NO02G04240.1, NO02G04240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04240.1
Unique NameNO02G04240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1313
Alignment locationchr2:1153149..1154461 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1153149..1154461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04240.1 vs.
Match: EWM30277.1 (protein of unknown function DUF4392 [Nannochloropsis gaditana])

HSP 1 Score: 359.8 bits (922), Expect = 9.800e-96
Identity = 202/351 (57.55%), Postives = 241/351 (68.66%), Query Frame = 0 
Query:    1 MSSTAAVIATLEAAVQRDEGKRGLTDLVLPAGELETAASALYHAPGPIAILTGFPCMLDHIPPTETDGPPGALAIIQACLALNKPCILLVEESNAAVLSAGVAAVED-MSVNLRVEVFPPKTKWGPTEDARLCQLAQEITFVVAIERTGPGASDGHYYTMRGKQMDEVVAPLERLLDLVPESVHSIGIGDGGNEVGMGKVLDRILASTIISKARQIACCTSTSWLLAASVSNWGGYALCCALAAVAAEVEATYT---TAKRGKDGDKIKTDCMSNAKGMRNPANDGMGRRRGKWVERLVVSEAQDQRVLEAIVAAGARDGITGERKEWVDGMPKETSSAMLRELREIARSN 348
            +SS + +I  LE  VQ DEG RGL DL+ PAGELE AA AL  A  PIAILTGFPC+L+H PPTETDGPPGALAII+AC+ L K CILL ++ NAAV+ A VAA    +S +L++E FP K++W   E  RL +L  E+ FVVAIER GP A DGHYYTMRG+ MD  VAPLE+L+ L   ++ S+GIGDGGNE+GMGK  +RI+ S  I  A +IAC T+T+WLLAASVSNWGGYAL CALA VAAE+E   T   T     +GD +        K   +P  D    RR +WV+RLV SEAQ    L  +VAAGARDGITGER   VDGMP   S  MLR LRE AR +
Sbjct:    2 VSSASRIIYRLETIVQHDEGGRGLKDLIQPAGELEMAARALQRASSPIAILTGFPCLLEHTPPTETDGPPGALAIIRACIGLGKTCILLTDQCNAAVIQAAVAADSPYISASLQIETFPAKSEWTDVEICRLRRLGCEVGFVVAIERAGP-ARDGHYYTMRGRCMDTFVAPLEQLMSLTRPAIESLGIGDGGNELGMGKAWERIVGSASIPHASRIACVTATTWLLAASVSNWGGYALSCALAVVAAEIEEKETGPRTWSFTSEGDGV-----GPWKAGTDP--DQWQARRNEWVDRLVPSEAQASSTLGGMVAAGARDGITGERTTRVDGMPGAVSLQMLRRLRETAREH 344
The following BLAST results are available for this feature:
BLAST of NO02G04240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30277.19.800e-9657.55protein of unknown function DUF4392 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04240NO02G04240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04240.1NO02G04240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04240.1.cds1NO02G04240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04240.1 ID=NO02G04240.1|Name=NO02G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1313bp
ACAGGCTTCGCACACAGCACACCCCGTAATCAAGGTCATTGATGAGCCGT
GGAAGCCATGGCTTTGATCATGGAACTTGCAGTCGTTAAGTAATTGTCTT
CCCGGTACACTGTCTTTCAGCCACAGCCACAGCCACAGCCATAGCACACA
AGTATGCGAGCATGTCCAGCACTGCGGCAGTAATTGCTACCCTGGAAGCC
