NO02G04150.1, NO02G04150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04150.1
Unique NameNO02G04150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1623
Alignment locationchr2:1131253..1132952 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1131253..1132952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G04150.1 vs.
Match: EWM30265.1 (mannose-6-phosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 509.6 bits (1311), Expect = 1.200e-140
Identity = 278/449 (61.92%), Postives = 318/449 (70.82%), Query Frame = 0
Query:  116 MLRLECAIQTYAWGKTGLASAVAQLKQEGENNFRADDKTRYAELWMGTHPSGPSYVVFGEDDKKVHLKDYLKAHPRALGSEPSAEGDLPFMFKVLSISKALSIQAHPDKRLAEQLHASRPQVYKDGNHKPEMAISLTDFEALCGFRPLKELAAHLVMYPELGALVGMEEQALLEKVAGEEAEEEEQRKALKAVFSSYMHASEERTTEQVAALAARLKVKEE----KGGASD-LDRLILRLLGHFPGDCGVFGPMFLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSDNVVRVGLTPKYRDVPTLLGMLSYASGPMTVTEGEVLREEAGKEHRRFNPGDGIPEFE------------------W---DGPSLLLVLEGEGVGEEFTEGMEKKVEDGKEVLMSKEKGDKVSLRKGQVFFVPANTSLVLTGKEGGAPLRLTIAHSNLRG 539
            MLRLECAIQTY WGK GL SAVAQLKQEG+++F A   TRYAELWMGTHPSGPS V+     KK+ LKDYL AHP A GS   A GDLPFMFKVLSI+KALSIQAHPDKR AE+LHA+RPQVYKD NHKPEMAISLT FEALCGFRPL EL +H   +PE  ALV  +    L  VA    +E E ++AL+ VFSSYM A EER   +++AL ARL+ K+E     G A D L+ LILRL  H+PGD GV  P+FLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSDNVVRVGLTPKYRDVPTLL ML+ ASG M VTEGEVL ++ G+EHR F+PG  IPEFE                  W   DGPSLL+VLEG G  EE   G   ++   ++  +S+     +SL KGQVF VPANT L +T       L + +AH+N  G
Sbjct:    1 MLRLECAIQTYDWGKPGLESAVAQLKQEGDDHFEAQQDTRYAELWMGTHPSGPSTVIVPAGPKKILLKDYLDAHPEATGSASVAGGDLPFMFKVLSIAKALSIQAHPDKRRAEELHATRPQVYKDANHKPEMAISLTPFEALCGFRPLAELLSHFSSFPEFKALVDSDLVNALAMVAEGSGKEVEAKEALRKVFSSYMEAPEERAMAELSALVARLERKQEIERDAGEAHDPLESLILRLKAHYPGDRGVLCPLFLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSDNVVRVGLTPKYRDVPTLLEMLTCASGAMAVTEGEVLAKQEGQEHRLFSPGASIPEFEVETIKLEKTTGGCSAPFAWKGVDGPSLLVVLEGAGEAEE-VRGSTARLSARRKTELSER---ALSLHKGQVFLVPANTGLAMTSSRTSQRLYVALAHANFHG 445          
The following BLAST results are available for this feature:
BLAST of NO02G04150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30265.11.200e-14061.92mannose-6-phosphate isomerase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04150NO02G04150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04150.1NO02G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04150.1.cds1NO02G04150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04150.1.cds2NO02G04150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04150.1 ID=NO02G04150.1|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ATGCGTTATTACACGCGACGTCGTCCAAAGCTGCTTTTGACGCCCATCCC
ACATCATCATCTCCCATCCACTGCCCACTCACAGTATAACCCGCACGCAA
TTTGTCAGTTGTCCTCACCGCCGCAGTCAAGGCCCAGTACCATTCCACAC
ACGGCATCAAAGAGGACCGCCACCCCCGTAGTTGGAGGCCCGCCCTCCAG
CCAACCCAAGTCAAAGCTGGCGTCTCTAGGGAGAATAGGTGAGGAAGCAA
CGCTGTCCCCCAACAAGACAGAAAAAGGCCTTCGGCACGAGCAGAAGCAG
GAGCAGCAACAAGAAGAAGAGGAGTCGGTTCGCGGTCTCCCGCCCATGCT
CCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGGATTGG
CCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCCGGGCA
GATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCGTCGGG
ACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTTGAAAG
ACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCGCCGAG
GGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCGTTGTC
TATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGCGAGTC
GACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCATTTCA
CTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAGCTGGC
TGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGATGGAAG
AACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGGAAGAG
CAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCGTCAGA
AGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAAAGTAA
AGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGCGGTTA
TTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTTTTAAA
TTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAATGAAC
CGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTTCGGAC
AACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCTACGCT
CCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGAAGGCG
AGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATCCTGGG
GACGGCATTCCGGAATTTGAGTGGGATGGGCCCTCGTTGTTGTTGGTGTT
GGAGGGGGAGGGGGTGGGGGAGGAGTTTACGGAGGGGATGGAGAAGAAGG
TAGAGGACGGGAAGGAGGTCCTAATGTCGAAAGAGAAGGGTGATAAAGTC
TCGTTGAGGAAGGGGCAGGTGTTTTTCGTACCGGCGAATACGAGTTTAGT
GTTGACTGGAAAGGAAGGAGGGGCCCCTTTACGACTGACGATTGCCCATT
CAAATCTCAGGGGGCGTCGTTAG
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protein sequence of NO02G04150.1

>NO02G04150.1-protein ID=NO02G04150.1-protein|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MRYYTRRRPKLLLTPIPHHHLPSTAHSQYNPHAICQLSSPPQSRPSTIPH
TASKRTATPVVGGPPSSQPKSKLASLGRIGEEATLSPNKTEKGLRHEQKQ
EQQQEEEESVRGLPPMLRLECAIQTYAWGKTGLASAVAQLKQEGENNFRA
DDKTRYAELWMGTHPSGPSYVVFGEDDKKVHLKDYLKAHPRALGSEPSAE
