NO02G04140.1, NO02G04140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04140.1
Unique NameNO02G04140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1639
Alignment locationchr2:1128647..1130387 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1128647..1130387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G04140.1 vs.
Match: EWM30320.1 (trimethylguanosine synthase [Nannochloropsis gaditana])

HSP 1 Score: 463.8 bits (1192), Expect = 7.200e-127
Identity = 266/464 (57.33%), Postives = 310/464 (66.81%), Query Frame = 0
Query:   29 EEGEQQPRQEASPEPEETEAQQRERLKADIRAHNVNMSFTKIYLDDKALLRGFRVRPWVVQMLIYLVDHVVDQCEKGQSNGEGEAVRNKDGHEVEVRGEKDDNDDDDELDAAVRAEAAEMARAMQAMGWEAPLSFGGGDGSPGSKGKGRRKRQRNAFTGATASSHKNKHIRFGDHWEGTAATATLYPYSSSSPFFPADGKDEAPTASFPLPPFPFPSSSVPAAPPHAPPPQKYWMQRFRFFSQFDLGCRLDEEGWFSITPERIAHHIAERSRCNVVVDLFVGCGGNAIQFALASHYVLAIDLDPTKLALARHNARIYGVADRIEFILGDALTLLPRFGPLANILFLSPPWGGPEYTSAPTYSLDQIQLKGGVGGKEMMRRVLGVCPNVCVLLPRNVHLRELAEVAGGRKCEVEENILNYKLKTITVYYGEWFLPAPMSDWTAKKQWLRLQHPGRGGGRRGEKKR 493
            EE EQ+P    S +  E  A + ERLKADI AHNVNMSFTKIYLDDK LLRGFRVR WV  +L  +VD VV   E  QS   G   R +D     V GE D ++ DD+L AAVR E AEMA  ++ MGWEAPL+FG    S       RRK ++ +    + S    +                             +G+D A   +       F            PPP KYWMQRFRFFSQFDLGCRLD+EGWFSITPERIA HIAER+R ++VVDLFVGCGGNAIQFAL+SHYVLAID+DP KLA+ARHNAR+YGV DRIEFILGDALTLLPR G +A++LFLSPPWGGPEY ++PTYSL QI+L+GGV G E+  RVL   PNV  LLPRN+ LRELAE AGGR CEVEENILNYKLKT+TVY+G +F PAP+SDW+ KKQ  R  H  +GG +R  KKR
Sbjct:   24 EEDEQEP---VSQKEVELRAIELERLKADICAHNVNMSFTKIYLDDKELLRGFRVRVWVNSLLAQIVDKVVQSRESPQS---GANERKRDARAERV-GE-DVHESDDQLQAAVREETAEMALTLETMGWEAPLAFG----STAKMRMNRRKSKKRSRVDLSGSEENGR----------------------------VEGRDGAVGGALSNTHVRFDEDGRRITTDERPPP-KYWMQRFRFFSQFDLGCRLDDEGWFSITPERIARHIAERARSDLVVDLFVGCGGNAIQFALSSHYVLAIDIDPHKLAIARHNARVYGVDDRIEFILGDALTLLPRLGTVADVLFLSPPWGGPEYLASPTYSLKQIRLEGGVSGHELFERVLSASPNVAALLPRNMDLRELAEAAGGRPCEVEENILNYKLKTLTVYFGHYFFPAPLSDWSLKKQKQRGGHGSKGGKKR--KKR 444          
The following BLAST results are available for this feature:
BLAST of NO02G04140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30320.17.200e-12757.33trimethylguanosine synthase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04140NO02G04140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04140.1NO02G04140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04140.1.cds1NO02G04140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04140.1.cds2NO02G04140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04140.1 ID=NO02G04140.1|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1639bp