GCCGTGCAGCGGGACGAGGGTAAACGAGGCTTGACTGACCTGGTGCTGCC
AGCGGGCGAGCTGGAGACGGCTGCCAGTGCTCTCTACCATGCCCCAGGCC
CCATCGCCATCCTCACCGGATTCCCCTGCATGCTCGACCACATCCCGCCC
ACCGAGACAGATGGCCCACCAGGCGCATTAGCCATTATCCAAGCTTGTCT
TGCGCTCAACAAACCTTGCATTCTATTGGTTGAGGAAAGCAATGCTGCCG
TGCTTAGTGCTGGCGTGGCCGCTGTCGAGGACATGTCAGTCAATCTGCGC
GTAGAGGTCTTTCCACCCAAAACAAAGTGGGGACCGACTGAAGACGCCCG
CCTTTGCCAGCTTGCTCAAGAAATTACTTTCGTGGTGGCCATCGAGCGGA
CGGGCCCGGGAGCTAGCGATGGGCATTACTATACGATGCGCGGAAAACAA
ATGGATGAGGTGGTGGCTCCCCTGGAACGATTGCTGGATTTAGTGCCGGA
GTCTGTGCACAGCATCGGCATCGGAGACGGAGGAAATGAAGTAGGGATGG
GCAAAGTTTTGGACCGAATATTGGCTTCAACAATCATATCAAAGGCGAGG
CAGATTGCGTGTTGCACAAGCACGTCGTGGTTGCTGGCGGCCTCGGTCAG
TAATTGGGGTGGATACGCTTTATGCTGCGCACTGGCAGCAGTGGCAGCAG
AAGTAGAAGCAACATATACAACTGCCAAGAGGGGGAAAGATGGAGATAAG
ATCAAGACTGACTGCATGTCTAACGCTAAAGGCATGAGAAACCCGGCAAA
TGATGGGATGGGCAGAAGAAGGGGGAAATGGGTAGAGCGGTTGGTAGTAT
CCGAGGCACAAGATCAAAGAGTGCTTGAGGCGATTGTGGCAGCAGGGGCT
AGGGATGGAATCACCGGAGAGAGAAAAGAATGGGTGGATGGGATGCCGAA
AGAGACCTCTTCGGCTATGCTGCGAGAGCTGCGGGAGATTGCGAGGAGCA
ATTAGATGTAAATGTACAATTGGTTGTGGATGAAGATTGACGCTCTCCTT
TTCAGAATCAACATAACTTCAGAGCAGCTGCTGTGCCCTTATTCCGATAA
AGAAATCTGTTTC
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protein sequence of NO02G04240.1

>NO02G04240.1-protein ID=NO02G04240.1-protein|Name=NO02G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MSSTAAVIATLEAAVQRDEGKRGLTDLVLPAGELETAASALYHAPGPIAI
LTGFPCMLDHIPPTETDGPPGALAIIQACLALNKPCILLVEESNAAVLSA
GVAAVEDMSVNLRVEVFPPKTKWGPTEDARLCQLAQEITFVVAIERTGPG
ASDGHYYTMRGKQMDEVVAPLERLLDLVPESVHSIGIGDGGNEVGMGKVL
DRILASTIISKARQIACCTSTSWLLAASVSNWGGYALCCALAAVAAEVEA
TYTTAKRGKDGDKIKTDCMSNAKGMRNPANDGMGRRRGKWVERLVVSEAQ
DQRVLEAIVAAGARDGITGERKEWVDGMPKETSSAMLRELREIARSN*
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mRNA from alignment at chr2:1153149..1154461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04240.1 ID=NO02G04240.1|Name=NO02G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1313bp|location=Sequence derived from alignment at chr2:1153149..1154461- (Nannochloropsis oceanica)
ACAGGCTTCGCACACAGCACACCCCGTAATCAAGGTCATTGATGAGCCGT
GGAAGCCATGGCTTTGATCATGGAACTTGCAGTCGTTAAGTAATTGTCTT
CCCGGTACACTGTCTTTCAGCCACAGCCACAGCCACAGCCATAGCACACA
AGTATGCGAGCATGTCCAGCACTGCGGCAGTAATTGCTACCCTGGAAGCC
GCCGTGCAGCGGGACGAGGGTAAACGAGGCTTGACTGACCTGGTGCTGCC
AGCGGGCGAGCTGGAGACGGCTGCCAGTGCTCTCTACCATGCCCCAGGCC
CCATCGCCATCCTCACCGGATTCCCCTGCATGCTCGACCACATCCCGCCC