GDLPFMFKVLSISKALSIQAHPDKRLAEQLHASRPQVYKDGNHKPEMAIS
LTDFEALCGFRPLKELAAHLVMYPELGALVGMEEQALLEKVAGEEAEEEE
QRKALKAVFSSYMHASEERTTEQVAALAARLKVKEEKGGASDLDRLILRL
LGHFPGDCGVFGPMFLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSD
NVVRVGLTPKYRDVPTLLGMLSYASGPMTVTEGEVLREEAGKEHRRFNPG
DGIPEFEWDGPSLLLVLEGEGVGEEFTEGMEKKVEDGKEVLMSKEKGDKV
SLRKGQVFFVPANTSLVLTGKEGGAPLRLTIAHSNLRGRR*
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mRNA from alignment at chr2:1131253..1132952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04150.1 ID=NO02G04150.1|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at chr2:1131253..1132952- (Nannochloropsis oceanica)
ATGCGTTATTACACGCGACGTCGTCCAAAGCTGCTTTTGACGCCCATCCC ACATCATCATCTCCCATCCACTGCCCACTCACAGTATAACCCGCACGCAA TTTGTCAGTTGTCCTCACCGCCGCAGTCAAGGCCCAGTACCATTCCACAC ACGGCATCAAAGAGGACCGCCACCCCCGTAGTTGGAGGCCCGCCCTCCAG CCAACCCAAGTCAAAGCTGGCGTCTCTAGGGAGAATAGGTGAGGAAGCAA CGCTGTCCCCCAACAAGACAGAAAAAGGCCTTCGGCACGAGCAGAAGCAG GAGCAGCAACAAGAAGAAGAGGAGTCGGTTCGCGGTCTCCCGCCCATGCT CCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGGATTGG CCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCCGGGCA GATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCGTCGGG ACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTTGAAAG ACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCGCCGAG GGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCGTTGTC TATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGCGAGTC GACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCATTTCA CTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAGCTGGC TGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGATGGAAG AACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGGAAGAG CAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCGTCAGA AGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAAAGTAA AGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGCGGTTA TTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTTTTAAA TTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAATGAAC CGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTTCGGAC AACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCTACGCT CCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGAAGGCG AGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATCCTGGG GACGGCATTCCGGAATTTGAGGTGGAAACAATAAAGTTGGAAGGAGGGGG GGGGCAGGGGAGGGAGGGGATGGGGGAGGGTCGTTTACGTGGGAAAAGTG GGATGGGCCCTCGTTGTTGTTGGTGTTGGAGGGGGAGGGGGTGGGGGAGG AGTTTACGGAGGGGATGGAGAAGAAGGTAGAGGACGGGAAGGAGGTCCTA ATGTCGAAAGAGAAGGGTGATAAAGTCTCGTTGAGGAAGGGGCAGGTGTT TTTCGTACCGGCGAATACGAGTTTAGTGTTGACTGGAAAGGAAGGAGGGG CCCCTTTACGACTGACGATTGCCCATTCAAATCTCAGGGGGCGTCGTTAG
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Coding sequence (CDS) from alignment at chr2:1131253..1132952-

>NO02G04150.1 ID=NO02G04150.1|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr2:1131253..1132952- (Nannochloropsis oceanica)
ATGCGTTATTACACGCGACGTCGTCCAAAGCTGCTTTTGACGCCCATCCC
ACATCATCATCTCCCATCCACTGCCCACTCACAGTATAACCCGCACGCAA
TTTGTCAGTTGTCCTCACCGCCGCAGTCAAGGCCCAGTACCATTCCACAC
ACGGCATCAAAGAGGACCGCCACCCCCGTAGTTGGAGGCCCGCCCTCCAG
CCAACCCAAGTCAAAGCTGGCGTCTCTAGGGAGAATAGGTGAGGAAGCAA
CGCTGTCCCCCAACAAGACAGAAAAAGGCCTTCGGCACGAGCAGAAGCAG
GAGCAGCAACAAGAAGAAGAGGAGTCGGTTCGCGGTCTCCCGCCCATGCT
CCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGGATTGG
CCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCCGGGCA
GATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCGTCGGG
ACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTTGAAAG
ACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCGCCGAG
GGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCGTTGTC
TATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGCGAGTC
GACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCATTTCA
CTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAGCTGGC
TGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGATGGAAG
AACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGGAAGAG
CAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCGTCAGA
AGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAAAGTAA
AGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGCGGTTA
TTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTTTTAAA
TTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAATGAAC
CGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTTCGGAC
AACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCTACGCT
CCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGAAGGCG
AGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATCCTGGG
GACGGCATTCCGGAATTTGAGTGGGATGGGCCCTCGTTGTTGTTGGTGTT
GGAGGGGGAGGGGGTGGGGGAGGAGTTTACGGAGGGGATGGAGAAGAAGG
TAGAGGACGGGAAGGAGGTCCTAATGTCGAAAGAGAAGGGTGATAAAGTC
TCGTTGAGGAAGGGGCAGGTGTTTTTCGTACCGGCGAATACGAGTTTAGT
GTTGACTGGAAAGGAAGGAGGGGCCCCTTTACGACTGACGATTGCCCATT
CAAATCTCAGGGGGCGTCGTTAG
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Synonyms
Publications