ACAGACCCACTGAGCCATGAAATCACTAGCTGATGAGGGCACTAACAGTT
GTGAAGAGGTGGTGACAGCGCCCATCAAAACCAATGCAGGGAGGGAGGAG
GAGGAAGGGGAGCAGCAGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGA
GACGGAGGCACAGCAACGGGAACGGCTCAAGGCCGACATACGAGCACACA
ATGTAAATATGTCGTTCACCAAGATCTACTTGGACGACAAGGCCTTACTT
CGAGGTTTCAGAGTCCGTCCTTGGGTCGTACAAATGTTGATTTATCTTGT
GGATCATGTTGTGGATCAGTGCGAAAAGGGTCAAAGTAATGGAGAAGGAG
AAGCGGTAAGGAATAAAGATGGGCACGAAGTAGAAGTCAGAGGAGAAAAG
GATGACAACGACGATGATGATGAGCTTGACGCTGCTGTGCGGGCAGAAGC
AGCTGAAATGGCACGAGCAATGCAGGCGATGGGATGGGAGGCGCCTTTGT
CTTTCGGGGGAGGGGACGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAAGG
AAAAGACAACGAAACGCCTTCACAGGAGCAACGGCGTCGTCTCACAAGAA
CAAACACATCCGGTTCGGAGACCATTGGGAAGGCACTGCTGCTACTGCCA
CTCTATATCCTTACTCATCTTCGTCCCCTTTCTTCCCCGCCGACGGCAAG
GACGAAGCACCCACCGCTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCCTC
TTCCTCTGTTCCTGCTGCTCCTCCTCACGCTCCTCCCCCGCAAAAATATT
GGATGCAACGCTTCCGTTTTTTTAGCCAATTTGATCTTGGTTGTCGTTTG
GACGAAGAAGGGTGGTTCTCAATCACTCCCGAGAGAATTGCCCATCATAT
TGCCGAGCGTTCTCGTTGTAATGTGGTCGTTGATCTCTTTGTAGGCTGCG
GGGGCAACGCAATTCAGTTTGCCTTGGCCTCTCACTATGTACTTGCTATT
GATCTGGACCCGACTAAGCTAGCCCTGGCGAGGCACAATGCGCGTATATA
TGGAGTAGCAGATCGGATCGAATTCATCCTAGGCGATGCCCTCACCCTCC
TTCCCCGCTTTGGGCCTCTCGCGAACATCCTCTTTCTCTCTCCTCCGTGG
GGGGGTCCTGAGTACACCTCTGCCCCCACTTATTCCCTAGACCAGATTCA
GTTGAAAGGAGGGGTGGGGGGGAAGGAGATGATGAGGAGGGTGTTGGGGG
TCTGTCCAAACGTGTGTGTCTTACTACCCAGAAACGTACACTTGAGAGAA
CTGGCAGAGGTGGCGGGGGGTAGGAAATGCGAGGTGGAGGAGAATATCCT
GAATTACAAGTTGAAGACGATAACGGTTTATTACGGAGAGTGGTTCTTGC
CGGCGCCCATGTCTGATTGGACGGCCAAGAAGCAGTGGCTGCGGCTGCAA
CACCCGGGGAGGGGGGGAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGGAA
TAAAAGACAGAGGATGAAGGATAAGGCGGAGAAGGAGATGCTGGATTATG
GGGGAGAAGAAGCGGTTGATGCGATCTTGTGAGTGTAAAAGAATGAAAGA
AATCTTGTGAATACTAAGAGCAAGAGGTTGACGCTTGCA
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protein sequence of NO02G04140.1

>NO02G04140.1-protein ID=NO02G04140.1-protein|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MKSLADEGTNSCEEVVTAPIKTNAGREEEEGEQQPRQEASPEPEETEAQQ
RERLKADIRAHNVNMSFTKIYLDDKALLRGFRVRPWVVQMLIYLVDHVVD
