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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1146453..1149172 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04200.2 vs.
Match: EWM30231.1 (hypothetical protein Naga_100003g56 [Nannochloropsis gaditana]) HSP 1 Score: 594.0 bits (1530), Expect = 6.400e-166 Identity = 373/704 (52.98%), Postives = 454/704 (64.49%), Query Frame = 0
Query: 1 MEFEQALYRVYDRSLDSLLQDRPLIDDVPQSKPRHLCTVCLHTLWFLALTMITCVIGLHANFVNDPGCLHTTMQSAFEGNRSSILPP-----TSHAGPSRLRWLRGLAKNGHTEGGNDNAPAAPAAALPLPTTMPDPRNVSTWMGEDEILQIRIAQSGLHVTEEEEE----------GAAWWSQAGESSSSSSRSSNNSSDSSSSTDVIFVPDYIYTSNTPLLYLDSGFLARHEVKRINVTLDEMCVTKGPGLGFVVGAVVGDLDTIIINQLMYTFRSDGTARNMRTNETWSWRGSSLPPVGGYRLFTLDGWVSRLFALLRSLLALFFLSGTTAIVVRMLMTSGVALMYPFFFCLRRMGVTGLSFRVLTRSYAWLGVPLERLRARGKPLAPFLLAHLSKMVVVYVMYEACQVFWVETLYGKSGGSGMAFAVFGLVMLMEYVSMLYVRSALSIRYFPRVVLFYLLAFHLYYYLVPYGEQSDLIPTRPKSRPIFYVAF-LFLYLRPKITHRFAPFLYPSVPPLPAGFTSQLLLATALLLLHAVLYILLFLELPAFRASIISHDTPRAFYTDTGLPSHPHSIPPSWSLFLPLTLGRRGGRGEGRGGGGRGGGGVYDEEVPERPVGGLVLGGRLQALIVEVEEGRQERRGRQQRNEQQEQQQLAMGHTEEEEKEGGAFMMVGGEG-NEEGHVALAVRGQRGDAGEREE 688
M+FEQALYRVYDR+LD LLQDRPL+++VPQ+KPR+LC +CLH LWF ALT++T GLH NFVN PGCL+TTMQ+ +EG+ S L T+ AG S L +R E GN +LPL PDPRN STW+ +DEILQIRI QSG+++ EE A ++ GE+ +S + N +DS+ + F PDY+Y NT LLYLD FL+RH V+R+NV+LDEMC+TKGPGLGFVV VGD +T+++NQLM+TFRSDG R RTNETWSWR SLPP G F+LD W +L ALL+SL A FFLSGTTAIVVRMLMTSGVALMYP FFCLRR+G GLS VL RSYAWLGVP++RL+ARGKPLAPFLLAHL K++V+Y MYEACQVF+VET LY +S S F Y L L Y + Y + I P+ ++ +AF L+ YL +P GF+S LLLA +LLLLH+V+Y+LLFLELPAFRASI+S+DTPRAFYTDTGLP+HP+SIPPSWSLFLPLTLGRRG G GRGG G GVY+EEVP+RP G + R+Q +IVE E RQ+R + R Q+EQ+ EEKEG +GGE NEEG L V G G + E
