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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1124776..1126745 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04120.1 vs.
Match: EWM30297.1 (glutathione s-transferase [Nannochloropsis gaditana]) HSP 1 Score: 770.8 bits (1989), Expect = 2.800e-219 Identity = 383/516 (74.22%), Postives = 429/516 (83.14%), Query Frame = 0
Query: 8 LQPLLLILSCASFAVQGFV--PHPPTCSPIPTLRKSKHFTSSSLIKRESSLGGMFSQMLGGMLKGPAPPPADMEAFKDPAPSWTELQALLIEKQTVEERALPDLRAKGRGPPSSKASLRLFEAPDGHEPRVVLYRDTAAWCPYCQKVWMYLEEKRIPYQVRKVPMRCYGQKPAWFSRLSASGLLPVMELDGDIVIESDVIIQTLEDRFPDAIPLLPLASDPDAALVSPLLRLERELFSGWLRWLTGSTTTNERSKMIFEGVLGKVETALAAKGGPYFLGETFSLIDCIFAPFMERMAGTLCYYKGFEMRNNAKYVGVERWFRAMESRESFANIKSDWYTHAMDMPPQVGSCSSIPEAIPYAAELSGRDGVSWTLPLKQNGVEPLLPSFEEGAARREAVAQLLANAEAVVKFAARGLGEPGVPPVTADLADPNAKPNEAYVPLLDAALRGVAHSMLVGREGMSMPPGEGFVAGEAVAQGLDYLRARVGVPRDMSYEAARMFRGHLGWYAEELRKVCQ 522
L P IL+ S V GF P P SP T K+ + R SSLGGMF+QML GM+KG APPPA M FKDPAPSW +L+A L ++QT EERALPDLRA GRGPPSSKA +RLF+APDG+EPRV LYRDTAAWCPYC+KVWMYLEEKRIPY+V+KVPMRCYGQKPAWFSRLSA+GLLPVMELDGD+VIESDVIIQTLED+FP+A+PLLPLASDPDAA V PLLRLERELFSGWLRWLTGST+TNERSKMIFEGVLG+VE AL+ +GGPYFLG FSLIDCI+ PFMER+AG+LCYYKGF +RNN +Y +ERWF+ MESRESFANIKSDWYTHAMDMPPQVGSCSSIPEA PYAAELSG+DG SWTLP++ +GVEP + + G+ +REA AQLL+N EAVV FAAR LGEPGVPPV A+LADPNAK NEAY+PLLDAALR V HS+L G E ++PP GFVA VA+GLDYLRARVGVPRDMSYEAAR FR HLGWYA LR Q
Sbjct: 9 LLPTTFILASISTTVVGFFLSPSPTLVSPGRTTSKAWRNPLKPSLTRYSSLGGMFTQMLSGMVKGSAPPPAGMSDFKDPAPSWADLKASLSQRQTPEERALPDLRAAGRGPPSSKAEIRLFDAPDGYEPRVTLYRDTAAWCPYCEKVWMYLEEKRIPYRVKKVPMRCYGQKPAWFSRLSATGLLPVMELDGDVVIESDVIIQTLEDKFPEAVPLLPLASDPDAAAVGPLLRLERELFSGWLRWLTGSTSTNERSKMIFEGVLGRVEAALSERGGPYFLGSGFSLIDCIYVPFMERIAGSLCYYKGFVIRNNPQYPAIERWFQGMESRESFANIKSDWYTHAMDMPPQVGSCSSIPEAAPYAAELSGKDG-SWTLPVRPDGVEPFRRTRDVGSCQREAAAQLLSNPEAVVAFAARALGEPGVPPVMAELADPNAKANEAYIPLLDAALRAVTHSLLEGPE--AVPPPTGFVAPAEVARGLDYLRARVGVPRDMSYEAARYFRAHLGWYAGLLRASVQ 521
