|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1131253..1132952 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04150.1 vs.
Match: EWM30265.1 (mannose-6-phosphate isomerase [Nannochloropsis gaditana]) HSP 1 Score: 509.6 bits (1311), Expect = 1.200e-140 Identity = 278/449 (61.92%), Postives = 318/449 (70.82%), Query Frame = 0
Query: 116 MLRLECAIQTYAWGKTGLASAVAQLKQEGENNFRADDKTRYAELWMGTHPSGPSYVVFGEDDKKVHLKDYLKAHPRALGSEPSAEGDLPFMFKVLSISKALSIQAHPDKRLAEQLHASRPQVYKDGNHKPEMAISLTDFEALCGFRPLKELAAHLVMYPELGALVGMEEQALLEKVAGEEAEEEEQRKALKAVFSSYMHASEERTTEQVAALAARLKVKEE----KGGASD-LDRLILRLLGHFPGDCGVFGPMFLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSDNVVRVGLTPKYRDVPTLLGMLSYASGPMTVTEGEVLREEAGKEHRRFNPGDGIPEFE------------------W---DGPSLLLVLEGEGVGEEFTEGMEKKVEDGKEVLMSKEKGDKVSLRKGQVFFVPANTSLVLTGKEGGAPLRLTIAHSNLRG 539
MLRLECAIQTY WGK GL SAVAQLKQEG+++F A TRYAELWMGTHPSGPS V+ KK+ LKDYL AHP A GS A GDLPFMFKVLSI+KALSIQAHPDKR AE+LHA+RPQVYKD NHKPEMAISLT FEALCGFRPL EL +H +PE ALV + L VA +E E ++AL+ VFSSYM A EER +++AL ARL+ K+E G A D L+ LILRL H+PGD GV P+FLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSDNVVRVGLTPKYRDVPTLL ML+ ASG M VTEGEVL ++ G+EHR F+PG IPEFE W DGPSLL+VLEG G EE G ++ ++ +S+ +SL KGQVF VPANT L +T L + +AH+N G
Sbjct: 1 MLRLECAIQTYDWGKPGLESAVAQLKQEGDDHFEAQQDTRYAELWMGTHPSGPSTVIVPAGPKKILLKDYLDAHPEATGSASVAGGDLPFMFKVLSIAKALSIQAHPDKRRAEELHATRPQVYKDANHKPEMAISLTPFEALCGFRPLAELLSHFSSFPEFKALVDSDLVNALAMVAEGSGKEVEAKEALRKVFSSYMEAPEERAMAELSALVARLERKQEIERDAGEAHDPLESLILRLKAHYPGDRGVLCPLFLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSDNVVRVGLTPKYRDVPTLLEMLTCASGAMAVTEGEVLAKQEGQEHRLFSPGASIPEFEVETIKLEKTTGGCSAPFAWKGVDGPSLLVVLEGAGEAEE-VRGSTARLSARRKTELSER---ALSLHKGQVFLVPANTGLAMTSSRTSQRLYVALAHANFHG 445
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04150.1 ID=NO02G04150.1|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp ATGCGTTATTACACGCGACGTCGTCCAAAGCTGCTTTTGACGCCCATCCC ACATCATCATCTCCCATCCACTGCCCACTCACAGTATAACCCGCACGCAA TTTGTCAGTTGTCCTCACCGCCGCAGTCAAGGCCCAGTACCATTCCACAC ACGGCATCAAAGAGGACCGCCACCCCCGTAGTTGGAGGCCCGCCCTCCAG CCAACCCAAGTCAAAGCTGGCGTCTCTAGGGAGAATAGGTGAGGAAGCAA CGCTGTCCCCCAACAAGACAGAAAAAGGCCTTCGGCACGAGCAGAAGCAG GAGCAGCAACAAGAAGAAGAGGAGTCGGTTCGCGGTCTCCCGCCCATGCT CCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGGATTGG CCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCCGGGCA GATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCGTCGGG ACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTTGAAAG ACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCGCCGAG GGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCGTTGTC TATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGCGAGTC GACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCATTTCA CTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAGCTGGC TGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGATGGAAG AACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGGAAGAG CAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCGTCAGA AGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAAAGTAA AGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGCGGTTA TTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTTTTAAA TTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAATGAAC CGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTTCGGAC AACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCTACGCT CCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGAAGGCG AGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATCCTGGG GACGGCATTCCGGAATTTGAGTGGGATGGGCCCTCGTTGTTGTTGGTGTT GGAGGGGGAGGGGGTGGGGGAGGAGTTTACGGAGGGGATGGAGAAGAAGG TAGAGGACGGGAAGGAGGTCCTAATGTCGAAAGAGAAGGGTGATAAAGTC TCGTTGAGGAAGGGGCAGGTGTTTTTCGTACCGGCGAATACGAGTTTAGT GTTGACTGGAAAGGAAGGAGGGGCCCCTTTACGACTGACGATTGCCCATT CAAATCTCAGGGGGCGTCGTTAG back to topprotein sequence of NO02G04150.1 >NO02G04150.1-protein ID=NO02G04150.1-protein|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp MRYYTRRRPKLLLTPIPHHHLPSTAHSQYNPHAICQLSSPPQSRPSTIPH TASKRTATPVVGGPPSSQPKSKLASLGRIGEEATLSPNKTEKGLRHEQKQ EQQQEEEESVRGLPPMLRLECAIQTYAWGKTGLASAVAQLKQEGENNFRA DDKTRYAELWMGTHPSGPSYVVFGEDDKKVHLKDYLKAHPRALGSEPSAE GDLPFMFKVLSISKALSIQAHPDKRLAEQLHASRPQVYKDGNHKPEMAIS LTDFEALCGFRPLKELAAHLVMYPELGALVGMEEQALLEKVAGEEAEEEE QRKALKAVFSSYMHASEERTTEQVAALAARLKVKEEKGGASDLDRLILRL LGHFPGDCGVFGPMFLNYVRLGPGKAFVMEANEPHAYLSGDILECMACSD NVVRVGLTPKYRDVPTLLGMLSYASGPMTVTEGEVLREEAGKEHRRFNPG DGIPEFEWDGPSLLLVLEGEGVGEEFTEGMEKKVEDGKEVLMSKEKGDKV SLRKGQVFFVPANTSLVLTGKEGGAPLRLTIAHSNLRGRR* back to topmRNA from alignment at chr2:1131253..1132952- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04150.1 ID=NO02G04150.1|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at chr2:1131253..1132952- (Nannochloropsis oceanica) ATGCGTTATTACACGCGACGTCGTCCAAAGCTGCTTTTGACGCCCATCCC
ACATCATCATCTCCCATCCACTGCCCACTCACAGTATAACCCGCACGCAA
TTTGTCAGTTGTCCTCACCGCCGCAGTCAAGGCCCAGTACCATTCCACAC
ACGGCATCAAAGAGGACCGCCACCCCCGTAGTTGGAGGCCCGCCCTCCAG
CCAACCCAAGTCAAAGCTGGCGTCTCTAGGGAGAATAGGTGAGGAAGCAA
CGCTGTCCCCCAACAAGACAGAAAAAGGCCTTCGGCACGAGCAGAAGCAG
GAGCAGCAACAAGAAGAAGAGGAGTCGGTTCGCGGTCTCCCGCCCATGCT
CCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGGATTGG
CCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCCGGGCA
GATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCGTCGGG
ACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTTGAAAG
ACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCGCCGAG
GGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCGTTGTC
TATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGCGAGTC
GACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCATTTCA
CTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAGCTGGC
TGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGATGGAAG
AACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGGAAGAG
CAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCGTCAGA
AGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAAAGTAA
AGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGCGGTTA
TTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTTTTAAA
TTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAATGAAC
CGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTTCGGAC
AACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCTACGCT
CCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGAAGGCG
AGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATCCTGGG
GACGGCATTCCGGAATTTGAGGTGGAAACAATAAAGTTGGAAGGAGGGGG
GGGGCAGGGGAGGGAGGGGATGGGGGAGGGTCGTTTACGTGGGAAAAGTG
GGATGGGCCCTCGTTGTTGTTGGTGTTGGAGGGGGAGGGGGTGGGGGAGG
AGTTTACGGAGGGGATGGAGAAGAAGGTAGAGGACGGGAAGGAGGTCCTA
ATGTCGAAAGAGAAGGGTGATAAAGTCTCGTTGAGGAAGGGGCAGGTGTT
TTTCGTACCGGCGAATACGAGTTTAGTGTTGACTGGAAAGGAAGGAGGGG
CCCCTTTACGACTGACGATTGCCCATTCAAATCTCAGGGGGCGTCGTTAG
back to topCoding sequence (CDS) from alignment at chr2:1131253..1132952- >NO02G04150.1 ID=NO02G04150.1|Name=NO02G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr2:1131253..1132952- (Nannochloropsis oceanica) ATGCGTTATTACACGCGACGTCGTCCAAAGCTGCTTTTGACGCCCATCCC ACATCATCATCTCCCATCCACTGCCCACTCACAGTATAACCCGCACGCAA TTTGTCAGTTGTCCTCACCGCCGCAGTCAAGGCCCAGTACCATTCCACAC ACGGCATCAAAGAGGACCGCCACCCCCGTAGTTGGAGGCCCGCCCTCCAG CCAACCCAAGTCAAAGCTGGCGTCTCTAGGGAGAATAGGTGAGGAAGCAA CGCTGTCCCCCAACAAGACAGAAAAAGGCCTTCGGCACGAGCAGAAGCAG GAGCAGCAACAAGAAGAAGAGGAGTCGGTTCGCGGTCTCCCGCCCATGCT CCGTCTCGAATGCGCGATTCAGACATATGCGTGGGGCAAAACGGGATTGG CCAGCGCGGTGGCTCAGCTCAAACAAGAAGGGGAAAACAATTTCCGGGCA GATGACAAAACGCGGTACGCGGAACTGTGGATGGGCACGCACCCGTCGGG ACCGTCGTACGTGGTGTTTGGGGAGGATGATAAAAAAGTGCATTTGAAAG ACTACCTTAAGGCCCATCCCCGAGCCTTGGGCAGCGAGCCCTCCGCCGAG GGGGATCTGCCGTTTATGTTCAAGGTCCTATCGATTTCCAAGGCGTTGTC TATTCAAGCACACCCGGACAAGAGGCTAGCTGAACAGTTGCATGCGAGTC GACCGCAGGTGTATAAGGACGGGAATCATAAACCGGAAATGGCCATTTCA CTGACAGATTTCGAGGCCCTATGTGGATTTCGTCCCTTGAAAGAGCTGGC TGCGCATCTTGTGATGTACCCTGAGCTTGGGGCTTTGGTAGGGATGGAAG AACAGGCGCTGCTTGAAAAGGTGGCGGGGGAGGAGGCGGAAGAGGAAGAG CAGAGGAAGGCGTTGAAAGCGGTGTTTTCCTCATATATGCACGCGTCAGA AGAACGGACGACGGAGCAGGTGGCGGCATTGGCGGCACGGTTGAAAGTAA AGGAGGAGAAGGGAGGGGCGAGTGACTTGGATAGGCTGATTTTGCGGTTA TTGGGCCACTTTCCGGGGGACTGCGGGGTCTTCGGTCCGATGTTTTTAAA TTATGTGAGGCTGGGACCGGGGAAAGCATTTGTAATGGAGGCAAATGAAC CGCACGCGTATCTGAGTGGGGATATATTGGAGTGTATGGCGTGTTCGGAC AACGTGGTTCGGGTAGGGTTGACACCCAAATATCGCGATGTCCCTACGCT CCTTGGGATGTTGTCGTACGCCTCGGGACCCATGACAGTGACGGAAGGCG AGGTCCTGAGGGAGGAAGCAGGCAAGGAGCATAGGCGCTTCAATCCTGGG GACGGCATTCCGGAATTTGAGTGGGATGGGCCCTCGTTGTTGTTGGTGTT GGAGGGGGAGGGGGTGGGGGAGGAGTTTACGGAGGGGATGGAGAAGAAGG TAGAGGACGGGAAGGAGGTCCTAATGTCGAAAGAGAAGGGTGATAAAGTC TCGTTGAGGAAGGGGCAGGTGTTTTTCGTACCGGCGAATACGAGTTTAGT GTTGACTGGAAAGGAAGGAGGGGCCCCTTTACGACTGACGATTGCCCATT CAAATCTCAGGGGGCGTCGTTAG back to top
|