Sbjct: 1 MDFEQALYRVYDRTLDGLLQDRPLVENVPQTKPRYLCNICLHGLWFFALTLLTIFWGLHLNFVNSPGCLYTTMQTMYEGSEISHLATQPSFTTARAGSSTLSVVR--------EDGNKTL----GKSLPLRAA-PDPRNASTWLEDDEILQIRIEQSGVYMAEEGGRKGPGRRMRGYSAFPGAERGEAGTSETTEIINDADSNDTALSSFNPDYVYAQNTALLYLDPAFLSRHRVRRVNVSLDEMCMTKGPGLGFVVDVAVGDFNTLLVNQLMFTFRSDGMLRKTRTNETWSWRAESLPPPRGRPFFSLDNWSLKLSALLQSLSAFFFLSGTTAIVVRMLMTSGVALMYPCFFCLRRLGARGLSLGVLARSYAWLGVPMQRLQARGKPLAPFLLAHLCKVLVLYSMYEACQVFFVET--------------------------LYAKSGASGLPFA----VYGLVMLLEYVSMLYVRSALSIKYFPRVVFLYLLAFHLYYYL------------------VPFGFSSLLLLAISLLLLHSVIYVLLFLELPAFRASIVSYDTPRAFYTDTGLPAHPNSIPPSWSLFLPLTLGRRGDDG-GRGGAG----GVYEEEVPDRPRRGAGV-VRVQQVIVERVESRQQR--TRSRRGQEEQR-------GGEEKEGN----LGGEARNEEGEAELGVAGYDGSPRDTME 624
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04200.2 ID=NO02G04200.2|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp
ACAGACACTAACACAGCGGGAAGTACAATCGTGGCTTGCTGGGTACTGGG
TGTCGTGTTGTCGTGAAAGCAGCAGGGAGAAGAGGTAGGGGCAGCAGCAG
GACGGGACACTCCAGGCAGCCACAGGCAAGCCGAGAGACAGGCCAGACAA
CCTGCGTGTAGGGACGCCTACTCCACAATTTTGCTTCCATGGAGTTTGAG
CAGGCATTGTATCGTGTGTACGATCGCTCCTTGGACAGCCTCCTGCAAGA
CCGCCCGCTTATCGATGATGTCCCTCAAAGCAAGCCTCGGCATCTCTGCA
CCGTCTGCCTCCACACCCTTTGGTTCCTGGCCCTCACCATGATAACCTGT
GTAATAGGCCTTCACGCTAATTTTGTCAATGACCCCGGATGTCTCCATAC
GACAATGCAAAGTGCGTTTGAAGGCAACAGGAGCAGCATTCTTCCTCCCA
CATCTCATGCGGGCCCGTCACGCTTGCGCTGGCTGCGTGGACTGGCAAAG
AATGGCCACACAGAGGGCGGAAATGACAATGCTCCAGCTGCTCCAGCTGC
GGCCCTTCCTCTCCCAACAACAATGCCAGACCCGAGAAATGTTTCAACCT
GGATGGGAGAAGACGAGATTTTGCAAATAAGAATAGCGCAGTCCGGGTTA
CATGTTACGGAGGAGGAGGAGGAAGGAGCGGCATGGTGGAGCCAAGCTGG
GGAGAGCAGCAGCAGCAGCAGCCGCAGCAGCAACAACAGTAGTGACAGTA
GTTCTAGTACAGACGTGATTTTTGTGCCTGATTACATTTATACGAGCAAC
ACCCCCTTGCTTTACCTTGACTCGGGTTTCCTGGCCCGTCATGAGGTGAA
ACGAATCAACGTCACGCTGGACGAGATGTGTGTCACAAAGGGCCCGGGGC
TCGGGTTCGTGGTGGGGGCGGTCGTGGGGGATTTGGATACAATAATCATA
AATCAGCTGATGTATACCTTTCGAAGCGATGGGACGGCTAGAAACATGCG
TACGAATGAGACCTGGAGTTGGCGGGGCTCCTCTTTGCCACCTGTTGGGG
GGTACCGCCTTTTCACCCTAGACGGGTGGGTGTCTCGACTATTTGCGTTG
CTGAGGTCCTTGTTGGCATTATTCTTCCTGTCAGGGACCACGGCGATTGT
CGTGAGGATGCTTATGACGAGTGGAGTGGCGTTGATGTACCCCTTCTTTT
TTTGTTTGAGGCGGATGGGTGTCACAGGATTAAGTTTTCGGGTCTTAACG
