NO02G04280.1, NO02G04280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04280.1
Unique NameNO02G04280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length618
Alignment locationchr2:1163240..1164442 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1163240..1164442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G04280.1 vs.
Match: EWM30266.1 (hypothetical protein Naga_100003g49 [Nannochloropsis gaditana])

HSP 1 Score: 266.5 bits (680), Expect = 6.700e-68
Identity = 139/201 (69.15%), Postives = 158/201 (78.61%), Query Frame = 0 
Query:    9 LFLSLMATAGAFFLPSAT----PHGTRMSAGREQDSSTSLERRDLLQNSVGQVLGLSALMLGRANLMGTPQQAQAAVGEGGLPAVTEAFQRVLRGQREWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEKRDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSDVPDEL 206
            L L+ +  A AF +P  +        R+SAG  +D  TSLERR  L NS+ Q + LS  M G A  +  P QA AAVGEGGLPAVTEAFQRV+RGQREW KVGKTIADREGKLAD EWVNTQIFLRNSYMVGEDMRR+VRD++  KR+KGTAIAK+FQRLTLDMDKP K KDFQGFIEAQKKGA+YF++F+ LLSDVPDEL
Sbjct:    8 LILATIVGAAAFVVPPLSLPSRDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGGLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
The following BLAST results are available for this feature:
BLAST of NO02G04280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30266.16.700e-6869.15hypothetical protein Naga_100003g49 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04280NO02G04280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04280.1NO02G04280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04280.1.cds1NO02G04280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04280.1.cds2NO02G04280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04280.1.cds3NO02G04280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04280.1.cds4NO02G04280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04280.1 ID=NO02G04280.1|Name=NO02G04280.1|organism=Nannochloropsis oceanica|type=mRNA|length=618bp
ATGATTCACAAGTGCGGCATCGTCCTATTTTTGTCCCTGATGGCGACGGC
AGGTGCGTTTTTTCTGCCTTCGGCCACTCCCCATGGTACCAGAATGAGCG
CCGGGCGGGAGCAGGACAGCAGCACGAGCTTGGAGCGTCGCGACCTCCTG
CAAAACTCGGTGGGCCAGGTGCTGGGTTTGTCGGCACTCATGCTAGGCAG
GGCTAATCTCATGGGGACGCCGCAACAGGCGCAGGCAGCAGTGGGGGAGG
GTGGTCTCCCTGCTGTGACAGAGGCTTTTCAGCGCGTGCTTCGGGGCCAA
CGGGAGTGGGCTAAGGTGGGCAAGACCATTGCGGACCGAGAGGGGAAGCT
GGCGGATGCTGAGTGGGTGAACACGCAAATCTTCTTGCGCAATTCGTACA
TGGTGGGCGAGGACATGCGCCGGGTGGTCCGCGACTCGGACGGAGAAAAG
CGGGATAAGGGTACAGCCATCGCCAAAGAGTTCCAACGTTTGACACTGGA
CATGGACAAGCCTGCCAAGGGCAAAGATTTCCAGGGGTTCATTGAAGCGC
AGAAGAAAGGCGCGGCCTACTTTGAAGAATTTCTTGCCTTATTGAGTGAT
GTGCCGGACGAGCTGTAA
back to top

protein sequence of NO02G04280.1

>NO02G04280.1-protein ID=NO02G04280.1-protein|Name=NO02G04280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MIHKCGIVLFLSLMATAGAFFLPSATPHGTRMSAGREQDSSTSLERRDLL
QNSVGQVLGLSALMLGRANLMGTPQQAQAAVGEGGLPAVTEAFQRVLRGQ
REWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEK
RDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSD
VPDEL*
back to top

