NO02G04120.1, NO02G04120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04120.1
Unique NameNO02G04120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr2:1124776..1126745 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1124776..1126745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G04120.1 vs.
Match: EWM30297.1 (glutathione s-transferase [Nannochloropsis gaditana])

HSP 1 Score: 770.8 bits (1989), Expect = 2.800e-219
Identity = 383/516 (74.22%), Postives = 429/516 (83.14%), Query Frame = 0
Query:    8 LQPLLLILSCASFAVQGFV--PHPPTCSPIPTLRKSKHFTSSSLIKRESSLGGMFSQMLGGMLKGPAPPPADMEAFKDPAPSWTELQALLIEKQTVEERALPDLRAKGRGPPSSKASLRLFEAPDGHEPRVVLYRDTAAWCPYCQKVWMYLEEKRIPYQVRKVPMRCYGQKPAWFSRLSASGLLPVMELDGDIVIESDVIIQTLEDRFPDAIPLLPLASDPDAALVSPLLRLERELFSGWLRWLTGSTTTNERSKMIFEGVLGKVETALAAKGGPYFLGETFSLIDCIFAPFMERMAGTLCYYKGFEMRNNAKYVGVERWFRAMESRESFANIKSDWYTHAMDMPPQVGSCSSIPEAIPYAAELSGRDGVSWTLPLKQNGVEPLLPSFEEGAARREAVAQLLANAEAVVKFAARGLGEPGVPPVTADLADPNAKPNEAYVPLLDAALRGVAHSMLVGREGMSMPPGEGFVAGEAVAQGLDYLRARVGVPRDMSYEAARMFRGHLGWYAEELRKVCQ 522
            L P   IL+  S  V GF   P P   SP  T  K+        + R SSLGGMF+QML GM+KG APPPA M  FKDPAPSW +L+A L ++QT EERALPDLRA GRGPPSSKA +RLF+APDG+EPRV LYRDTAAWCPYC+KVWMYLEEKRIPY+V+KVPMRCYGQKPAWFSRLSA+GLLPVMELDGD+VIESDVIIQTLED+FP+A+PLLPLASDPDAA V PLLRLERELFSGWLRWLTGST+TNERSKMIFEGVLG+VE AL+ +GGPYFLG  FSLIDCI+ PFMER+AG+LCYYKGF +RNN +Y  +ERWF+ MESRESFANIKSDWYTHAMDMPPQVGSCSSIPEA PYAAELSG+DG SWTLP++ +GVEP   + + G+ +REA AQLL+N EAVV FAAR LGEPGVPPV A+LADPNAK NEAY+PLLDAALR V HS+L G E  ++PP  GFVA   VA+GLDYLRARVGVPRDMSYEAAR FR HLGWYA  LR   Q
Sbjct:    9 LLPTTFILASISTTVVGFFLSPSPTLVSPGRTTSKAWRNPLKPSLTRYSSLGGMFTQMLSGMVKGSAPPPAGMSDFKDPAPSWADLKASLSQRQTPEERALPDLRAAGRGPPSSKAEIRLFDAPDGYEPRVTLYRDTAAWCPYCEKVWMYLEEKRIPYRVKKVPMRCYGQKPAWFSRLSATGLLPVMELDGDVVIESDVIIQTLEDKFPEAVPLLPLASDPDAAAVGPLLRLERELFSGWLRWLTGSTSTNERSKMIFEGVLGRVEAALSERGGPYFLGSGFSLIDCIYVPFMERIAGSLCYYKGFVIRNNPQYPAIERWFQGMESRESFANIKSDWYTHAMDMPPQVGSCSSIPEAAPYAAELSGKDG-SWTLPVRPDGVEPFRRTRDVGSCQREAAAQLLSNPEAVVAFAARALGEPGVPPVMAELADPNAKANEAYIPLLDAALRAVTHSLLEGPE--AVPPPTGFVAPAEVARGLDYLRARVGVPRDMSYEAARYFRAHLGWYAGLLRASVQ 521          
The following BLAST results are available for this feature:
