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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1128647..1130387 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04140.1 vs.
Match: EWM30320.1 (trimethylguanosine synthase [Nannochloropsis gaditana]) HSP 1 Score: 463.8 bits (1192), Expect = 7.200e-127 Identity = 266/464 (57.33%), Postives = 310/464 (66.81%), Query Frame = 0
Query: 29 EEGEQQPRQEASPEPEETEAQQRERLKADIRAHNVNMSFTKIYLDDKALLRGFRVRPWVVQMLIYLVDHVVDQCEKGQSNGEGEAVRNKDGHEVEVRGEKDDNDDDDELDAAVRAEAAEMARAMQAMGWEAPLSFGGGDGSPGSKGKGRRKRQRNAFTGATASSHKNKHIRFGDHWEGTAATATLYPYSSSSPFFPADGKDEAPTASFPLPPFPFPSSSVPAAPPHAPPPQKYWMQRFRFFSQFDLGCRLDEEGWFSITPERIAHHIAERSRCNVVVDLFVGCGGNAIQFALASHYVLAIDLDPTKLALARHNARIYGVADRIEFILGDALTLLPRFGPLANILFLSPPWGGPEYTSAPTYSLDQIQLKGGVGGKEMMRRVLGVCPNVCVLLPRNVHLRELAEVAGGRKCEVEENILNYKLKTITVYYGEWFLPAPMSDWTAKKQWLRLQHPGRGGGRRGEKKR 493
EE EQ+P S + E A + ERLKADI AHNVNMSFTKIYLDDK LLRGFRVR WV +L +VD VV E QS G R +D V GE D ++ DD+L AAVR E AEMA ++ MGWEAPL+FG S RRK ++ + + S + +G+D A + F PPP KYWMQRFRFFSQFDLGCRLD+EGWFSITPERIA HIAER+R ++VVDLFVGCGGNAIQFAL+SHYVLAID+DP KLA+ARHNAR+YGV DRIEFILGDALTLLPR G +A++LFLSPPWGGPEY ++PTYSL QI+L+GGV G E+ RVL PNV LLPRN+ LRELAE AGGR CEVEENILNYKLKT+TVY+G +F PAP+SDW+ KKQ R H +GG +R KKR
Sbjct: 24 EEDEQEP---VSQKEVELRAIELERLKADICAHNVNMSFTKIYLDDKELLRGFRVRVWVNSLLAQIVDKVVQSRESPQS---GANERKRDARAERV-GE-DVHESDDQLQAAVREETAEMALTLETMGWEAPLAFG----STAKMRMNRRKSKKRSRVDLSGSEENGR----------------------------VEGRDGAVGGALSNTHVRFDEDGRRITTDERPPP-KYWMQRFRFFSQFDLGCRLDDEGWFSITPERIARHIAERARSDLVVDLFVGCGGNAIQFALSSHYVLAIDIDPHKLAIARHNARVYGVDDRIEFILGDALTLLPRLGTVADVLFLSPPWGGPEYLASPTYSLKQIRLEGGVSGHELFERVLSASPNVAALLPRNMDLRELAEAAGGRPCEVEENILNYKLKTLTVYFGHYFFPAPLSDWSLKKQKQRGGHGSKGGKKR--KKR 444
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04140.1 ID=NO02G04140.1|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1639bp ACAGACCCACTGAGCCATGAAATCACTAGCTGATGAGGGCACTAACAGTT GTGAAGAGGTGGTGACAGCGCCCATCAAAACCAATGCAGGGAGGGAGGAG GAGGAAGGGGAGCAGCAGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGA GACGGAGGCACAGCAACGGGAACGGCTCAAGGCCGACATACGAGCACACA