CGGAGCTACGCTTGGTTGGGCGTTCCTTTGGAGAGGCTGCGGGCGAGGGG
AAAGCCATTGGCGCCTTTCTTACTGGCGCACTTGTCGAAGATGGTTGTGG
TGTACGTGATGTACGAGGCCTGTCAAGTGTTTTGGGTGGAGACGTTGTAT
GGCAAAAGTGGGGGGAGCGGGATGGCCTTTGCCGTGTTTGGGCTGGTGAT
GTTGATGGAGTATGTGTCGATGCTCTATGTCAGAAGTGCATTAAGCATCA
GGTACTTCCCCCGCGTGGTCCTCTTCTACCTCCTTGCCTTCCACTTGTAC
TACTACCTTGTCCCATACGGTGAGCAATCCGATTTAATACCTACCCGCCC
AAAGTCTCGTCCCATTTTCTATGTCGCCTTTCTGTTTTTATATTTGAGGC
CGAAAATCACCCATCGATTTGCTCCCTTTCTCTACCCCTCTGTCCCTCCC
TTACCCGCAGGTTTCACCTCCCAGCTCCTGCTTGCTACCGCGCTCCTTCT
CCTCCATGCCGTCCTCTACATTTTACTATTTCTCGAGCTGCCCGCCTTTC
GCGCCTCCATCATCTCCCACGACACCCCTCGGGCTTTCTACACTGACACC
GGCCTCCCCTCCCACCCTCACTCCATCCCTCCTTCCTGGTCCTTGTTTTT
GCCACTTACCTTGGGAAGACGCGGAGGAAGGGGAGAAGGGAGGGGAGGAG
GGGGGCGAGGAGGAGGGGGAGTATATGACGAGGAGGTGCCTGAGAGACCG
GTGGGAGGGCTAGTGTTGGGGGGAAGGCTGCAGGCGTTGATTGTAGAAGT
GGAGGAGGGGAGGCAGGAGAGGAGGGGGAGGCAACAGCGCAATGAGCAGC
AGGAGCAGCAGCAGCTAGCAATGGGGCATACGGAGGAGGAGGAGAAGGAA
GGGGGTGCATTTATGATGGTGGGAGGGGAAGGAAATGAGGAGGGACATGT
TGCCTTGGCAGTGCGGGGACAGAGGGGAGATGCGGGAGAACGAGAAGAAG
GAAGGCCGGACGATGCGTCGGAGGAGGGGGAAGAGGGAGGACAGGAGGAA
GGCCCTGGCTTCGGCAGACGCCGAGGCTACCAGCGGTTGAGGAACGACGA
ACGCTTTTAA back to topprotein sequence of NO02G04200.2 >NO02G04200.2-protein ID=NO02G04200.2-protein|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp
MEFEQALYRVYDRSLDSLLQDRPLIDDVPQSKPRHLCTVCLHTLWFLALT
MITCVIGLHANFVNDPGCLHTTMQSAFEGNRSSILPPTSHAGPSRLRWLR
GLAKNGHTEGGNDNAPAAPAAALPLPTTMPDPRNVSTWMGEDEILQIRIA
QSGLHVTEEEEEGAAWWSQAGESSSSSSRSSNNSSDSSSSTDVIFVPDYI
YTSNTPLLYLDSGFLARHEVKRINVTLDEMCVTKGPGLGFVVGAVVGDLD
TIIINQLMYTFRSDGTARNMRTNETWSWRGSSLPPVGGYRLFTLDGWVSR
LFALLRSLLALFFLSGTTAIVVRMLMTSGVALMYPFFFCLRRMGVTGLSF
RVLTRSYAWLGVPLERLRARGKPLAPFLLAHLSKMVVVYVMYEACQVFWV
ETLYGKSGGSGMAFAVFGLVMLMEYVSMLYVRSALSIRYFPRVVLFYLLA
FHLYYYLVPYGEQSDLIPTRPKSRPIFYVAFLFLYLRPKITHRFAPFLYP
SVPPLPAGFTSQLLLATALLLLHAVLYILLFLELPAFRASIISHDTPRAF
YTDTGLPSHPHSIPPSWSLFLPLTLGRRGGRGEGRGGGGRGGGGVYDEEV