BLAST of NO02G04120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30297.12.800e-21974.22glutathione s-transferase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04120NO02G04120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04120.1NO02G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04120.1.cds1NO02G04120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04120.1.cds2NO02G04120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04120.1 ID=NO02G04120.1|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp
ACAGGTCTTCCTGCTGTCCTACGCGGCAATGCTTGCGCCGCCTTGCCTGC
TACAGCCGTTGCTACTTATCTTGAGCTGTGCGTCATTTGCTGTTCAAGGG
TTTGTGCCGCACCCGCCCACGTGTTCTCCCATCCCTACCCTACGCAAATC
TAAGCACTTCACCTCGTCCTCACTGATCAAACGCGAATCCTCCCTCGGCG
GCATGTTCTCGCAAATGTTGGGAGGGATGCTCAAGGGCCCGGCTCCACCT
CCAGCGGACATGGAAGCATTCAAAGACCCGGCACCTAGCTGGACAGAGCT
ACAGGCACTATTGATCGAGAAGCAGACTGTGGAGGAGCGGGCCTTGCCTG
ATCTGCGCGCGAAGGGCCGCGGCCCCCCCTCTAGCAAGGCATCACTGCGT
TTGTTTGAAGCGCCGGACGGGCACGAACCGCGCGTGGTGCTTTATAGGGA
TACGGCTGCTTGGTGCCCGTATTGCCAGAAGGTGTGGATGTATTTAGAGG
AAAAGCGCATTCCCTATCAAGTCAGAAAAGTACCCATGCGGTGCTACGGT
CAAAAACCCGCCTGGTTTTCACGTCTGTCTGCCTCGGGTCTCTTGCCAGT
CATGGAGCTCGATGGCGACATCGTCATTGAATCAGATGTGATCATCCAAA
CACTCGAAGATCGCTTCCCAGACGCCATCCCCCTCCTCCCTCTCGCCTCG
GACCCCGACGCAGCCTTAGTCTCGCCTTTACTCAGGCTTGAACGAGAGTT
GTTCAGTGGTTGGTTGCGGTGGTTGACAGGGAGCACCACCACAAATGAGA
GGAGTAAGATGATCTTCGAGGGAGTGTTAGGGAAGGTAGAAACAGCATTG
GCCGCAAAGGGCGGGCCGTATTTCTTGGGCGAGACATTTTCATTGATTGA
TTGCATTTTTGCCCCGTTCATGGAGAGGATGGCAGGAACCCTGTGCTATT
ACAAGGGGTTTGAGATGCGCAATAATGCGAAATACGTAGGAGTGGAACGG
TGGTTCCGGGCGATGGAAAGCAGGGAGAGCTTCGCGAACATCAAGAGTGA
CTGGTACACTCATGCAATGGACATGCCCCCCCAGGTCGGCTCTTGCTCCT
CCATCCCCGAAGCTATCCCTTATGCCGCAGAGCTCTCTGGAAGGGATGGA
GTTTCCTGGACCTTGCCACTCAAACAAAACGGGGTGGAACCTCTCCTCCC
CTCCTTCGAGGAAGGTGCCGCCAGGCGAGAAGCAGTGGCACAGCTGCTGG
CGAATGCCGAGGCAGTTGTTAAGTTTGCTGCACGTGGCTTGGGCGAACCG
GGCGTTCCCCCCGTGACGGCTGATTTGGCCGACCCGAACGCGAAACCAAA
TGAAGCTTATGTGCCTTTACTTGATGCTGCTTTGCGAGGGGTGGCTCATT
CAATGTTGGTAGGGAGGGAGGGCATGTCGATGCCGCCTGGGGAGGGTTTT
GTGGCAGGGGAGGCAGTTGCACAGGGGTTGGATTACCTAAGGGCAAGAGT
AGGGGTACCGAGGGACATGTCATATGAGGCGGCGAGAATGTTCAGGGGTC
ACTTGGGCTGGTATGCGGAAGAGTTGAGGAAGGTATGTCAGGCTTAGGAG
GGGTTTTTGGGAGAAATCTTTCAGTCAGGGAGGGTTTCGATTGTACGGAG
CGAGGTGAATGAGTTTCCAAAAAAAGAAAATCAGGAAGGAAAGTGTGTCG
CGCGAAACCCTTAGTTGCCGTAAGC
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protein sequence of NO02G04120.1

>NO02G04120.1-protein ID=NO02G04120.1-protein|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MLAPPCLLQPLLLILSCASFAVQGFVPHPPTCSPIPTLRKSKHFTSSSLI