ATGTAAATATGTCGTTCACCAAGATCTACTTGGACGACAAGGCCTTACTT CGAGGTTTCAGAGTCCGTCCTTGGGTCGTACAAATGTTGATTTATCTTGT GGATCATGTTGTGGATCAGTGCGAAAAGGGTCAAAGTAATGGAGAAGGAG AAGCGGTAAGGAATAAAGATGGGCACGAAGTAGAAGTCAGAGGAGAAAAG GATGACAACGACGATGATGATGAGCTTGACGCTGCTGTGCGGGCAGAAGC AGCTGAAATGGCACGAGCAATGCAGGCGATGGGATGGGAGGCGCCTTTGT CTTTCGGGGGAGGGGACGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAAGG AAAAGACAACGAAACGCCTTCACAGGAGCAACGGCGTCGTCTCACAAGAA CAAACACATCCGGTTCGGAGACCATTGGGAAGGCACTGCTGCTACTGCCA CTCTATATCCTTACTCATCTTCGTCCCCTTTCTTCCCCGCCGACGGCAAG GACGAAGCACCCACCGCTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCCTC TTCCTCTGTTCCTGCTGCTCCTCCTCACGCTCCTCCCCCGCAAAAATATT GGATGCAACGCTTCCGTTTTTTTAGCCAATTTGATCTTGGTTGTCGTTTG GACGAAGAAGGGTGGTTCTCAATCACTCCCGAGAGAATTGCCCATCATAT TGCCGAGCGTTCTCGTTGTAATGTGGTCGTTGATCTCTTTGTAGGCTGCG GGGGCAACGCAATTCAGTTTGCCTTGGCCTCTCACTATGTACTTGCTATT GATCTGGACCCGACTAAGCTAGCCCTGGCGAGGCACAATGCGCGTATATA TGGAGTAGCAGATCGGATCGAATTCATCCTAGGCGATGCCCTCACCCTCC TTCCCCGCTTTGGGCCTCTCGCGAACATCCTCTTTCTCTCTCCTCCGTGG GGGGGTCCTGAGTACACCTCTGCCCCCACTTATTCCCTAGACCAGATTCA GTTGAAAGGAGGGGTGGGGGGGAAGGAGATGATGAGGAGGGTGTTGGGGG TCTGTCCAAACGTGTGTGTCTTACTACCCAGAAACGTACACTTGAGAGAA CTGGCAGAGGTGGCGGGGGGTAGGAAATGCGAGGTGGAGGAGAATATCCT GAATTACAAGTTGAAGACGATAACGGTTTATTACGGAGAGTGGTTCTTGC CGGCGCCCATGTCTGATTGGACGGCCAAGAAGCAGTGGCTGCGGCTGCAA CACCCGGGGAGGGGGGGAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGGAA TAAAAGACAGAGGATGAAGGATAAGGCGGAGAAGGAGATGCTGGATTATG GGGGAGAAGAAGCGGTTGATGCGATCTTGTGAGTGTAAAAGAATGAAAGA AATCTTGTGAATACTAAGAGCAAGAGGTTGACGCTTGCA back to topprotein sequence of NO02G04140.1 >NO02G04140.1-protein ID=NO02G04140.1-protein|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp MKSLADEGTNSCEEVVTAPIKTNAGREEEEGEQQPRQEASPEPEETEAQQ RERLKADIRAHNVNMSFTKIYLDDKALLRGFRVRPWVVQMLIYLVDHVVD QCEKGQSNGEGEAVRNKDGHEVEVRGEKDDNDDDDELDAAVRAEAAEMAR AMQAMGWEAPLSFGGGDGSPGSKGKGRRKRQRNAFTGATASSHKNKHIRF GDHWEGTAATATLYPYSSSSPFFPADGKDEAPTASFPLPPFPFPSSSVPA APPHAPPPQKYWMQRFRFFSQFDLGCRLDEEGWFSITPERIAHHIAERSR CNVVVDLFVGCGGNAIQFALASHYVLAIDLDPTKLALARHNARIYGVADR IEFILGDALTLLPRFGPLANILFLSPPWGGPEYTSAPTYSLDQIQLKGGV