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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1146453..1149172 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04200.2 vs.
Match: EWM30231.1 (hypothetical protein Naga_100003g56 [Nannochloropsis gaditana]) HSP 1 Score: 594.0 bits (1530), Expect = 6.400e-166 Identity = 373/704 (52.98%), Postives = 454/704 (64.49%), Query Frame = 0
Query: 1 MEFEQALYRVYDRSLDSLLQDRPLIDDVPQSKPRHLCTVCLHTLWFLALTMITCVIGLHANFVNDPGCLHTTMQSAFEGNRSSILPP-----TSHAGPSRLRWLRGLAKNGHTEGGNDNAPAAPAAALPLPTTMPDPRNVSTWMGEDEILQIRIAQSGLHVTEEEEE----------GAAWWSQAGESSSSSSRSSNNSSDSSSSTDVIFVPDYIYTSNTPLLYLDSGFLARHEVKRINVTLDEMCVTKGPGLGFVVGAVVGDLDTIIINQLMYTFRSDGTARNMRTNETWSWRGSSLPPVGGYRLFTLDGWVSRLFALLRSLLALFFLSGTTAIVVRMLMTSGVALMYPFFFCLRRMGVTGLSFRVLTRSYAWLGVPLERLRARGKPLAPFLLAHLSKMVVVYVMYEACQVFWVETLYGKSGGSGMAFAVFGLVMLMEYVSMLYVRSALSIRYFPRVVLFYLLAFHLYYYLVPYGEQSDLIPTRPKSRPIFYVAF-LFLYLRPKITHRFAPFLYPSVPPLPAGFTSQLLLATALLLLHAVLYILLFLELPAFRASIISHDTPRAFYTDTGLPSHPHSIPPSWSLFLPLTLGRRGGRGEGRGGGGRGGGGVYDEEVPERPVGGLVLGGRLQALIVEVEEGRQERRGRQQRNEQQEQQQLAMGHTEEEEKEGGAFMMVGGEG-NEEGHVALAVRGQRGDAGEREE 688
M+FEQALYRVYDR+LD LLQDRPL+++VPQ+KPR+LC +CLH LWF ALT++T GLH NFVN PGCL+TTMQ+ +EG+ S L T+ AG S L +R E GN +LPL PDPRN STW+ +DEILQIRI QSG+++ EE A ++ GE+ +S + N +DS+ + F PDY+Y NT LLYLD FL+RH V+R+NV+LDEMC+TKGPGLGFVV VGD +T+++NQLM+TFRSDG R RTNETWSWR SLPP G F+LD W +L ALL+SL A FFLSGTTAIVVRMLMTSGVALMYP FFCLRR+G GLS VL RSYAWLGVP++RL+ARGKPLAPFLLAHL K++V+Y MYEACQVF+VET LY +S S F Y L L Y + Y + I P+ ++ +AF L+ YL +P GF+S LLLA +LLLLH+V+Y+LLFLELPAFRASI+S+DTPRAFYTDTGLP+HP+SIPPSWSLFLPLTLGRRG G GRGG G GVY+EEVP+RP G + R+Q +IVE E RQ+R + R Q+EQ+ EEKEG +GGE NEEG L V G G + E