KRESSLGGMFSQMLGGMLKGPAPPPADMEAFKDPAPSWTELQALLIEKQT
VEERALPDLRAKGRGPPSSKASLRLFEAPDGHEPRVVLYRDTAAWCPYCQ
KVWMYLEEKRIPYQVRKVPMRCYGQKPAWFSRLSASGLLPVMELDGDIVI
ESDVIIQTLEDRFPDAIPLLPLASDPDAALVSPLLRLERELFSGWLRWLT
GSTTTNERSKMIFEGVLGKVETALAAKGGPYFLGETFSLIDCIFAPFMER
MAGTLCYYKGFEMRNNAKYVGVERWFRAMESRESFANIKSDWYTHAMDMP
PQVGSCSSIPEAIPYAAELSGRDGVSWTLPLKQNGVEPLLPSFEEGAARR
EAVAQLLANAEAVVKFAARGLGEPGVPPVTADLADPNAKPNEAYVPLLDA
ALRGVAHSMLVGREGMSMPPGEGFVAGEAVAQGLDYLRARVGVPRDMSYE
AARMFRGHLGWYAEELRKVCQA*
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mRNA from alignment at chr2:1124776..1126745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04120.1 ID=NO02G04120.1|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1970bp|location=Sequence derived from alignment at chr2:1124776..1126745- (Nannochloropsis oceanica)
ACAGGTCTTCCTGCTGTCCTACGCGGCAATGCTTGCGCCGCCTTGCCTGC TACAGCCGTTGCTACTTATCTTGAGCTGTGCGTCATTTGCTGTTCAAGGG TTTGTGCCGCACCCGCCCACGTGTTCTCCCATCCCTACCCTACGCAAATC TAAGCACTTCACCTCGTCCTCACTGATCAAACGCGAATCCTCCCTCGGCG GCATGTTCTCGCAAATGTTGGGAGGGATGCTCAAGGGCCCGGCTCCACCT CCAGCGGACATGGAAGCATTCAAAGACCCGGCACCTAGCTGGACAGAGCT ACAGGCACTATTGATCGAGAAGCAGACTGTGGAGGAGCGGGCCTTGCCTG ATCTGCGCGCGAAGGGCCGCGGCCCCCCCTCTAGCAAGGCATCACTGCGT TTGTTTGAAGCGCCGGACGGGCACGAACCGCGCGTGGTGCTTTATAGGGA TACGGCTGCTTGGTGCCCGTATTGCCAGAAGGTGTGGATGTATTTAGGTA CGTCTTGAGCATTAAAGATGGAAGCTGGAGGAAGATACATTGCGAAATTG AAGGAAAGAAGCCATGAAAGGCTACAAAAGAAAGGGCGTGCGGGGAATGT ACTTTGATACAATCGCCTTCATTGGTTTGTAGTATTTGCAGGGCACCTCT CTGTCCAAATCAATCCTCCACTCATTTCCAATCTCCTATCCTTTTCCTTC CTTCCTCCATTCCTTCTTCCATTCCTGACACCTTCCACTCAGAGGAAAAG CGCATTCCCTATCAAGTCAGAAAAGTACCCATGCGGTGCTACGGTCAAAA ACCCGCCTGGTTTTCACGTCTGTCTGCCTCGGGTCTCTTGCCAGTCATGG AGCTCGATGGCGACATCGTCATTGAATCAGATGTGATCATCCAAACACTC GAAGATCGCTTCCCAGACGCCATCCCCCTCCTCCCTCTCGCCTCGGACCC CGACGCAGCCTTAGTCTCGCCTTTACTCAGGCTTGAACGAGAGTTGTTCA GTGGTTGGTTGCGGTGGTTGACAGGGAGCACCACCACAAATGAGAGGAGT AAGATGATCTTCGAGGGAGTGTTAGGGAAGGTAGAAACAGCATTGGCCGC AAAGGGCGGGCCGTATTTCTTGGGCGAGACATTTTCATTGATTGATTGCA TTTTTGCCCCGTTCATGGAGAGGATGGCAGGAACCCTGTGCTATTACAAG GGGTTTGAGATGCGCAATAATGCGAAATACGTAGGAGTGGAACGGTGGTT CCGGGCGATGGAAAGCAGGGAGAGCTTCGCGAACATCAAGAGTGACTGGT ACACTCATGCAATGGACATGCCCCCCCAGGTCGGCTCTTGCTCCTCCATC CCCGAAGCTATCCCTTATGCCGCAGAGCTCTCTGGAAGGGATGGAGTTTC CTGGACCTTGCCACTCAAACAAAACGGGGTGGAACCTCTCCTCCCCTCCT TCGAGGAAGGTGCCGCCAGGCGAGAAGCAGTGGCACAGCTGCTGGCGAAT GCCGAGGCAGTTGTTAAGTTTGCTGCACGTGGCTTGGGCGAACCGGGCGT