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04120.1 ID=NO02G04120.1|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp ACAGGTCTTCCTGCTGTCCTACGCGGCAATGCTTGCGCCGCCTTGCCTGC TACAGCCGTTGCTACTTATCTTGAGCTGTGCGTCATTTGCTGTTCAAGGG TTTGTGCCGCACCCGCCCACGTGTTCTCCCATCCCTACCCTACGCAAATC TAAGCACTTCACCTCGTCCTCACTGATCAAACGCGAATCCTCCCTCGGCG GCATGTTCTCGCAAATGTTGGGAGGGATGCTCAAGGGCCCGGCTCCACCT CCAGCGGACATGGAAGCATTCAAAGACCCGGCACCTAGCTGGACAGAGCT ACAGGCACTATTGATCGAGAAGCAGACTGTGGAGGAGCGGGCCTTGCCTG ATCTGCGCGCGAAGGGCCGCGGCCCCCCCTCTAGCAAGGCATCACTGCGT TTGTTTGAAGCGCCGGACGGGCACGAACCGCGCGTGGTGCTTTATAGGGA TACGGCTGCTTGGTGCCCGTATTGCCAGAAGGTGTGGATGTATTTAGAGG AAAAGCGCATTCCCTATCAAGTCAGAAAAGTACCCATGCGGTGCTACGGT CAAAAACCCGCCTGGTTTTCACGTCTGTCTGCCTCGGGTCTCTTGCCAGT CATGGAGCTCGATGGCGACATCGTCATTGAATCAGATGTGATCATCCAAA CACTCGAAGATCGCTTCCCAGACGCCATCCCCCTCCTCCCTCTCGCCTCG GACCCCGACGCAGCCTTAGTCTCGCCTTTACTCAGGCTTGAACGAGAGTT GTTCAGTGGTTGGTTGCGGTGGTTGACAGGGAGCACCACCACAAATGAGA GGAGTAAGATGATCTTCGAGGGAGTGTTAGGGAAGGTAGAAACAGCATTG GCCGCAAAGGGCGGGCCGTATTTCTTGGGCGAGACATTTTCATTGATTGA TTGCATTTTTGCCCCGTTCATGGAGAGGATGGCAGGAACCCTGTGCTATT ACAAGGGGTTTGAGATGCGCAATAATGCGAAATACGTAGGAGTGGAACGG TGGTTCCGGGCGATGGAAAGCAGGGAGAGCTTCGCGAACATCAAGAGTGA CTGGTACACTCATGCAATGGACATGCCCCCCCAGGTCGGCTCTTGCTCCT CCATCCCCGAAGCTATCCCTTATGCCGCAGAGCTCTCTGGAAGGGATGGA GTTTCCTGGACCTTGCCACTCAAACAAAACGGGGTGGAACCTCTCCTCCC CTCCTTCGAGGAAGGTGCCGCCAGGCGAGAAGCAGTGGCACAGCTGCTGG CGAATGCCGAGGCAGTTGTTAAGTTTGCTGCACGTGGCTTGGGCGAACCG GGCGTTCCCCCCGTGACGGCTGATTTGGCCGACCCGAACGCGAAACCAAA TGAAGCTTATGTGCCTTTACTTGATGCTGCTTTGCGAGGGGTGGCTCATT CAATGTTGGTAGGGAGGGAGGGCATGTCGATGCCGCCTGGGGAGGGTTTT GTGGCAGGGGAGGCAGTTGCACAGGGGTTGGATTACCTAAGGGCAAGAGT AGGGGTACCGAGGGACATGTCATATGAGGCGGCGAGAATGTTCAGGGGTC ACTTGGGCTGGTATGCGGAAGAGTTGAGGAAGGTATGTCAGGCTTAGGAG GGGTTTTTGGGAGAAATCTTTCAGTCAGGGAGGGTTTCGATTGTACGGAG CGAGGTGAATGAGTTTCCAAAAAAAGAAAATCAGGAAGGAAAGTGTGTCG CGCGAAACCCTTAGTTGCCGTAAGC back to topprotein sequence of NO02G04120.1 >NO02G04120.1-protein ID=NO02G04120.1-protein|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp MLAPPCLLQPLLLILSCASFAVQGFVPHPPTCSPIPTLRKSKHFTSSSLI KRESSLGGMFSQMLGGMLKGPAPPPADMEAFKDPAPSWTELQALLIEKQT VEERALPDLRAKGRGPPSSKASLRLFEAPDGHEPRVVLYRDTAAWCPYCQ KVWMYLEEKRIPYQVRKVPMRCYGQKPAWFSRLSASGLLPVMELDGDIVI ESDVIIQTLEDRFPDAIPLLPLASDPDAALVSPLLRLERELFSGWLRWLT GSTTTNERSKMIFEGVLGKVETALAAKGGPYFLGETFSLIDCIFAPFMER MAGTLCYYKGFEMRNNAKYVGVERWFRAMESRESFANIKSDWYTHAMDMP