PERPVGGLVLGGRLQALIVEVEEGRQERRGRQQRNEQQEQQQLAMGHTEE
EEKEGGAFMMVGGEGNEEGHVALAVRGQRGDAGEREEGRPDDASEEGEEG
GQEEGPGFGRRRGYQRLRNDERF* back to topmRNA from alignment at chr2:1146453..1149172+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04200.2 ID=NO02G04200.2|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=mRNA|length=2720bp|location=Sequence derived from alignment at chr2:1146453..1149172+ (Nannochloropsis oceanica)
ACAGACACTAACACAGCGGGAAGTACAATCGTGGCTTGCTGGGTACTGGG
TGTCGTGTTGTCGTGAAAGCAGCAGGGAGAAGAGGTAGGGGCAGCAGCAG
GACGGGACACTCCAGGCAGCCACAGGCAAGCCGAGAGACAGGCCAGACAA
CCTGCGTGTAGGGACGCCTACTCCACAATTTTGCTTCCATGGAGTTTGAG
CAGGTGCGTTTCACGGCTGCCAGTCACAGCACAAGCTCGTCAGCCCGTCG
GTCTCTCTCCCCTCCTTCCCCTTGACTTGTAACCCGACCTCACCTCACCA
ACGTTTCCATCCTACTCTCCTTTCCTTACACGCAAGGCATTGTATCGTGT
GTACGATCGCTCCTTGGACAGCCTCCTGCAAGACCGCCCGCTTATCGATG
ATGTCCCTCAAAGCAAGCCTCGGCATCTCTGCACCGTCTGCCTCCACACC
CTTTGGTTCCTGGCCCTCACCATGATAACCTGTGTAATAGGCCTTCACGC
TAATTTTGTCAATGACCCCGGATGTCTCCATACGACAATGCAAAGTGCGT
TTGAAGGCAACAGGAGCAGCATTCTTCCTCCCACATCTCATGCGGGCCCG
TCACGCTTGCGCTGGCTGCGTGGACTGGCAAAGAATGGCCACACAGAGGG
CGGAAATGACAATGCTCCAGCTGCTCCAGCTGCGGCCCTTCCTCTCCCAA
CAACAATGCCAGACCCGAGAAATGTTTCAACCTGGATGGGAGAAGACGAG
ATTTTGCAAATAAGAATAGCGCAGTCCGGGTTACATGTTACGGAGGAGGA
GGAGGAAGGAGCGGCATGGTGGAGCCAAGCTGGGGAGAGCAGCAGCAGCA
GCAGCCGCAGCAGCAACAACAGTAGTGACAGTAGTTCTAGTACAGACGTG
ATTTTTGTGCCTGATTACATTTATACGAGCAACACCCCCTTGCTTTACCT
TGACTCGGGTTTCCTGGCCCGTCATGAGGTGAAACGAATCAACGTCACGC
TGGACGAGATGTGTGTCACAAAGGGCCCGGGGCTCGGGTTCGTGGTGGGG
GCGGTCGTGGGGGATTTGGATACAATAATCATAAATCAGCTGATGTATAC
CTTTCGAAGCGATGGGACGGCTAGAAACATGCGTACGAATGAGACCTGGA
GTTGGCGGGGCTCCTCTTTGCCACCTGTTGGGGGGTACCGCCTTTTCACC
CTAGACGGGTGGGTGTCTCGACTATTTGCGTTGCTGAGGTCCTTGTTGGC
ATTATTCTTCCTGTCAGGGACCACGGCGATTGTCGTGAGGATGCTTATGA
CGAGTGGAGTGGCGTTGATGTACCCCTTCTTTTTTTGTTTGAGGCGGATG
GGTGTCACAGGATTAAGTTTTCGGGTCTTAACGCGGAGCTACGCTTGGTT
GGGCGTTCCTTTGGAGAGGCTGCGGGCGAGGGGAAAGCCATTGGCGCCTT