Sbjct: 1 MDFEQALYRVYDRTLDGLLQDRPLVENVPQTKPRYLCNICLHGLWFFALTLLTIFWGLHLNFVNSPGCLYTTMQTMYEGSEISHLATQPSFTTARAGSSTLSVVR--------EDGNKTL----GKSLPLRAA-PDPRNASTWLEDDEILQIRIEQSGVYMAEEGGRKGPGRRMRGYSAFPGAERGEAGTSETTEIINDADSNDTALSSFNPDYVYAQNTALLYLDPAFLSRHRVRRVNVSLDEMCMTKGPGLGFVVDVAVGDFNTLLVNQLMFTFRSDGMLRKTRTNETWSWRAESLPPPRGRPFFSLDNWSLKLSALLQSLSAFFFLSGTTAIVVRMLMTSGVALMYPCFFCLRRLGARGLSLGVLARSYAWLGVPMQRLQARGKPLAPFLLAHLCKVLVLYSMYEACQVFFVET--------------------------LYAKSGASGLPFA----VYGLVMLLEYVSMLYVRSALSIKYFPRVVFLYLLAFHLYYYL------------------VPFGFSSLLLLAISLLLLHSVIYVLLFLELPAFRASIVSYDTPRAFYTDTGLPAHPNSIPPSWSLFLPLTLGRRGDDG-GRGGAG----GVYEEEVPDRPRRGAGV-VRVQQVIVERVESRQQR--TRSRRGQEEQR-------GGEEKEGN----LGGEARNEEGEAELGVAGYDGSPRDTME 624
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04200.2 ID=NO02G04200.2|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp ACAGACACTAACACAGCGGGAAGTACAATCGTGGCTTGCTGGGTACTGGG TGTCGTGTTGTCGTGAAAGCAGCAGGGAGAAGAGGTAGGGGCAGCAGCAG GACGGGACACTCCAGGCAGCCACAGGCAAGCCGAGAGACAGGCCAGACAA CCTGCGTGTAGGGACGCCTACTCCACAATTTTGCTTCCATGGAGTTTGAG CAGGCATTGTATCGTGTGTACGATCGCTCCTTGGACAGCCTCCTGCAAGA CCGCCCGCTTATCGATGATGTCCCTCAAAGCAAGCCTCGGCATCTCTGCA CCGTCTGCCTCCACACCCTTTGGTTCCTGGCCCTCACCATGATAACCTGT GTAATAGGCCTTCACGCTAATTTTGTCAATGACCCCGGATGTCTCCATAC GACAATGCAAAGTGCGTTTGAAGGCAACAGGAGCAGCATTCTTCCTCCCA CATCTCATGCGGGCCCGTCACGCTTGCGCTGGCTGCGTGGACTGGCAAAG AATGGCCACACAGAGGGCGGAAATGACAATGCTCCAGCTGCTCCAGCTGC GGCCCTTCCTCTCCCAACAACAATGCCAGACCCGAGAAATGTTTCAACCT GGATGGGAGAAGACGAGATTTTGCAAATAAGAATAGCGCAGTCCGGGTTA CATGTTACGGAGGAGGAGGAGGAAGGAGCGGCATGGTGGAGCCAAGCTGG GGAGAGCAGCAGCAGCAGCAGCCGCAGCAGCAACAACAGTAGTGACAGTA GTTCTAGTACAGACGTGATTTTTGTGCCTGATTACATTTATACGAGCAAC ACCCCCTTGCTTTACCTTGACTCGGGTTTCCTGGCCCGTCATGAGGTGAA ACGAATCAACGTCACGCTGGACGAGATGTGTGTCACAAAGGGCCCGGGGC TCGGGTTCGTGGTGGGGGCGGTCGTGGGGGATTTGGATACAATAATCATA AATCAGCTGATGTATACCTTTCGAAGCGATGGGACGGCTAGAAACATGCG TACGAATGAGACCTGGAGTTGGCGGGGCTCCTCTTTGCCACCTGTTGGGG GGTACCGCCTTTTCACCCTAGACGGGTGGGTGTCTCGACTATTTGCGTTG CTGAGGTCCTTGTTGGCATTATTCTTCCTGTCAGGGACCACGGCGATTGT CGTGAGGATGCTTATGACGAGTGGAGTGGCGTTGATGTACCCCTTCTTTT TTTGTTTGAGGCGGATGGGTGTCACAGGATTAAGTTTTCGGGTCTTAACG