TCCCCCCGTGACGGCTGATTTGGCCGACCCGAACGCGAAACCAAATGAAG CTTATGTGCCTTTACTTGATGCTGCTTTGCGAGGGGTGGCTCATTCAATG TTGGTAGGGAGGGAGGGCATGTCGATGCCGCCTGGGGAGGGTTTTGTGGC AGGGGAGGCAGTTGCACAGGGGTTGGATTACCTAAGGGCAAGAGTAGGGG TACCGAGGGACATGTCATATGAGGCGGCGAGAATGTTCAGGGGTCACTTG GGCTGGTATGCGGAAGAGTTGAGGAAGGTATGTCAGGCTTAGGAGGGGTT TTTGGGAGAAATCTTTCAGTCAGGGAGGGTTTCGATTGTACGGAGCGAGG TGAATGAGTTTCCAAAAAAAGAAAATCAGGAAGGAAAGTGTGTCGCGCGA AACCCTTAGTTGCCGTAAGC
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Coding sequence (CDS) from alignment at chr2:1124776..1126745-

>NO02G04120.1 ID=NO02G04120.1|Name=NO02G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr2:1124776..1126745- (Nannochloropsis oceanica)
ATGCTTGCGCCGCCTTGCCTGCTACAGCCGTTGCTACTTATCTTGAGCTG
TGCGTCATTTGCTGTTCAAGGGTTTGTGCCGCACCCGCCCACGTGTTCTC
CCATCCCTACCCTACGCAAATCTAAGCACTTCACCTCGTCCTCACTGATC
AAACGCGAATCCTCCCTCGGCGGCATGTTCTCGCAAATGTTGGGAGGGAT
GCTCAAGGGCCCGGCTCCACCTCCAGCGGACATGGAAGCATTCAAAGACC
CGGCACCTAGCTGGACAGAGCTACAGGCACTATTGATCGAGAAGCAGACT
GTGGAGGAGCGGGCCTTGCCTGATCTGCGCGCGAAGGGCCGCGGCCCCCC
CTCTAGCAAGGCATCACTGCGTTTGTTTGAAGCGCCGGACGGGCACGAAC
CGCGCGTGGTGCTTTATAGGGATACGGCTGCTTGGTGCCCGTATTGCCAG
AAGGTGTGGATGTATTTAGAGGAAAAGCGCATTCCCTATCAAGTCAGAAA
AGTACCCATGCGGTGCTACGGTCAAAAACCCGCCTGGTTTTCACGTCTGT
CTGCCTCGGGTCTCTTGCCAGTCATGGAGCTCGATGGCGACATCGTCATT
GAATCAGATGTGATCATCCAAACACTCGAAGATCGCTTCCCAGACGCCAT
CCCCCTCCTCCCTCTCGCCTCGGACCCCGACGCAGCCTTAGTCTCGCCTT
TACTCAGGCTTGAACGAGAGTTGTTCAGTGGTTGGTTGCGGTGGTTGACA
GGGAGCACCACCACAAATGAGAGGAGTAAGATGATCTTCGAGGGAGTGTT
AGGGAAGGTAGAAACAGCATTGGCCGCAAAGGGCGGGCCGTATTTCTTGG
GCGAGACATTTTCATTGATTGATTGCATTTTTGCCCCGTTCATGGAGAGG
ATGGCAGGAACCCTGTGCTATTACAAGGGGTTTGAGATGCGCAATAATGC
GAAATACGTAGGAGTGGAACGGTGGTTCCGGGCGATGGAAAGCAGGGAGA
GCTTCGCGAACATCAAGAGTGACTGGTACACTCATGCAATGGACATGCCC
CCCCAGGTCGGCTCTTGCTCCTCCATCCCCGAAGCTATCCCTTATGCCGC
AGAGCTCTCTGGAAGGGATGGAGTTTCCTGGACCTTGCCACTCAAACAAA
ACGGGGTGGAACCTCTCCTCCCCTCCTTCGAGGAAGGTGCCGCCAGGCGA
GAAGCAGTGGCACAGCTGCTGGCGAATGCCGAGGCAGTTGTTAAGTTTGC
TGCACGTGGCTTGGGCGAACCGGGCGTTCCCCCCGTGACGGCTGATTTGG
CCGACCCGAACGCGAAACCAAATGAAGCTTATGTGCCTTTACTTGATGCT
GCTTTGCGAGGGGTGGCTCATTCAATGTTGGTAGGGAGGGAGGGCATGTC
GATGCCGCCTGGGGAGGGTTTTGTGGCAGGGGAGGCAGTTGCACAGGGGT
TGGATTACCTAAGGGCAAGAGTAGGGGTACCGAGGGACATGTCATATGAG
GCGGCGAGAATGTTCAGGGGTCACTTGGGCTGGTATGCGGAAGAGTTGAG
GAAGGTATGTCAGGCTTAG
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Synonyms
Publications