TCTTACTGGCGCACTTGTCGAAGATGGTTGTGGTGTACGTGATGTACGAG
GCCTGTCAAGTGTTTTGGGTGGAGACGTTGTATGGCAAAAGTGGGGGGAG
CGGGATGGCCTTTGCCGTGTTTGGGCTGGTGATGTTGATGGAGTATGTGT
CGATGCTCTATGTCAGAAGTGGTAGGTAGGAAAGAAATGGCGGGGGGAGG
GGGAGGAAAGTTGGGGCTTGGAGGGTCTTATTTCAGGAGTCGTGAATAAA
GAAGGAGGAAGGGATGAGGGGAGGGAAGGAGGGTGGGAGGAGGTGAGGGG
TTTCTCGTGTGAGACGAACGGCGACTCTGAAAGGGGTTCTTGTGCTCCAT
GTTCTCACATAGCTCCTGTCCTGCATTCAATCCACTTCACTCACACAGCA
TTAAGCATCAGGTACTTCCCCCGCGTGGTCCTCTTCTACCTCCTTGCCTT
CCACTTGTACTACTACCTTGTCCCATACGGTGAGCAATCCGATTTAATAC
CTACCCGCCCAAAGTCTCGTCCCATTTTCTATGTCGCCTTTCTGTTTTTA
TATTTGAGGCCGAAAATCACCCATCGATTTGCTCCCTTTCTCTACCCCTC
TGTCCCTCCCTTACCCGCAGGTTTCACCTCCCAGCTCCTGCTTGCTACCG
CGCTCCTTCTCCTCCATGCCGTCCTCTACATTTTACTATTTCTCGAGCTG
CCCGCCTTTCGCGCCTCCATCATCTCCCACGACACCCCTCGGGCTTTCTA
CACTGACACCGGCCTCCCCTCCCACCCTCACTCCATCCCTCCTTCCTGGT
CCTTGTTTTTGCCACTTACCTTGGGAAGACGCGGAGGAAGGGGAGAAGGG
AGGGGAGGAGGGGGGCGAGGAGGAGGGGGAGTATATGACGAGGAGGTGCC
TGAGAGACCGGTGGGAGGGCTAGTGTTGGGGGGAAGGCTGCAGGCGTTGA
TTGTAGAAGTGGAGGAGGGGAGGCAGGAGAGGAGGGGGAGGCAACAGCGC
AATGAGCAGCAGGAGCAGCAGCAGCTAGCAATGGGGCATACGGAGGAGGA
GGAGAAGGAAGGGGGTGCATTTATGATGGTGGGAGGGGAAGGAAATGAGG
AGGGACATGTTGCCTTGGCAGTGCGGGGACAGAGGGGAGATGCGGGAGAA
CGAGAAGAAGGAAGGCCGGACGATGCGTCGGAGGAGGGGGAAGAGGGAGG
ACAGGAGGAAGGCCCTGGCTTCGGCAGACGCCGAGGCTACCAGCGGTTGA
GGAACGACGAACGCTTTTAA back to topCoding sequence (CDS) from alignment at chr2:1146453..1149172+ >NO02G04200.2 ID=NO02G04200.2|Name=NO02G04200.2|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at chr2:1146453..1149172+ (Nannochloropsis oceanica)
ATGGAGTTTGAGCAGGCATTGTATCGTGTGTACGATCGCTCCTTGGACAG
CCTCCTGCAAGACCGCCCGCTTATCGATGATGTCCCTCAAAGCAAGCCTC
GGCATCTCTGCACCGTCTGCCTCCACACCCTTTGGTTCCTGGCCCTCACC
ATGATAACCTGTGTAATAGGCCTTCACGCTAATTTTGTCAATGACCCCGG
ATGTCTCCATACGACAATGCAAAGTGCGTTTGAAGGCAACAGGAGCAGCA
TTCTTCCTCCCACATCTCATGCGGGCCCGTCACGCTTGCGCTGGCTGCGT
GGACTGGCAAAGAATGGCCACACAGAGGGCGGAAATGACAATGCTCCAGC