PQVGSCSSIPEAIPYAAELSGRDGVSWTLPLKQNGVEPLLPSFEEGAARR EAVAQLLANAEAVVKFAARGLGEPGVPPVTADLADPNAKPNEAYVPLLDA ALRGVAHSMLVGREGMSMPPGEGFVAGEAVAQGLDYLRARVGVPRDMSYE AARMFRGHLGWYAEELRKVCQA* back to topmRNA from alignment at chr2:1124776..1126745- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04120.1 ID=NO02G04120.1|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1970bp|location=Sequence derived from alignment at chr2:1124776..1126745- (Nannochloropsis oceanica) ACAGGTCTTCCTGCTGTCCTACGCGGCAATGCTTGCGCCGCCTTGCCTGC
TACAGCCGTTGCTACTTATCTTGAGCTGTGCGTCATTTGCTGTTCAAGGG
TTTGTGCCGCACCCGCCCACGTGTTCTCCCATCCCTACCCTACGCAAATC
TAAGCACTTCACCTCGTCCTCACTGATCAAACGCGAATCCTCCCTCGGCG
GCATGTTCTCGCAAATGTTGGGAGGGATGCTCAAGGGCCCGGCTCCACCT
CCAGCGGACATGGAAGCATTCAAAGACCCGGCACCTAGCTGGACAGAGCT
ACAGGCACTATTGATCGAGAAGCAGACTGTGGAGGAGCGGGCCTTGCCTG
ATCTGCGCGCGAAGGGCCGCGGCCCCCCCTCTAGCAAGGCATCACTGCGT
TTGTTTGAAGCGCCGGACGGGCACGAACCGCGCGTGGTGCTTTATAGGGA
TACGGCTGCTTGGTGCCCGTATTGCCAGAAGGTGTGGATGTATTTAGGTA
CGTCTTGAGCATTAAAGATGGAAGCTGGAGGAAGATACATTGCGAAATTG
AAGGAAAGAAGCCATGAAAGGCTACAAAAGAAAGGGCGTGCGGGGAATGT
ACTTTGATACAATCGCCTTCATTGGTTTGTAGTATTTGCAGGGCACCTCT
CTGTCCAAATCAATCCTCCACTCATTTCCAATCTCCTATCCTTTTCCTTC
CTTCCTCCATTCCTTCTTCCATTCCTGACACCTTCCACTCAGAGGAAAAG
CGCATTCCCTATCAAGTCAGAAAAGTACCCATGCGGTGCTACGGTCAAAA
ACCCGCCTGGTTTTCACGTCTGTCTGCCTCGGGTCTCTTGCCAGTCATGG
AGCTCGATGGCGACATCGTCATTGAATCAGATGTGATCATCCAAACACTC
GAAGATCGCTTCCCAGACGCCATCCCCCTCCTCCCTCTCGCCTCGGACCC
CGACGCAGCCTTAGTCTCGCCTTTACTCAGGCTTGAACGAGAGTTGTTCA
GTGGTTGGTTGCGGTGGTTGACAGGGAGCACCACCACAAATGAGAGGAGT
AAGATGATCTTCGAGGGAGTGTTAGGGAAGGTAGAAACAGCATTGGCCGC
AAAGGGCGGGCCGTATTTCTTGGGCGAGACATTTTCATTGATTGATTGCA
TTTTTGCCCCGTTCATGGAGAGGATGGCAGGAACCCTGTGCTATTACAAG
GGGTTTGAGATGCGCAATAATGCGAAATACGTAGGAGTGGAACGGTGGTT
CCGGGCGATGGAAAGCAGGGAGAGCTTCGCGAACATCAAGAGTGACTGGT
ACACTCATGCAATGGACATGCCCCCCCAGGTCGGCTCTTGCTCCTCCATC
CCCGAAGCTATCCCTTATGCCGCAGAGCTCTCTGGAAGGGATGGAGTTTC
CTGGACCTTGCCACTCAAACAAAACGGGGTGGAACCTCTCCTCCCCTCCT
TCGAGGAAGGTGCCGCCAGGCGAGAAGCAGTGGCACAGCTGCTGGCGAAT
GCCGAGGCAGTTGTTAAGTTTGCTGCACGTGGCTTGGGCGAACCGGGCGT
TCCCCCCGTGACGGCTGATTTGGCCGACCCGAACGCGAAACCAAATGAAG
CTTATGTGCCTTTACTTGATGCTGCTTTGCGAGGGGTGGCTCATTCAATG
TTGGTAGGGAGGGAGGGCATGTCGATGCCGCCTGGGGAGGGTTTTGTGGC