CGGAGCTACGCTTGGTTGGGCGTTCCTTTGGAGAGGCTGCGGGCGAGGGG AAAGCCATTGGCGCCTTTCTTACTGGCGCACTTGTCGAAGATGGTTGTGG TGTACGTGATGTACGAGGCCTGTCAAGTGTTTTGGGTGGAGACGTTGTAT GGCAAAAGTGGGGGGAGCGGGATGGCCTTTGCCGTGTTTGGGCTGGTGAT GTTGATGGAGTATGTGTCGATGCTCTATGTCAGAAGTGCATTAAGCATCA GGTACTTCCCCCGCGTGGTCCTCTTCTACCTCCTTGCCTTCCACTTGTAC TACTACCTTGTCCCATACGGTGAGCAATCCGATTTAATACCTACCCGCCC AAAGTCTCGTCCCATTTTCTATGTCGCCTTTCTGTTTTTATATTTGAGGC CGAAAATCACCCATCGATTTGCTCCCTTTCTCTACCCCTCTGTCCCTCCC TTACCCGCAGGTTTCACCTCCCAGCTCCTGCTTGCTACCGCGCTCCTTCT CCTCCATGCCGTCCTCTACATTTTACTATTTCTCGAGCTGCCCGCCTTTC GCGCCTCCATCATCTCCCACGACACCCCTCGGGCTTTCTACACTGACACC GGCCTCCCCTCCCACCCTCACTCCATCCCTCCTTCCTGGTCCTTGTTTTT GCCACTTACCTTGGGAAGACGCGGAGGAAGGGGAGAAGGGAGGGGAGGAG GGGGGCGAGGAGGAGGGGGAGTATATGACGAGGAGGTGCCTGAGAGACCG GTGGGAGGGCTAGTGTTGGGGGGAAGGCTGCAGGCGTTGATTGTAGAAGT GGAGGAGGGGAGGCAGGAGAGGAGGGGGAGGCAACAGCGCAATGAGCAGC AGGAGCAGCAGCAGCTAGCAATGGGGCATACGGAGGAGGAGGAGAAGGAA GGGGGTGCATTTATGATGGTGGGAGGGGAAGGAAATGAGGAGGGACATGT TGCCTTGGCAGTGCGGGGACAGAGGGGAGATGCGGGAGAACGAGAAGAAG GAAGGCCGGACGATGCGTCGGAGGAGGGGGAAGAGGGAGGACAGGAGGAA GGCCCTGGCTTCGGCAGACGCCGAGGCTACCAGCGGTTGAGGAACGACGA ACGCTTTTAA back to topprotein sequence of NO02G04200.2 >NO02G04200.2-protein ID=NO02G04200.2-protein|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp MEFEQALYRVYDRSLDSLLQDRPLIDDVPQSKPRHLCTVCLHTLWFLALT MITCVIGLHANFVNDPGCLHTTMQSAFEGNRSSILPPTSHAGPSRLRWLR GLAKNGHTEGGNDNAPAAPAAALPLPTTMPDPRNVSTWMGEDEILQIRIA QSGLHVTEEEEEGAAWWSQAGESSSSSSRSSNNSSDSSSSTDVIFVPDYI YTSNTPLLYLDSGFLARHEVKRINVTLDEMCVTKGPGLGFVVGAVVGDLD TIIINQLMYTFRSDGTARNMRTNETWSWRGSSLPPVGGYRLFTLDGWVSR LFALLRSLLALFFLSGTTAIVVRMLMTSGVALMYPFFFCLRRMGVTGLSF RVLTRSYAWLGVPLERLRARGKPLAPFLLAHLSKMVVVYVMYEACQVFWV ETLYGKSGGSGMAFAVFGLVMLMEYVSMLYVRSALSIRYFPRVVLFYLLA FHLYYYLVPYGEQSDLIPTRPKSRPIFYVAFLFLYLRPKITHRFAPFLYP SVPPLPAGFTSQLLLATALLLLHAVLYILLFLELPAFRASIISHDTPRAF YTDTGLPSHPHSIPPSWSLFLPLTLGRRGGRGEGRGGGGRGGGGVYDEEV