TGCTCCAGCTGCGGCCCTTCCTCTCCCAACAACAATGCCAGACCCGAGAA
ATGTTTCAACCTGGATGGGAGAAGACGAGATTTTGCAAATAAGAATAGCG
CAGTCCGGGTTACATGTTACGGAGGAGGAGGAGGAAGGAGCGGCATGGTG
GAGCCAAGCTGGGGAGAGCAGCAGCAGCAGCAGCCGCAGCAGCAACAACA
GTAGTGACAGTAGTTCTAGTACAGACGTGATTTTTGTGCCTGATTACATT
TATACGAGCAACACCCCCTTGCTTTACCTTGACTCGGGTTTCCTGGCCCG
TCATGAGGTGAAACGAATCAACGTCACGCTGGACGAGATGTGTGTCACAA
AGGGCCCGGGGCTCGGGTTCGTGGTGGGGGCGGTCGTGGGGGATTTGGAT
ACAATAATCATAAATCAGCTGATGTATACCTTTCGAAGCGATGGGACGGC
TAGAAACATGCGTACGAATGAGACCTGGAGTTGGCGGGGCTCCTCTTTGC
CACCTGTTGGGGGGTACCGCCTTTTCACCCTAGACGGGTGGGTGTCTCGA
CTATTTGCGTTGCTGAGGTCCTTGTTGGCATTATTCTTCCTGTCAGGGAC
CACGGCGATTGTCGTGAGGATGCTTATGACGAGTGGAGTGGCGTTGATGT
ACCCCTTCTTTTTTTGTTTGAGGCGGATGGGTGTCACAGGATTAAGTTTT
CGGGTCTTAACGCGGAGCTACGCTTGGTTGGGCGTTCCTTTGGAGAGGCT
GCGGGCGAGGGGAAAGCCATTGGCGCCTTTCTTACTGGCGCACTTGTCGA
AGATGGTTGTGGTGTACGTGATGTACGAGGCCTGTCAAGTGTTTTGGGTG
GAGACGTTGTATGGCAAAAGTGGGGGGAGCGGGATGGCCTTTGCCGTGTT
TGGGCTGGTGATGTTGATGGAGTATGTGTCGATGCTCTATGTCAGAAGTG
CATTAAGCATCAGGTACTTCCCCCGCGTGGTCCTCTTCTACCTCCTTGCC
TTCCACTTGTACTACTACCTTGTCCCATACGGTGAGCAATCCGATTTAAT
ACCTACCCGCCCAAAGTCTCGTCCCATTTTCTATGTCGCCTTTCTGTTTT
TATATTTGAGGCCGAAAATCACCCATCGATTTGCTCCCTTTCTCTACCCC
TCTGTCCCTCCCTTACCCGCAGGTTTCACCTCCCAGCTCCTGCTTGCTAC
CGCGCTCCTTCTCCTCCATGCCGTCCTCTACATTTTACTATTTCTCGAGC
TGCCCGCCTTTCGCGCCTCCATCATCTCCCACGACACCCCTCGGGCTTTC
TACACTGACACCGGCCTCCCCTCCCACCCTCACTCCATCCCTCCTTCCTG
GTCCTTGTTTTTGCCACTTACCTTGGGAAGACGCGGAGGAAGGGGAGAAG
GGAGGGGAGGAGGGGGGCGAGGAGGAGGGGGAGTATATGACGAGGAGGTG
CCTGAGAGACCGGTGGGAGGGCTAGTGTTGGGGGGAAGGCTGCAGGCGTT
GATTGTAGAAGTGGAGGAGGGGAGGCAGGAGAGGAGGGGGAGGCAACAGC
GCAATGAGCAGCAGGAGCAGCAGCAGCTAGCAATGGGGCATACGGAGGAG
GAGGAGAAGGAAGGGGGTGCATTTATGATGGTGGGAGGGGAAGGAAATGA
GGAGGGACATGTTGCCTTGGCAGTGCGGGGACAGAGGGGAGATGCGGGAG
AACGAGAAGAAGGAAGGCCGGACGATGCGTCGGAGGAGGGGGAAGAGGGA
GGACAGGAGGAAGGCCCTGGCTTCGGCAGACGCCGAGGCTACCAGCGGTT
GAGGAACGACGAACGCTTTTAA back to top
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