NO02G04290.1, NO02G04290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04290.1
Unique NameNO02G04290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr2:1164805..1165461 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1164805..1165461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04290.1 vs.
Match: EWM30343.1 (hypothetical protein Naga_100003g48 [Nannochloropsis gaditana])

HSP 1 Score: 218.8 bits (556), Expect = 1.700e-53
Identity = 138/224 (61.61%), Postives = 167/224 (74.55%), Query Frame = 0 
Query:    1 MMSRFASFFGRAAEDEDEEANASAPAPTPATVPHQST--RHSSRQPAS----SPPKQSSSTSASNSTNRPRSGSSSSSGSGGNSRHKGGKRKASTVKAQAAAMGVTLGVSPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRTPRSRLLEAKDQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRERILQDSKDLQKMLAAGGGR 219
            MMSRFASFFGR A +E E     APAP PA VPHQ    RH ++Q AS    +PP Q  +++++   NRPRSGSS +SGS   SRHK GKR+ ++     A      G+SPRS +AL KL+ Y  + +ALE  +A +E  LQDYPRTPR+RLLEAKDQIAQMNG+LEKLQY+GVDSIITAELESGKE+AKEKRK+LNQRCD+LRERILQ+S+DL KML AG G+
Sbjct:    1 MMSRFASFFGRGAGNEGENEQTHAPAPAPAPVPHQQQPHRHHNQQQASHRQPAPPPQGKASASTG--NRPRSGSSGNSGS---SRHKTGKRRGTSKTGPPAG-----GLSPRSVSALAKLEDYAHDADALEKLLASVELCLQDYPRTPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERILQNSRDLAKMLTAGAGK 214
The following BLAST results are available for this feature:
BLAST of NO02G04290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30343.11.700e-5361.61hypothetical protein Naga_100003g48 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04290NO02G04290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04290.1NO02G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04290.1.cds1NO02G04290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04290.1 ID=NO02G04290.1|Name=NO02G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGATGAGCCGGTTTGCGTCCTTCTTTGGGCGCGCCGCCGAGGACGAAGA
CGAGGAAGCCAACGCCTCTGCCCCAGCTCCCACGCCTGCAACTGTCCCGC
ACCAGTCCACTCGCCATTCCTCCCGTCAGCCTGCCTCGTCCCCGCCAAAG
CAGTCGTCCTCTACATCCGCCTCCAACAGCACTAACCGGCCTCGCTCGGG
GAGCAGCAGCAGCAGCGGGAGCGGGGGCAACTCGAGACACAAAGGTGGGA
AGCGAAAAGCCAGCACGGTCAAGGCGCAAGCTGCGGCCATGGGCGTGACA
CTGGGCGTTTCGCCTCGCTCGGCCGCTGCTTTGAATAAGTTGCAGCGTTA
TAATCAGGAGTTGGAGGCCCTTGAGAATGAAGTGGCAGACATGGAGGCAG
CGTTACAAGACTATCCCCGCACGCCCCGATCCCGGCTGTTGGAAGCTAAG
GATCAGATTGCCCAGATGAATGGGAGTTTGGAGAAGCTCCAGTACAGTGG
CGTCGATTCTATTATAACAGCTGAATTGGAGAGTGGGAAGGAACGGGCGA
AGGAGAAGCGGAAGTCGTTGAACCAACGGTGTGATGCTTTAAGGGAGCGG
ATTTTGCAGGATTCGAAGGATTTGCAGAAGATGCTGGCGGCTGGGGGTGG
GAGGTAG
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protein sequence of NO02G04290.1

>NO02G04290.1-protein ID=NO02G04290.1-protein|Name=NO02G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MMSRFASFFGRAAEDEDEEANASAPAPTPATVPHQSTRHSSRQPASSPPK
QSSSTSASNSTNRPRSGSSSSSGSGGNSRHKGGKRKASTVKAQAAAMGVT
LGVSPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRTPRSRLLEAK
DQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRER
ILQDSKDLQKMLAAGGGR*
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mRNA from alignment at chr2:1164805..1165461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04290.1 ID=NO02G04290.1|Name=NO02G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at chr2:1164805..1165461+ (Nannochloropsis oceanica)
ATGATGAGCCGGTTTGCGTCCTTCTTTGGGCGCGCCGCCGAGGACGAAGA
CGAGGAAGCCAACGCCTCTGCCCCAGCTCCCACGCCTGCAACTGTCCCGC
ACCAGTCCACTCGCCATTCCTCCCGTCAGCCTGCCTCGTCCCCGCCAAAG
CAGTCGTCCTCTACATCCGCCTCCAACAGCACTAACCGGCCTCGCTCGGG
GAGCAGCAGCAGCAGCGGGAGCGGGGGCAACTCGAGACACAAAGGTGGGA
AGCGAAAAGCCAGCACGGTCAAGGCGCAAGCTGCGGCCATGGGCGTGACA
CTGGGCGTTTCGCCTCGCTCGGCCGCTGCTTTGAATAAGTTGCAGCGTTA
TAATCAGGAGTTGGAGGCCCTTGAGAATGAAGTGGCAGACATGGAGGCAG
CGTTACAAGACTATCCCCGCACGCCCCGATCCCGGCTGTTGGAAGCTAAG
GATCAGATTGCCCAGATGAATGGGAGTTTGGAGAAGCTCCAGTACAGTGG
CGTCGATTCTATTATAACAGCTGAATTGGAGAGTGGGAAGGAACGGGCGA
AGGAGAAGCGGAAGTCGTTGAACCAACGGTGTGATGCTTTAAGGGAGCGG
ATTTTGCAGGATTCGAAGGATTTGCAGAAGATGCTGGCGGCTGGGGGTGG
GAGGTAG
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Coding sequence (CDS) from alignment at chr2:1164805..1165461+

>NO02G04290.1 ID=NO02G04290.1|Name=NO02G04290.1|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at chr2:1164805..1165461+ (Nannochloropsis oceanica)
ATGATGAGCCGGTTTGCGTCCTTCTTTGGGCGCGCCGCCGAGGACGAAGA
CGAGGAAGCCAACGCCTCTGCCCCAGCTCCCACGCCTGCAACTGTCCCGC
ACCAGTCCACTCGCCATTCCTCCCGTCAGCCTGCCTCGTCCCCGCCAAAG
CAGTCGTCCTCTACATCCGCCTCCAACAGCACTAACCGGCCTCGCTCGGG
GAGCAGCAGCAGCAGCGGGAGCGGGGGCAACTCGAGACACAAAGGTGGGA
AGCGAAAAGCCAGCACGGTCAAGGCGCAAGCTGCGGCCATGGGCGTGACA
CTGGGCGTTTCGCCTCGCTCGGCCGCTGCTTTGAATAAGTTGCAGCGTTA
TAATCAGGAGTTGGAGGCCCTTGAGAATGAAGTGGCAGACATGGAGGCAG
CGTTACAAGACTATCCCCGCACGCCCCGATCCCGGCTGTTGGAAGCTAAG
GATCAGATTGCCCAGATGAATGGGAGTTTGGAGAAGCTCCAGTACAGTGG
CGTCGATTCTATTATAACAGCTGAATTGGAGAGTGGGAAGGAACGGGCGA
AGGAGAAGCGGAAGTCGTTGAACCAACGGTGTGATGCTTTAAGGGAGCGG
ATTTTGCAGGATTCGAAGGATTTGCAGAAGATGCTGGCGGCTGGGGGTGG
GAGGTAG
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Synonyms
Publications