGCGGTGTATGAGGGAGGAGGTGACGTGGGATTTCGGATTACCGG AGGCGGGAGGAAGGGACGGAGAGGCGGTGGAGGCGGAGTGGATGAGGATG TTGTTTTTACCTATGGTGATTTATGACGAGAGCTTTCAGATGTCACCTAG TTTCACGTCGGACTTTAAACATCAGGTGTTGGGGAGTGTGAGCGTGGCGA AGACGACCCAGGTAGCTGGGCCGCTGTTTGCGGTGGTCTTGTTGTTAGTG GGGGTGCTGGTGATGGTGAGGGGCCGGAGGAAGGAGAGGGAGTTGGCGGA AAGGAGGACGCAAAGGTATAGTACAATGCAAGAGGGGGATATTCTGGTGT AG
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Coding sequence (CDS) from alignment at chr2:1195077..1197278+

>NO02G04410.1 ID=NO02G04410.1|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=CDS|length=2085bp|location=Sequence derived from alignment at chr2:1195077..1197278+ (Nannochloropsis oceanica)
ATGGGCCGTTATGACGAGGATGACACCCGTGAAGCTGCAAGCAAGGCGGA
ATATTCTTCCCTGAAAGATGCCATCAATCTCAACGATGATGTGTACGCGC
TTCCAGATCGTACATCCTTCTTTGCGAGTCGGCCCCTCTGTGGCATGTGG
GGCGGCCCCCGGGTTTGGGCCATCCGTCGGCCCAGTGATCGGTGCGGCAT
TATATTGATCAGCATTGCGCTGGTATTGGGGATTCTTACAGCGTGTGGGC
CGGTTATTGTGGATAAGTTGGTGGAGAGTGGGATTGATGCTCAGACTGTT
TTGAAGGGGCCGAAGGGAAAGGCGTTTTCGACCTTCGTGGAGAGCGGGGA
TAATATTGGGGTGGAGATTTTTTATGCGTTGAGGTATTTGAACCTGACGA
ATCCGACCGAGGTATTGGCGGGGACGGCAAAGGCACGGCTGGAAGAGGTG
GGTCCGTTTGTGTACCGTCAGTACCGGAATAAACTGAATGTGACGTTCGC
GGAGGATGGGGAGACGGTGAGTTTCATTTTGAAGAAGACGTATATGTTTG
ATGAGGCGGCAAATGCGGACACGGGCTTAGTGGACACCCAAGCGATGATC
ACAACGGTGCATCCAGTGATCCAGGTACTGCAGGGACAGCTGAAAAACAC
GCTGAATGTGCACCTGACTGAGCTTTTACAGCCGTCTGCTGAGGGGTGGC
TAGCCCCTTTCCGTCGCTCCGTGGAACGTCAAATTGAGGCTTCTGGCCTC
TGGAAAGCCGTCTACAAGCTTGTCCTTTGCCAAGGCAACCCCATGGGCGT
CTCCCCCTTCACCACCCAAACCGCCCGCGACCTCTACTGGGGATACCACG
GTGACAGCGTCCTCCATGCTATGCAAACCCTCGTGAACGCCATTGAAGGG
CTCGCCGCCAAAATCAACAAAGAAATCGCCCTCCCCGTCGTTCCCGAAGC
CTTCCCCGGCCTTCAACCCAACCTCACCTCCGAGGCTGAAACCTTCCGTC
GCATTGGGCCGAATATTGTATACACTGGCCAGGGGACGACCAAAGCCCGC
CTCCAAGAATACACAATGTTCCAAAACATGACCTCCGTCCGCGCCTGCCC
CGACCCCACCACCGGCGCCATCCCCGAAGAGGACGAAATGCCCTCCTGCG
ATGTGTATCAAGCCGAGTGGGGCAATCGATCTGCGGCCCGGCACGGGTAC
ATGCCCCAGTGGGGTTCGGAGGCCGCGAACCAAGTCAGGGGAACAGACGG
GAGCTTGTTTGCGCACCCTTTGACGGGCAAAGACACGGTCGTGACATTTC
AAGAGGATTATCGCCGCTGGGTGGAGATGGTGTATTTGGGGGAGGTGAGC
GACTTCCATGGTTTGCCCTTGAGGAGGTATGTCTTCAGCCAGGAGGATTT
TAGGAATGATTCGGCCATGGCCAGTGATTTCTACCAGGAGAACTTGCCGA
TGGGTTTGTGCAATCTGACATTGATGGGAGGGTTCCCCTTGTATCTGAGC
AAACCGCATTTGTTGGAGGCGGAGCCTCTTGTCCAAGAGGCAGTGGAGGG
GTTGCATCCCGATCCGGAACGGCATTTGACTTTTATTGATGCGGAGGAGC
GGAGTGGGGTGACGTTTCGAACGCATAAGCGGGTGCAGTTGAATGCGGGA
TTGGAGCGATTGCATTTTCCGAGCTTGTCTCGTTGGCAGGCAGGCGGGTT
GGCGACGATGTTGAAGATGACTTTAAATGAGAGGGAAGGGCGGTGTATGA
GGGAGGAGGTGACGTGGGATTTCGGATTACCGGAGGCGGGAGGAAGGGAC
GGAGAGGCGGTGGAGGCGGAGTGGATGAGGATGTTGTTTTTACCTATGGT
GATTTATGACGAGAGCTTTCAGATGTCACCTAGTTTCACGTCGGACTTTA
AACATCAGGTGTTGGGGAGTGTGAGCGTGGCGAAGACGACCCAGGTAGCT
GGGCCGCTGTTTGCGGTGGTCTTGTTGTTAGTGGGGGTGCTGGTGATGGT
GAGGGGCCGGAGGAAGGAGAGGGAGTTGGCGGAAAGGAGGACGCAAAGGT
ATAGTACAATGCAAGAGGGGGATATTCTGGTGTAG
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Synonyms
Publications