PERPVGGLVLGGRLQALIVEVEEGRQERRGRQQRNEQQEQQQLAMGHTEE EEKEGGAFMMVGGEGNEEGHVALAVRGQRGDAGEREEGRPDDASEEGEEG GQEEGPGFGRRRGYQRLRNDERF* back to topmRNA from alignment at chr2:1146453..1149172+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04200.2 ID=NO02G04200.2|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=mRNA|length=2720bp|location=Sequence derived from alignment at chr2:1146453..1149172+ (Nannochloropsis oceanica) ACAGACACTAACACAGCGGGAAGTACAATCGTGGCTTGCTGGGTACTGGG
TGTCGTGTTGTCGTGAAAGCAGCAGGGAGAAGAGGTAGGGGCAGCAGCAG
GACGGGACACTCCAGGCAGCCACAGGCAAGCCGAGAGACAGGCCAGACAA
CCTGCGTGTAGGGACGCCTACTCCACAATTTTGCTTCCATGGAGTTTGAG
CAGGTGCGTTTCACGGCTGCCAGTCACAGCACAAGCTCGTCAGCCCGTCG
GTCTCTCTCCCCTCCTTCCCCTTGACTTGTAACCCGACCTCACCTCACCA
ACGTTTCCATCCTACTCTCCTTTCCTTACACGCAAGGCATTGTATCGTGT
GTACGATCGCTCCTTGGACAGCCTCCTGCAAGACCGCCCGCTTATCGATG
ATGTCCCTCAAAGCAAGCCTCGGCATCTCTGCACCGTCTGCCTCCACACC
CTTTGGTTCCTGGCCCTCACCATGATAACCTGTGTAATAGGCCTTCACGC
TAATTTTGTCAATGACCCCGGATGTCTCCATACGACAATGCAAAGTGCGT
TTGAAGGCAACAGGAGCAGCATTCTTCCTCCCACATCTCATGCGGGCCCG
TCACGCTTGCGCTGGCTGCGTGGACTGGCAAAGAATGGCCACACAGAGGG
CGGAAATGACAATGCTCCAGCTGCTCCAGCTGCGGCCCTTCCTCTCCCAA
CAACAATGCCAGACCCGAGAAATGTTTCAACCTGGATGGGAGAAGACGAG
ATTTTGCAAATAAGAATAGCGCAGTCCGGGTTACATGTTACGGAGGAGGA
GGAGGAAGGAGCGGCATGGTGGAGCCAAGCTGGGGAGAGCAGCAGCAGCA
GCAGCCGCAGCAGCAACAACAGTAGTGACAGTAGTTCTAGTACAGACGTG
ATTTTTGTGCCTGATTACATTTATACGAGCAACACCCCCTTGCTTTACCT
TGACTCGGGTTTCCTGGCCCGTCATGAGGTGAAACGAATCAACGTCACGC
TGGACGAGATGTGTGTCACAAAGGGCCCGGGGCTCGGGTTCGTGGTGGGG
GCGGTCGTGGGGGATTTGGATACAATAATCATAAATCAGCTGATGTATAC
CTTTCGAAGCGATGGGACGGCTAGAAACATGCGTACGAATGAGACCTGGA
GTTGGCGGGGCTCCTCTTTGCCACCTGTTGGGGGGTACCGCCTTTTCACC
CTAGACGGGTGGGTGTCTCGACTATTTGCGTTGCTGAGGTCCTTGTTGGC
ATTATTCTTCCTGTCAGGGACCACGGCGATTGTCGTGAGGATGCTTATGA
CGAGTGGAGTGGCGTTGATGTACCCCTTCTTTTTTTGTTTGAGGCGGATG
GGTGTCACAGGATTAAGTTTTCGGGTCTTAACGCGGAGCTACGCTTGGTT
GGGCGTTCCTTTGGAGAGGCTGCGGGCGAGGGGAAAGCCATTGGCGCCTT