QCEKGQSNGEGEAVRNKDGHEVEVRGEKDDNDDDDELDAAVRAEAAEMAR
AMQAMGWEAPLSFGGGDGSPGSKGKGRRKRQRNAFTGATASSHKNKHIRF
GDHWEGTAATATLYPYSSSSPFFPADGKDEAPTASFPLPPFPFPSSSVPA
APPHAPPPQKYWMQRFRFFSQFDLGCRLDEEGWFSITPERIAHHIAERSR
CNVVVDLFVGCGGNAIQFALASHYVLAIDLDPTKLALARHNARIYGVADR
IEFILGDALTLLPRFGPLANILFLSPPWGGPEYTSAPTYSLDQIQLKGGV
GGKEMMRRVLGVCPNVCVLLPRNVHLRELAEVAGGRKCEVEENILNYKLK
TITVYYGEWFLPAPMSDWTAKKQWLRLQHPGRGGGRRGEKKRKRNKRQRM
KDKAEKEMLDYGGEEAVDAIL*
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mRNA from alignment at chr2:1128647..1130387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04140.1 ID=NO02G04140.1|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp|location=Sequence derived from alignment at chr2:1128647..1130387+ (Nannochloropsis oceanica)
ACAGACCCACTGAGCCATGAAATCACTAGCTGATGAGGGCACTAACAGTT GTGAAGAGGTGGTGACAGCGCCCATCAAAACCAATGCAGGGAGGGAGGAG GAGGAAGGGGAGCAGCAGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGA GACGGAGGCACAGCAACGGGAACGGCTCAAGGCCGACATACGAGCACACA ATGTAAATATGTCGTTCACCAAGTAAGTCAATTTCTTTGTTGGCATACCG CCAACCCACAAGCTGCGTCGCATCACGCTCACTTCGCATTCTCCCCTTCC TTCCTCTCTTTCGTGCACCTGCAGGATCTACTTGGACGACAAGGCCTTAC TTCGAGGTTTCAGAGTCCGTCCTTGGGTCGTACAAATGTTGATTTATCTT GTGGATCATGTTGTGGATCAGTGCGAAAAGGGTCAAAGTAATGGAGAAGG AGAAGCGGTAAGGAATAAAGATGGGCACGAAGTAGAAGTCAGAGGAGAAA AGGATGACAACGACGATGATGATGAGCTTGACGCTGCTGTGCGGGCAGAA GCAGCTGAAATGGCACGAGCAATGCAGGCGATGGGATGGGAGGCGCCTTT GTCTTTCGGGGGAGGGGACGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAA GGAAAAGACAACGAAACGCCTTCACAGGAGCAACGGCGTCGTCTCACAAG AACAAACACATCCGGTTCGGAGACCATTGGGAAGGCACTGCTGCTACTGC CACTCTATATCCTTACTCATCTTCGTCCCCTTTCTTCCCCGCCGACGGCA AGGACGAAGCACCCACCGCTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCC TCTTCCTCTGTTCCTGCTGCTCCTCCTCACGCTCCTCCCCCGCAAAAATA TTGGATGCAACGCTTCCGTTTTTTTAGCCAATTTGATCTTGGTTGTCGTT TGGACGAAGAAGGGTGGTTCTCAATCACTCCCGAGAGAATTGCCCATCAT ATTGCCGAGCGTTCTCGTTGTAATGTGGTCGTTGATCTCTTTGTAGGCTG CGGGGGCAACGCAATTCAGTTTGCCTTGGCCTCTCACTATGTACTTGCTA TTGATCTGGACCCGACTAAGCTAGCCCTGGCGAGGCACAATGCGCGTATA TATGGAGTAGCAGATCGGATCGAATTCATCCTAGGCGATGCCCTCACCCT CCTTCCCCGCTTTGGGCCTCTCGCGAACATCCTCTTTCTCTCTCCTCCGT GGGGGGGTCCTGAGTACACCTCTGCCCCCACTTATTCCCTAGACCAGATT CAGTTGAAAGGAGGGGTGGGGGGGAAGGAGATGATGAGGAGGGTGTTGGG GGTCTGTCCAAACGTGTGTGTCTTACTACCCAGAAACGTACACTTGAGAG AACTGGCAGAGGTGGCGGGGGGTAGGAAATGCGAGGTGGAGGAGAATATC CTGAATTACAAGTTGAAGACGATAACGGTTTATTACGGAGAGTGGTTCTT GCCGGCGCCCATGTCTGATTGGACGGCCAAGAAGCAGTGGCTGCGGCTGC AACACCCGGGGAGGGGGGGAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGG AATAAAAGACAGAGGATGAAGGATAAGGCGGAGAAGGAGATGCTGGATTA TGGGGGAGAAGAAGCGGTTGATGCGATCTTGTGAGTGTAAAAGAATGAAA GAAATCTTGTGAATACTAAGAGCAAGAGGTTGACGCTTGCA