mRNA from alignment at chr2:1163240..1164442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04280.1 ID=NO02G04280.1|Name=NO02G04280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp|location=Sequence derived from alignment at chr2:1163240..1164442- (Nannochloropsis oceanica)
ATGATTCACAAGTGCGGCATCGTCCTATTTTTGTCCCTGATGGCGACGGC
AGGTGCGTTTTTTCTGCCTTCGGCCACTCCCCATGGTACCAGAATGAGCG
CCGGGCGGGAGCAGGACAGCAGCACGAGCTTGGAGCGTCGCGACCTCCTG
CAAAACTCGGTGGGCCAGGTGCTGGGTTTGTCGGCACTCATGCTAGGCAG
GGCTAATCTCATGGGGACGCCGCAACAGGCGCAGGCAGCAGTGGGGGAGG
GTACGTTTACGGATGGGGAAAGAATTATGTGCAGCGCTGTAGCAGAATGT
ATGGATGGAGTAAAGCACACATACAGGTATCGCCCGACCACTTTCATTCA
CACACGAAAATGAAACTTGTGCATCGTTTTAGGTGGTCTCCCTGCTGTGA
CAGAGGCTTTTCAGCGCGTGCTTCGGGGCCAACGGGAGTGGGCTAAGGTG
GGCAAGACCATTGCGGACCGAGAGGGGAAGCTGGCGGATGCTGAGTGGGT
GAACACGCAAATCTTCTTGCGGTGCGTTCAAAGAGGGATTGGGGGAAGAG
GGTGTTTGGTTCCCAAAAATAATTGCTAGCCGAAAAATGGTAGGGAGAGT
AATGAGGGGCCGAGCTGGAAGGAGGAAGACTAGAAACCCCTCACGCGCGC
CGTTGGGCGCTCGTCCAGCCGAGGCACCAGAATGTCCGTCCCTCCTTCTT
TATGGGTATCGATAAAACCGTCACTGCTCATCTAACCCCCTCCCACACCC
AGCAATTCGTACATGGTGGGCGAGGACATGCGCCGGGTGGTCCGCGACTC
GGACGGAGAAAAGCGGGTAGGTCATGAAGAAGGCGAAGGATGGAAGGAGG
GTGACTCCACGGAAAAGTGGATGGATGAGATGTATGCTTGCATCAGCCGT
TAGCCAGTTTTCTTGATTGTTTCAGTCGCGTACATTCGTAGTAAGGGAAT
CAAGTCCTGCTCCGTGACTCATGAACTCGCCACCTCTCACCCCTCTTTCT
CGCCTTCCTCTTGTCCCTTCCCAACCCAATTGAAACAGGATAAGGGTACA
GCCATCGCCAAAGAGTTCCAACGTTTGACACTGGACATGGACAAGCCTGC
CAAGGGCAAAGATTTCCAGGGGTTCATTGAAGCGCAGAAGAAAGGCGCGG
CCTACTTTGAAGAATTTCTTGCCTTATTGAGTGATGTGCCGGACGAGCTG
TAA
back to top

Coding sequence (CDS) from alignment at chr2:1163240..1164442-

>NO02G04280.1 ID=NO02G04280.1|Name=NO02G04280.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr2:1163240..1164442- (Nannochloropsis oceanica)
ATGATTCACAAGTGCGGCATCGTCCTATTTTTGTCCCTGATGGCGACGGC
AGGTGCGTTTTTTCTGCCTTCGGCCACTCCCCATGGTACCAGAATGAGCG
CCGGGCGGGAGCAGGACAGCAGCACGAGCTTGGAGCGTCGCGACCTCCTG
CAAAACTCGGTGGGCCAGGTGCTGGGTTTGTCGGCACTCATGCTAGGCAG
GGCTAATCTCATGGGGACGCCGCAACAGGCGCAGGCAGCAGTGGGGGAGG
GTGGTCTCCCTGCTGTGACAGAGGCTTTTCAGCGCGTGCTTCGGGGCCAA
CGGGAGTGGGCTAAGGTGGGCAAGACCATTGCGGACCGAGAGGGGAAGCT
GGCGGATGCTGAGTGGGTGAACACGCAAATCTTCTTGCGCAATTCGTACA
TGGTGGGCGAGGACATGCGCCGGGTGGTCCGCGACTCGGACGGAGAAAAG
CGGGATAAGGGTACAGCCATCGCCAAAGAGTTCCAACGTTTGACACTGGA
CATGGACAAGCCTGCCAAGGGCAAAGATTTCCAGGGGTTCATTGAAGCGC
AGAAGAAAGGCGCGGCCTACTTTGAAGAATTTCTTGCCTTATTGAGTGAT
GTGCCGGACGAGCTGTAA
back to top
Synonyms
Publications