ACCGAGACAGATGGCCCACCAGGCGCATTAGCCATTATCCAAGCTTGTCT
TGCGCTCAACAAACCTTGCATTCTATTGGTTGAGGAAAGCAATGCTGCCG
TGCTTAGTGCTGGCGTGGCCGCTGTCGAGGACATGTCAGTCAATCTGCGC
GTAGAGGTCTTTCCACCCAAAACAAAGTGGGGACCGACTGAAGACGCCCG
CCTTTGCCAGCTTGCTCAAGAAATTACTTTCGTGGTGGCCATCGAGCGGA
CGGGCCCGGGAGCTAGCGATGGGCATTACTATACGATGCGCGGAAAACAA
ATGGATGAGGTGGTGGCTCCCCTGGAACGATTGCTGGATTTAGTGCCGGA
GTCTGTGCACAGCATCGGCATCGGAGACGGAGGAAATGAAGTAGGGATGG
GCAAAGTTTTGGACCGAATATTGGCTTCAACAATCATATCAAAGGCGAGG
CAGATTGCGTGTTGCACAAGCACGTCGTGGTTGCTGGCGGCCTCGGTCAG
TAATTGGGGTGGATACGCTTTATGCTGCGCACTGGCAGCAGTGGCAGCAG
AAGTAGAAGCAACATATACAACTGCCAAGAGGGGGAAAGATGGAGATAAG
ATCAAGACTGACTGCATGTCTAACGCTAAAGGCATGAGAAACCCGGCAAA
TGATGGGATGGGCAGAAGAAGGGGGAAATGGGTAGAGCGGTTGGTAGTAT
CCGAGGCACAAGATCAAAGAGTGCTTGAGGCGATTGTGGCAGCAGGGGCT
AGGGATGGAATCACCGGAGAGAGAAAAGAATGGGTGGATGGGATGCCGAA
AGAGACCTCTTCGGCTATGCTGCGAGAGCTGCGGGAGATTGCGAGGAGCA
ATTAGATGTAAATGTACAATTGGTTGTGGATGAAGATTGACGCTCTCCTT
TTCAGAATCAACATAACTTCAGAGCAGCTGCTGTGCCCTTATTCCGATAA
AGAAATCTGTTTC
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Coding sequence (CDS) from alignment at chr2:1153149..1154461-

>NO02G04240.1 ID=NO02G04240.1|Name=NO02G04240.1|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr2:1153149..1154461- (Nannochloropsis oceanica)
ATGTCCAGCACTGCGGCAGTAATTGCTACCCTGGAAGCCGCCGTGCAGCG
GGACGAGGGTAAACGAGGCTTGACTGACCTGGTGCTGCCAGCGGGCGAGC
TGGAGACGGCTGCCAGTGCTCTCTACCATGCCCCAGGCCCCATCGCCATC
CTCACCGGATTCCCCTGCATGCTCGACCACATCCCGCCCACCGAGACAGA
TGGCCCACCAGGCGCATTAGCCATTATCCAAGCTTGTCTTGCGCTCAACA
AACCTTGCATTCTATTGGTTGAGGAAAGCAATGCTGCCGTGCTTAGTGCT
GGCGTGGCCGCTGTCGAGGACATGTCAGTCAATCTGCGCGTAGAGGTCTT
TCCACCCAAAACAAAGTGGGGACCGACTGAAGACGCCCGCCTTTGCCAGC
TTGCTCAAGAAATTACTTTCGTGGTGGCCATCGAGCGGACGGGCCCGGGA
GCTAGCGATGGGCATTACTATACGATGCGCGGAAAACAAATGGATGAGGT
GGTGGCTCCCCTGGAACGATTGCTGGATTTAGTGCCGGAGTCTGTGCACA
GCATCGGCATCGGAGACGGAGGAAATGAAGTAGGGATGGGCAAAGTTTTG
GACCGAATATTGGCTTCAACAATCATATCAAAGGCGAGGCAGATTGCGTG
TTGCACAAGCACGTCGTGGTTGCTGGCGGCCTCGGTCAGTAATTGGGGTG
GATACGCTTTATGCTGCGCACTGGCAGCAGTGGCAGCAGAAGTAGAAGCA
ACATATACAACTGCCAAGAGGGGGAAAGATGGAGATAAGATCAAGACTGA
CTGCATGTCTAACGCTAAAGGCATGAGAAACCCGGCAAATGATGGGATGG
GCAGAAGAAGGGGGAAATGGGTAGAGCGGTTGGTAGTATCCGAGGCACAA
GATCAAAGAGTGCTTGAGGCGATTGTGGCAGCAGGGGCTAGGGATGGAAT
CACCGGAGAGAGAAAAGAATGGGTGGATGGGATGCCGAAAGAGACCTCTT
CGGCTATGCTGCGAGAGCTGCGGGAGATTGCGAGGAGCAATTAG
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Synonyms
Publications