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Coding sequence (CDS) from alignment at chr2:1128647..1130387+

>NO02G04140.1 ID=NO02G04140.1|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at chr2:1128647..1130387+ (Nannochloropsis oceanica)
ATGAAATCACTAGCTGATGAGGGCACTAACAGTTGTGAAGAGGTGGTGAC
AGCGCCCATCAAAACCAATGCAGGGAGGGAGGAGGAGGAAGGGGAGCAGC
AGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGAGACGGAGGCACAGCAA
CGGGAACGGCTCAAGGCCGACATACGAGCACACAATGTAAATATGTCGTT
CACCAAGATCTACTTGGACGACAAGGCCTTACTTCGAGGTTTCAGAGTCC
GTCCTTGGGTCGTACAAATGTTGATTTATCTTGTGGATCATGTTGTGGAT
CAGTGCGAAAAGGGTCAAAGTAATGGAGAAGGAGAAGCGGTAAGGAATAA
AGATGGGCACGAAGTAGAAGTCAGAGGAGAAAAGGATGACAACGACGATG
ATGATGAGCTTGACGCTGCTGTGCGGGCAGAAGCAGCTGAAATGGCACGA
GCAATGCAGGCGATGGGATGGGAGGCGCCTTTGTCTTTCGGGGGAGGGGA
CGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAAGGAAAAGACAACGAAACG
CCTTCACAGGAGCAACGGCGTCGTCTCACAAGAACAAACACATCCGGTTC
GGAGACCATTGGGAAGGCACTGCTGCTACTGCCACTCTATATCCTTACTC
ATCTTCGTCCCCTTTCTTCCCCGCCGACGGCAAGGACGAAGCACCCACCG
CTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCCTCTTCCTCTGTTCCTGCT
GCTCCTCCTCACGCTCCTCCCCCGCAAAAATATTGGATGCAACGCTTCCG
TTTTTTTAGCCAATTTGATCTTGGTTGTCGTTTGGACGAAGAAGGGTGGT
TCTCAATCACTCCCGAGAGAATTGCCCATCATATTGCCGAGCGTTCTCGT
TGTAATGTGGTCGTTGATCTCTTTGTAGGCTGCGGGGGCAACGCAATTCA
GTTTGCCTTGGCCTCTCACTATGTACTTGCTATTGATCTGGACCCGACTA
AGCTAGCCCTGGCGAGGCACAATGCGCGTATATATGGAGTAGCAGATCGG
ATCGAATTCATCCTAGGCGATGCCCTCACCCTCCTTCCCCGCTTTGGGCC
TCTCGCGAACATCCTCTTTCTCTCTCCTCCGTGGGGGGGTCCTGAGTACA
CCTCTGCCCCCACTTATTCCCTAGACCAGATTCAGTTGAAAGGAGGGGTG
GGGGGGAAGGAGATGATGAGGAGGGTGTTGGGGGTCTGTCCAAACGTGTG
TGTCTTACTACCCAGAAACGTACACTTGAGAGAACTGGCAGAGGTGGCGG
GGGGTAGGAAATGCGAGGTGGAGGAGAATATCCTGAATTACAAGTTGAAG
ACGATAACGGTTTATTACGGAGAGTGGTTCTTGCCGGCGCCCATGTCTGA
TTGGACGGCCAAGAAGCAGTGGCTGCGGCTGCAACACCCGGGGAGGGGGG
GAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGGAATAAAAGACAGAGGATG
AAGGATAAGGCGGAGAAGGAGATGCTGGATTATGGGGGAGAAGAAGCGGT
TGATGCGATCTTGTGA
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Synonyms
Publications