TCTTACTGGCGCACTTGTCGAAGATGGTTGTGGTGTACGTGATGTACGAG
GCCTGTCAAGTGTTTTGGGTGGAGACGTTGTATGGCAAAAGTGGGGGGAG
CGGGATGGCCTTTGCCGTGTTTGGGCTGGTGATGTTGATGGAGTATGTGT
CGATGCTCTATGTCAGAAGTGGTAGGTAGGAAAGAAATGGCGGGGGGAGG
GGGAGGAAAGTTGGGGCTTGGAGGGTCTTATTTCAGGAGTCGTGAATAAA
GAAGGAGGAAGGGATGAGGGGAGGGAAGGAGGGTGGGAGGAGGTGAGGGG
TTTCTCGTGTGAGACGAACGGCGACTCTGAAAGGGGTTCTTGTGCTCCAT
GTTCTCACATAGCTCCTGTCCTGCATTCAATCCACTTCACTCACACAGCA
TTAAGCATCAGGTACTTCCCCCGCGTGGTCCTCTTCTACCTCCTTGCCTT
CCACTTGTACTACTACCTTGTCCCATACGGTGAGCAATCCGATTTAATAC
CTACCCGCCCAAAGTCTCGTCCCATTTTCTATGTCGCCTTTCTGTTTTTA
TATTTGAGGCCGAAAATCACCCATCGATTTGCTCCCTTTCTCTACCCCTC
TGTCCCTCCCTTACCCGCAGGTTTCACCTCCCAGCTCCTGCTTGCTACCG
CGCTCCTTCTCCTCCATGCCGTCCTCTACATTTTACTATTTCTCGAGCTG
CCCGCCTTTCGCGCCTCCATCATCTCCCACGACACCCCTCGGGCTTTCTA
CACTGACACCGGCCTCCCCTCCCACCCTCACTCCATCCCTCCTTCCTGGT
CCTTGTTTTTGCCACTTACCTTGGGAAGACGCGGAGGAAGGGGAGAAGGG
AGGGGAGGAGGGGGGCGAGGAGGAGGGGGAGTATATGACGAGGAGGTGCC
TGAGAGACCGGTGGGAGGGCTAGTGTTGGGGGGAAGGCTGCAGGCGTTGA
TTGTAGAAGTGGAGGAGGGGAGGCAGGAGAGGAGGGGGAGGCAACAGCGC
AATGAGCAGCAGGAGCAGCAGCAGCTAGCAATGGGGCATACGGAGGAGGA
GGAGAAGGAAGGGGGTGCATTTATGATGGTGGGAGGGGAAGGAAATGAGG
AGGGACATGTTGCCTTGGCAGTGCGGGGACAGAGGGGAGATGCGGGAGAA
CGAGAAGAAGGAAGGCCGGACGATGCGTCGGAGGAGGGGGAAGAGGGAGG
ACAGGAGGAAGGCCCTGGCTTCGGCAGACGCCGAGGCTACCAGCGGTTGA
GGAACGACGAACGCTTTTAA back to topCoding sequence (CDS) from alignment at chr2:1146453..1149172+ >NO02G04200.2 ID=NO02G04200.2|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at chr2:1146453..1149172+ (Nannochloropsis oceanica) ATGGAGTTTGAGCAGGCATTGTATCGTGTGTACGATCGCTCCTTGGACAG CCTCCTGCAAGACCGCCCGCTTATCGATGATGTCCCTCAAAGCAAGCCTC GGCATCTCTGCACCGTCTGCCTCCACACCCTTTGGTTCCTGGCCCTCACC ATGATAACCTGTGTAATAGGCCTTCACGCTAATTTTGTCAATGACCCCGG ATGTCTCCATACGACAATGCAAAGTGCGTTTGAAGGCAACAGGAGCAGCA TTCTTCCTCCCACATCTCATGCGGGCCCGTCACGCTTGCGCTGGCTGCGT GGACTGGCAAAGAATGGCCACACAGAGGGCGGAAATGACAATGCTCCAGC TGCTCCAGCTGCGGCCCTTCCTCTCCCAACAACAATGCCAGACCCGAGAA