AGGGGAGGCAGTTGCACAGGGGTTGGATTACCTAAGGGCAAGAGTAGGGG
TACCGAGGGACATGTCATATGAGGCGGCGAGAATGTTCAGGGGTCACTTG
GGCTGGTATGCGGAAGAGTTGAGGAAGGTATGTCAGGCTTAGGAGGGGTT
TTTGGGAGAAATCTTTCAGTCAGGGAGGGTTTCGATTGTACGGAGCGAGG
TGAATGAGTTTCCAAAAAAAGAAAATCAGGAAGGAAAGTGTGTCGCGCGA
AACCCTTAGTTGCCGTAAGC back to topCoding sequence (CDS) from alignment at chr2:1124776..1126745- >NO02G04120.1 ID=NO02G04120.1|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr2:1124776..1126745- (Nannochloropsis oceanica) ATGCTTGCGCCGCCTTGCCTGCTACAGCCGTTGCTACTTATCTTGAGCTG TGCGTCATTTGCTGTTCAAGGGTTTGTGCCGCACCCGCCCACGTGTTCTC CCATCCCTACCCTACGCAAATCTAAGCACTTCACCTCGTCCTCACTGATC AAACGCGAATCCTCCCTCGGCGGCATGTTCTCGCAAATGTTGGGAGGGAT GCTCAAGGGCCCGGCTCCACCTCCAGCGGACATGGAAGCATTCAAAGACC CGGCACCTAGCTGGACAGAGCTACAGGCACTATTGATCGAGAAGCAGACT GTGGAGGAGCGGGCCTTGCCTGATCTGCGCGCGAAGGGCCGCGGCCCCCC CTCTAGCAAGGCATCACTGCGTTTGTTTGAAGCGCCGGACGGGCACGAAC CGCGCGTGGTGCTTTATAGGGATACGGCTGCTTGGTGCCCGTATTGCCAG AAGGTGTGGATGTATTTAGAGGAAAAGCGCATTCCCTATCAAGTCAGAAA AGTACCCATGCGGTGCTACGGTCAAAAACCCGCCTGGTTTTCACGTCTGT CTGCCTCGGGTCTCTTGCCAGTCATGGAGCTCGATGGCGACATCGTCATT GAATCAGATGTGATCATCCAAACACTCGAAGATCGCTTCCCAGACGCCAT CCCCCTCCTCCCTCTCGCCTCGGACCCCGACGCAGCCTTAGTCTCGCCTT TACTCAGGCTTGAACGAGAGTTGTTCAGTGGTTGGTTGCGGTGGTTGACA GGGAGCACCACCACAAATGAGAGGAGTAAGATGATCTTCGAGGGAGTGTT AGGGAAGGTAGAAACAGCATTGGCCGCAAAGGGCGGGCCGTATTTCTTGG GCGAGACATTTTCATTGATTGATTGCATTTTTGCCCCGTTCATGGAGAGG ATGGCAGGAACCCTGTGCTATTACAAGGGGTTTGAGATGCGCAATAATGC GAAATACGTAGGAGTGGAACGGTGGTTCCGGGCGATGGAAAGCAGGGAGA GCTTCGCGAACATCAAGAGTGACTGGTACACTCATGCAATGGACATGCCC CCCCAGGTCGGCTCTTGCTCCTCCATCCCCGAAGCTATCCCTTATGCCGC AGAGCTCTCTGGAAGGGATGGAGTTTCCTGGACCTTGCCACTCAAACAAA ACGGGGTGGAACCTCTCCTCCCCTCCTTCGAGGAAGGTGCCGCCAGGCGA GAAGCAGTGGCACAGCTGCTGGCGAATGCCGAGGCAGTTGTTAAGTTTGC TGCACGTGGCTTGGGCGAACCGGGCGTTCCCCCCGTGACGGCTGATTTGG CCGACCCGAACGCGAAACCAAATGAAGCTTATGTGCCTTTACTTGATGCT GCTTTGCGAGGGGTGGCTCATTCAATGTTGGTAGGGAGGGAGGGCATGTC GATGCCGCCTGGGGAGGGTTTTGTGGCAGGGGAGGCAGTTGCACAGGGGT TGGATTACCTAAGGGCAAGAGTAGGGGTACCGAGGGACATGTCATATGAG GCGGCGAGAATGTTCAGGGGTCACTTGGGCTGGTATGCGGAAGAGTTGAG GAAGGTATGTCAGGCTTAG back to top
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