GGKEMMRRVLGVCPNVCVLLPRNVHLRELAEVAGGRKCEVEENILNYKLK TITVYYGEWFLPAPMSDWTAKKQWLRLQHPGRGGGRRGEKKRKRNKRQRM KDKAEKEMLDYGGEEAVDAIL* back to topmRNA from alignment at chr2:1128647..1130387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04140.1 ID=NO02G04140.1|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp|location=Sequence derived from alignment at chr2:1128647..1130387+ (Nannochloropsis oceanica) ACAGACCCACTGAGCCATGAAATCACTAGCTGATGAGGGCACTAACAGTT
GTGAAGAGGTGGTGACAGCGCCCATCAAAACCAATGCAGGGAGGGAGGAG
GAGGAAGGGGAGCAGCAGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGA
GACGGAGGCACAGCAACGGGAACGGCTCAAGGCCGACATACGAGCACACA
ATGTAAATATGTCGTTCACCAAGTAAGTCAATTTCTTTGTTGGCATACCG
CCAACCCACAAGCTGCGTCGCATCACGCTCACTTCGCATTCTCCCCTTCC
TTCCTCTCTTTCGTGCACCTGCAGGATCTACTTGGACGACAAGGCCTTAC
TTCGAGGTTTCAGAGTCCGTCCTTGGGTCGTACAAATGTTGATTTATCTT
GTGGATCATGTTGTGGATCAGTGCGAAAAGGGTCAAAGTAATGGAGAAGG
AGAAGCGGTAAGGAATAAAGATGGGCACGAAGTAGAAGTCAGAGGAGAAA
AGGATGACAACGACGATGATGATGAGCTTGACGCTGCTGTGCGGGCAGAA
GCAGCTGAAATGGCACGAGCAATGCAGGCGATGGGATGGGAGGCGCCTTT
GTCTTTCGGGGGAGGGGACGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAA
GGAAAAGACAACGAAACGCCTTCACAGGAGCAACGGCGTCGTCTCACAAG
AACAAACACATCCGGTTCGGAGACCATTGGGAAGGCACTGCTGCTACTGC
CACTCTATATCCTTACTCATCTTCGTCCCCTTTCTTCCCCGCCGACGGCA
AGGACGAAGCACCCACCGCTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCC
TCTTCCTCTGTTCCTGCTGCTCCTCCTCACGCTCCTCCCCCGCAAAAATA
TTGGATGCAACGCTTCCGTTTTTTTAGCCAATTTGATCTTGGTTGTCGTT
TGGACGAAGAAGGGTGGTTCTCAATCACTCCCGAGAGAATTGCCCATCAT
ATTGCCGAGCGTTCTCGTTGTAATGTGGTCGTTGATCTCTTTGTAGGCTG
CGGGGGCAACGCAATTCAGTTTGCCTTGGCCTCTCACTATGTACTTGCTA
TTGATCTGGACCCGACTAAGCTAGCCCTGGCGAGGCACAATGCGCGTATA
TATGGAGTAGCAGATCGGATCGAATTCATCCTAGGCGATGCCCTCACCCT
CCTTCCCCGCTTTGGGCCTCTCGCGAACATCCTCTTTCTCTCTCCTCCGT
GGGGGGGTCCTGAGTACACCTCTGCCCCCACTTATTCCCTAGACCAGATT
CAGTTGAAAGGAGGGGTGGGGGGGAAGGAGATGATGAGGAGGGTGTTGGG
GGTCTGTCCAAACGTGTGTGTCTTACTACCCAGAAACGTACACTTGAGAG
AACTGGCAGAGGTGGCGGGGGGTAGGAAATGCGAGGTGGAGGAGAATATC
CTGAATTACAAGTTGAAGACGATAACGGTTTATTACGGAGAGTGGTTCTT
GCCGGCGCCCATGTCTGATTGGACGGCCAAGAAGCAGTGGCTGCGGCTGC
AACACCCGGGGAGGGGGGGAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGG
AATAAAAGACAGAGGATGAAGGATAAGGCGGAGAAGGAGATGCTGGATTA
TGGGGGAGAAGAAGCGGTTGATGCGATCTTGTGAGTGTAAAAGAATGAAA
GAAATCTTGTGAATACTAAGAGCAAGAGGTTGACGCTTGCA back to topCoding sequence (CDS) from alignment at chr2:1128647..1130387+ >NO02G04140.1 ID=NO02G04140.1|Name=NO02G04140.1|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at chr2:1128647..1130387+ (Nannochloropsis oceanica) ATGAAATCACTAGCTGATGAGGGCACTAACAGTTGTGAAGAGGTGGTGAC AGCGCCCATCAAAACCAATGCAGGGAGGGAGGAGGAGGAAGGGGAGCAGC AGCCGCGTCAGGAGGCGTCACCGGAGCCCGAGGAGACGGAGGCACAGCAA CGGGAACGGCTCAAGGCCGACATACGAGCACACAATGTAAATATGTCGTT CACCAAGATCTACTTGGACGACAAGGCCTTACTTCGAGGTTTCAGAGTCC GTCCTTGGGTCGTACAAATGTTGATTTATCTTGTGGATCATGTTGTGGAT CAGTGCGAAAAGGGTCAAAGTAATGGAGAAGGAGAAGCGGTAAGGAATAA AGATGGGCACGAAGTAGAAGTCAGAGGAGAAAAGGATGACAACGACGATG ATGATGAGCTTGACGCTGCTGTGCGGGCAGAAGCAGCTGAAATGGCACGA GCAATGCAGGCGATGGGATGGGAGGCGCCTTTGTCTTTCGGGGGAGGGGA CGGTAGCCCTGGAAGTAAAGGCAAAGGTAGAAGGAAAAGACAACGAAACG CCTTCACAGGAGCAACGGCGTCGTCTCACAAGAACAAACACATCCGGTTC GGAGACCATTGGGAAGGCACTGCTGCTACTGCCACTCTATATCCTTACTC ATCTTCGTCCCCTTTCTTCCCCGCCGACGGCAAGGACGAAGCACCCACCG CTTCCTTTCCTCTTCCTCCCTTCCCCTTCCCCTCTTCCTCTGTTCCTGCT GCTCCTCCTCACGCTCCTCCCCCGCAAAAATATTGGATGCAACGCTTCCG TTTTTTTAGCCAATTTGATCTTGGTTGTCGTTTGGACGAAGAAGGGTGGT TCTCAATCACTCCCGAGAGAATTGCCCATCATATTGCCGAGCGTTCTCGT TGTAATGTGGTCGTTGATCTCTTTGTAGGCTGCGGGGGCAACGCAATTCA GTTTGCCTTGGCCTCTCACTATGTACTTGCTATTGATCTGGACCCGACTA AGCTAGCCCTGGCGAGGCACAATGCGCGTATATATGGAGTAGCAGATCGG ATCGAATTCATCCTAGGCGATGCCCTCACCCTCCTTCCCCGCTTTGGGCC TCTCGCGAACATCCTCTTTCTCTCTCCTCCGTGGGGGGGTCCTGAGTACA CCTCTGCCCCCACTTATTCCCTAGACCAGATTCAGTTGAAAGGAGGGGTG GGGGGGAAGGAGATGATGAGGAGGGTGTTGGGGGTCTGTCCAAACGTGTG TGTCTTACTACCCAGAAACGTACACTTGAGAGAACTGGCAGAGGTGGCGG GGGGTAGGAAATGCGAGGTGGAGGAGAATATCCTGAATTACAAGTTGAAG ACGATAACGGTTTATTACGGAGAGTGGTTCTTGCCGGCGCCCATGTCTGA TTGGACGGCCAAGAAGCAGTGGCTGCGGCTGCAACACCCGGGGAGGGGGG GAGGGAGGAGAGGAGAAAAAAAAAGAAAGAGGAATAAAAGACAGAGGATG AAGGATAAGGCGGAGAAGGAGATGCTGGATTATGGGGGAGAAGAAGCGGT TGATGCGATCTTGTGA back to top
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