ATGTTTCAACCTGGATGGGAGAAGACGAGATTTTGCAAATAAGAATAGCG CAGTCCGGGTTACATGTTACGGAGGAGGAGGAGGAAGGAGCGGCATGGTG GAGCCAAGCTGGGGAGAGCAGCAGCAGCAGCAGCCGCAGCAGCAACAACA GTAGTGACAGTAGTTCTAGTACAGACGTGATTTTTGTGCCTGATTACATT TATACGAGCAACACCCCCTTGCTTTACCTTGACTCGGGTTTCCTGGCCCG TCATGAGGTGAAACGAATCAACGTCACGCTGGACGAGATGTGTGTCACAA AGGGCCCGGGGCTCGGGTTCGTGGTGGGGGCGGTCGTGGGGGATTTGGAT ACAATAATCATAAATCAGCTGATGTATACCTTTCGAAGCGATGGGACGGC TAGAAACATGCGTACGAATGAGACCTGGAGTTGGCGGGGCTCCTCTTTGC CACCTGTTGGGGGGTACCGCCTTTTCACCCTAGACGGGTGGGTGTCTCGA CTATTTGCGTTGCTGAGGTCCTTGTTGGCATTATTCTTCCTGTCAGGGAC CACGGCGATTGTCGTGAGGATGCTTATGACGAGTGGAGTGGCGTTGATGT ACCCCTTCTTTTTTTGTTTGAGGCGGATGGGTGTCACAGGATTAAGTTTT CGGGTCTTAACGCGGAGCTACGCTTGGTTGGGCGTTCCTTTGGAGAGGCT GCGGGCGAGGGGAAAGCCATTGGCGCCTTTCTTACTGGCGCACTTGTCGA AGATGGTTGTGGTGTACGTGATGTACGAGGCCTGTCAAGTGTTTTGGGTG GAGACGTTGTATGGCAAAAGTGGGGGGAGCGGGATGGCCTTTGCCGTGTT TGGGCTGGTGATGTTGATGGAGTATGTGTCGATGCTCTATGTCAGAAGTG CATTAAGCATCAGGTACTTCCCCCGCGTGGTCCTCTTCTACCTCCTTGCC TTCCACTTGTACTACTACCTTGTCCCATACGGTGAGCAATCCGATTTAAT ACCTACCCGCCCAAAGTCTCGTCCCATTTTCTATGTCGCCTTTCTGTTTT TATATTTGAGGCCGAAAATCACCCATCGATTTGCTCCCTTTCTCTACCCC TCTGTCCCTCCCTTACCCGCAGGTTTCACCTCCCAGCTCCTGCTTGCTAC CGCGCTCCTTCTCCTCCATGCCGTCCTCTACATTTTACTATTTCTCGAGC TGCCCGCCTTTCGCGCCTCCATCATCTCCCACGACACCCCTCGGGCTTTC TACACTGACACCGGCCTCCCCTCCCACCCTCACTCCATCCCTCCTTCCTG GTCCTTGTTTTTGCCACTTACCTTGGGAAGACGCGGAGGAAGGGGAGAAG GGAGGGGAGGAGGGGGGCGAGGAGGAGGGGGAGTATATGACGAGGAGGTG CCTGAGAGACCGGTGGGAGGGCTAGTGTTGGGGGGAAGGCTGCAGGCGTT GATTGTAGAAGTGGAGGAGGGGAGGCAGGAGAGGAGGGGGAGGCAACAGC GCAATGAGCAGCAGGAGCAGCAGCAGCTAGCAATGGGGCATACGGAGGAG GAGGAGAAGGAAGGGGGTGCATTTATGATGGTGGGAGGGGAAGGAAATGA GGAGGGACATGTTGCCTTGGCAGTGCGGGGACAGAGGGGAGATGCGGGAG AACGAGAAGAAGGAAGGCCGGACGATGCGTCGGAGGAGGGGGAAGAGGGA GGACAGGAGGAAGGCCCTGGCTTCGGCAGACGCCGAGGCTACCAGCGGTT GAGGAACGACGAACGCTTTTAA back to top
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