NO02G04310.1, NO02G04310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04310.1
Unique NameNO02G04310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length948
Alignment locationchr2:1167074..1168021 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1167074..1168021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04310.1 vs.
Match: EWM30308.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 394.4 bits (1012), Expect = 3.200e-106
Identity = 212/329 (64.44%), Postives = 252/329 (76.60%), Query Frame = 0 
Query:    1 MKPLLLLAISSVFLIA----------RLHTSAAFGVQLHRRLSTVRMAIAS----HGIYIVTGSTDGIGKHTATNLASRGAQAKVFVHGRNPARVTKTVEELRQRNPDGIDSVVGDLGSFADIRRVAAELRAKIKALSGDAPITLINNAGVFEQKRKASVEGLEMTFAINVAAPFLLTGLLLPLLQKRKHSRIINISSISQGGSIPWEDLQLSLPGAFSDHRSYSLSKLLMAMVSMEQSDRFGSSELAIVCCDPGTVNTKMLEAGWGMYGIDVSAANDETYLATDQKVGEMNGCYFVSKTPRRANSEAYDGEARRKLWSYLEEKTGFIY 316
            MKP  LL  SS+ L++          +LHTS+  GV   +  ST   + +S      IYIVTGSTDGIG+HTA+NL +    AK+ VHGRNPA+V +TV++L+  NP  ID VV DL SF DIRR+A +L  KI+A S DAP+ LINNAGVFE +RK S EGLEMTFAINVAAPFLLTGLLLPLL++RK+SRIINISSISQGGSIPW+DLQL+LPGA++DHR+YSLSKL MAM+SMEQS RFGS+E  IVCCDPGTVNTKMLEAGWGMYG+DVSAANDET LA    +   NG YFV +  R+AN+EAYD ++R +LW YLEE TGF Y
Sbjct:    1 MKPTSLLVPSSLLLLSSNLFVSSFVIQLHTSSIIGVSA-KSSSTGSSSRSSTRMLEKIYIVTGSTDGIGQHTASNLINT-PDAKLLVHGRNPAKVAQTVQQLKSVNPGDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLD--NGSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
The following BLAST results are available for this feature:
BLAST of NO02G04310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30308.13.200e-10664.44short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04310NO02G04310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04310.1NO02G04310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04310.1.cds1NO02G04310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04310.1 ID=NO02G04310.1|Name=NO02G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
ATGAAGCCGCTTCTGCTGCTCGCTATAAGCTCCGTCTTTCTTATTGCTCG
CCTGCACACCTCTGCTGCCTTTGGAGTTCAACTCCACCGCCGACTTTCGA
CAGTGCGCATGGCTATAGCTTCCCACGGCATCTACATCGTCACTGGTTCG
ACAGATGGTATCGGCAAGCACACAGCCACCAACCTGGCCTCTCGAGGAGC
CCAAGCCAAAGTTTTCGTCCACGGACGTAACCCGGCACGGGTTACCAAGA
CGGTAGAGGAACTAAGGCAGCGCAACCCTGATGGGATCGACAGCGTGGTA
GGCGACTTGGGTTCCTTCGCAGACATCAGGCGTGTAGCTGCCGAGCTACG
GGCCAAAATCAAGGCCTTGTCGGGCGATGCACCTATCACACTCATCAATA
ATGCAGGGGTATTCGAGCAGAAGCGCAAGGCTTCGGTGGAGGGGCTTGAA
ATGACTTTCGCCATCAACGTTGCTGCCCCCTTTCTACTGACGGGGTTGCT
GCTCCCTCTATTGCAAAAGCGAAAGCACAGCCGGATCATCAACATTTCCT
CCATTTCTCAAGGTGGTAGTATACCATGGGAGGATCTACAATTGTCATTA
CCAGGAGCATTCAGTGATCATAGGAGCTATTCGCTGAGCAAACTATTGAT
GGCCATGGTAAGTATGGAGCAAAGCGACCGCTTTGGTTCCTCTGAATTAG
CTATTGTATGCTGTGACCCCGGCACTGTCAACACCAAAATGCTCGAAGCC
GGATGGGGCATGTATGGCATTGATGTGTCCGCTGCGAATGATGAAACGTA
TCTGGCGACAGACCAGAAGGTTGGTGAGATGAATGGTTGTTATTTTGTAA
GTAAGACGCCGCGGAGGGCAAATTCTGAAGCATATGATGGGGAGGCAAGG
AGGAAATTGTGGTCGTATTTGGAGGAGAAGACAGGATTTATTTACTAG
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protein sequence of NO02G04310.1

>NO02G04310.1-protein ID=NO02G04310.1-protein|Name=NO02G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MKPLLLLAISSVFLIARLHTSAAFGVQLHRRLSTVRMAIASHGIYIVTGS
TDGIGKHTATNLASRGAQAKVFVHGRNPARVTKTVEELRQRNPDGIDSVV
GDLGSFADIRRVAAELRAKIKALSGDAPITLINNAGVFEQKRKASVEGLE
MTFAINVAAPFLLTGLLLPLLQKRKHSRIINISSISQGGSIPWEDLQLSL
PGAFSDHRSYSLSKLLMAMVSMEQSDRFGSSELAIVCCDPGTVNTKMLEA
GWGMYGIDVSAANDETYLATDQKVGEMNGCYFVSKTPRRANSEAYDGEAR
RKLWSYLEEKTGFIY*
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mRNA from alignment at chr2:1167074..1168021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04310.1 ID=NO02G04310.1|Name=NO02G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=948bp|location=Sequence derived from alignment at chr2:1167074..1168021+ (Nannochloropsis oceanica)
ATGAAGCCGCTTCTGCTGCTCGCTATAAGCTCCGTCTTTCTTATTGCTCG
CCTGCACACCTCTGCTGCCTTTGGAGTTCAACTCCACCGCCGACTTTCGA
CAGTGCGCATGGCTATAGCTTCCCACGGCATCTACATCGTCACTGGTTCG
ACAGATGGTATCGGCAAGCACACAGCCACCAACCTGGCCTCTCGAGGAGC
CCAAGCCAAAGTTTTCGTCCACGGACGTAACCCGGCACGGGTTACCAAGA
CGGTAGAGGAACTAAGGCAGCGCAACCCTGATGGGATCGACAGCGTGGTA
GGCGACTTGGGTTCCTTCGCAGACATCAGGCGTGTAGCTGCCGAGCTACG
GGCCAAAATCAAGGCCTTGTCGGGCGATGCACCTATCACACTCATCAATA
ATGCAGGGGTATTCGAGCAGAAGCGCAAGGCTTCGGTGGAGGGGCTTGAA
ATGACTTTCGCCATCAACGTTGCTGCCCCCTTTCTACTGACGGGGTTGCT
GCTCCCTCTATTGCAAAAGCGAAAGCACAGCCGGATCATCAACATTTCCT
CCATTTCTCAAGGTGGTAGTATACCATGGGAGGATCTACAATTGTCATTA
CCAGGAGCATTCAGTGATCATAGGAGCTATTCGCTGAGCAAACTATTGAT
GGCCATGGTAAGTATGGAGCAAAGCGACCGCTTTGGTTCCTCTGAATTAG
CTATTGTATGCTGTGACCCCGGCACTGTCAACACCAAAATGCTCGAAGCC
GGATGGGGCATGTATGGCATTGATGTGTCCGCTGCGAATGATGAAACGTA
TCTGGCGACAGACCAGAAGGTTGGTGAGATGAATGGTTGTTATTTTGTAA
GTAAGACGCCGCGGAGGGCAAATTCTGAAGCATATGATGGGGAGGCAAGG
AGGAAATTGTGGTCGTATTTGGAGGAGAAGACAGGATTTATTTACTAG
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Coding sequence (CDS) from alignment at chr2:1167074..1168021+

>NO02G04310.1 ID=NO02G04310.1|Name=NO02G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr2:1167074..1168021+ (Nannochloropsis oceanica)
ATGAAGCCGCTTCTGCTGCTCGCTATAAGCTCCGTCTTTCTTATTGCTCG
CCTGCACACCTCTGCTGCCTTTGGAGTTCAACTCCACCGCCGACTTTCGA
CAGTGCGCATGGCTATAGCTTCCCACGGCATCTACATCGTCACTGGTTCG
ACAGATGGTATCGGCAAGCACACAGCCACCAACCTGGCCTCTCGAGGAGC
CCAAGCCAAAGTTTTCGTCCACGGACGTAACCCGGCACGGGTTACCAAGA
CGGTAGAGGAACTAAGGCAGCGCAACCCTGATGGGATCGACAGCGTGGTA
GGCGACTTGGGTTCCTTCGCAGACATCAGGCGTGTAGCTGCCGAGCTACG
GGCCAAAATCAAGGCCTTGTCGGGCGATGCACCTATCACACTCATCAATA
ATGCAGGGGTATTCGAGCAGAAGCGCAAGGCTTCGGTGGAGGGGCTTGAA
ATGACTTTCGCCATCAACGTTGCTGCCCCCTTTCTACTGACGGGGTTGCT
GCTCCCTCTATTGCAAAAGCGAAAGCACAGCCGGATCATCAACATTTCCT
CCATTTCTCAAGGTGGTAGTATACCATGGGAGGATCTACAATTGTCATTA
CCAGGAGCATTCAGTGATCATAGGAGCTATTCGCTGAGCAAACTATTGAT
GGCCATGGTAAGTATGGAGCAAAGCGACCGCTTTGGTTCCTCTGAATTAG
CTATTGTATGCTGTGACCCCGGCACTGTCAACACCAAAATGCTCGAAGCC
GGATGGGGCATGTATGGCATTGATGTGTCCGCTGCGAATGATGAAACGTA
TCTGGCGACAGACCAGAAGGTTGGTGAGATGAATGGTTGTTATTTTGTAA
GTAAGACGCCGCGGAGGGCAAATTCTGAAGCATATGATGGGGAGGCAAGG
AGGAAATTGTGGTCGTATTTGGAGGAGAAGACAGGATTTATTTACTAG
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Synonyms
Publications