NO02G04070.3, NO02G04070.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04070.3
Unique NameNO02G04070.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1621
Alignment locationchr2:1107946..1110113 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1107946..1110113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04070.3 vs.
Match: EWM30356.1 (subunit of proteaseome activator complex [Nannochloropsis gaditana])

HSP 1 Score: 393.7 bits (1010), Expect = 4.300e-106
Identity = 208/256 (81.25%), Postives = 222/256 (86.72%), Query Frame = 0 
Query:    1 MSSLLSNELLKMENDAVLPPESEVTPVIHPIPTTSETAAAGGREGEAAGGARRKKRKMD---------VAVAHT-AIAHSDSEEESEDEMGHLNGRHVHAHWDYTHDFAVPCNKTIIKVIELLRKEWKEAIELVGAVKLWIQLSIPPIESGGQFHVGVQEECVQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVFDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSTKNQSFGSHMTI 247
            ++SLL NELL++ENDAVLPPESEVTPVI PI ++ E       E  AAGG RRKKRKM          +  AH  A +HSDSEEESEDE+GHLNGRH HAHWDYTHDFAVPCNKTI+KVIELLRKEWKEA+ELVG VKLWIQLSIPPIESGGQFHVGVQEE +QELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSV+DYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLS K+QSFGS MTI
Sbjct:   37 LTSLLENELLRLENDAVLPPESEVTPVIPPISSSEEKG-----ETSAAGG-RRKKRKMTETQQAAASVIPAAHVDAPSHSDSEEESEDEIGHLNGRHGHAHWDYTHDFAVPCNKTIMKVIELLRKEWKEAVELVGCVKLWIQLSIPPIESGGQFHVGVQEEVIQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVYDYRQSLLEADSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSIKDQSFGSRMTI 286
The following BLAST results are available for this feature:
BLAST of NO02G04070.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30356.14.300e-10681.25subunit of proteaseome activator complex [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04070NO02G04070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04070.3NO02G04070.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04070.3.cds1NO02G04070.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04070.3.cds2NO02G04070.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04070.3.cds3NO02G04070.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04070.3.cds4NO02G04070.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04070.3 ID=NO02G04070.3|Name=NO02G04070.3|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp
GGAGAAGATCCTTGCCCTGTCTGTCCATGTAGAGTGTGTGTGAGGTATGA
TGGTACGAGTTGGATGCATCAGCAGGATGATGATGTCGGTCTGAACGAAG
ACGCTGCCCACGATCAAGTACGACGCGACGAGCTACGATAGCAGCGACAT
CGATACACGAAACACCACGTCGTGGGTCTGTGGGAGAGTCTGTGGGTGTG
CTGCTTATGCGGTCAGTAGGGTGGAGTGACACATCAATACGAGCTAGGGC
GACGCACACATCCTGTGCCACACGGGTGTAGTAAGTACAACGCCACGCGA
TAAAGCAAGCATTCCATTTTTCGGCAAAGTCTTTTAGCCCGAATACCATT
CCATCCCCTGCTGTACAAGCGTGCAAACTCGATTCGCGTAACAAAGGCAA
CTCTTTTAACTTTGCTCATTGTAATACCCCAAACAGGTGAAAATAGACAC
GCGCTCTGCGTCTAGGGCTTCTTTTCTGCTTGTTCCTTGTCGTCGTCCTT
GTCACTTTCCAAAAAGCATTTGATCAACATCAAACCAAACGATCCTAGCA
CAATGAGCAGCAACAGCAGTAGCAGCAGCAGCAACAAGGCAGTGGTTGCC
TTGGCGGAGGAGCTCAAACTTAAGGGCATCGAAACGTACAGGACGGGTAA
GCCCTCCCTCCCTCGACGCCCTCCTTCCCTCTTTGCCTGACTTCAAAGAG
GACCACCTTCTCAGCGCTGAATGAAACGAGGGCACTCAAGTTATAAGTTG
TCCTCCTTCTCCTCCTCCCTTTGTCCCTTGTCTTTGACCTTTTCCCCACC
ACCTTTGGTAATCATTTCTTCCTATCCTTCCAGAATTTCCTCGCAAAATC
GTTCTGATGAGCAGCCTCCTTAGCAACGAACTCCTGAAAATGGAGAATGA
TGCCGTGCTGCCCCCGGAGTCGGAAGTGACGCCTGTTATACATCCCATAC
CAACAACGAGTGAAACAGCCGCAGCTGGAGGAAGGGAGGGAGAGGCGGCG
GGAGGGGCTCGGAGGAAGAAACGGAAGATGGATGTAGCAGTGGCACATAC
CGCAATTGCGCACTCCGACTCGGAGGAGGAGTCCGAGGACGAAATGGGCC
ATTTGAATGGGCGGCATGTGCATGCGCATTGGGATTACACTCATGATTTT
GCGGTGCCTTGTAACAAGACAATCATCAAGGTGATCGAGTTGCTGCGGAA
GGAGTGGAAAGAGGCCATTGAACTGGTGGGAGCGGTGAAGCTTTGGATTC
AACTAAGCATCCCGCCGATTGAGTCGGGGGGACAGTTCCACGTGGGCGTG
CAAGAGGAGTGTGTCCAAGAGCTCAATCGCTTTGAGGATGTGGCTTACAA
CTACCTCGAGTCCCCCACAAAGTATTTTCAAACCCGAGCCAAGCTCGGCG
CCAAGCTATCGCGACATCGCTCTGTTTTCGACTATCGACAATCTCTGCTC
GAGGCCGACTCGTTGGAGTACCTGAATTTAAAGATGGCAGCGACGGAGCT
GCGAAACTCGTATCTGGTCGCCTATGACTTGCTCTCCAAGAACGAAGACA
AGCTCTCGACCAAGAATCAGAGCTTCGGCTCACATATGACCATCTAGATG
GAGGGAGGGAGGGAGGGGGAA
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protein sequence of NO02G04070.3

>NO02G04070.3-protein ID=NO02G04070.3-protein|Name=NO02G04070.3|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MSSLLSNELLKMENDAVLPPESEVTPVIHPIPTTSETAAAGGREGEAAGG
ARRKKRKMDVAVAHTAIAHSDSEEESEDEMGHLNGRHVHAHWDYTHDFAV
PCNKTIIKVIELLRKEWKEAIELVGAVKLWIQLSIPPIESGGQFHVGVQE
ECVQELNRFEDVAYNYLESPTKYFQTRAKLGAKLSRHRSVFDYRQSLLEA
DSLEYLNLKMAATELRNSYLVAYDLLSKNEDKLSTKNQSFGSHMTI*
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mRNA from alignment at chr2:1107946..1110113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04070.3 ID=NO02G04070.3|Name=NO02G04070.3|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at chr2:1107946..1110113+ (Nannochloropsis oceanica)
GGAGAAGATCCTTGCCCTGTCTGTCCATGTAGAGTGTGTGTGAGGTATGA
TGGTACGAGTTGGATGCATCAGCAGGATGATGATGTCGGTCTGAACGAAG
ACGCTGCCCACGATCAAGTACGACGCGACGAGCTACGATAGCAGCGACAT
CGATACACGAAACACCACGTCGTGGGTCTGTGGGAGAGTCTGTGGGTGTG
CTGCTTATGCGGTCAGTAGGGTGGAGTGACACATCAATACGAGCTAGGGC
GACGCACACATCCTGTGCCACACGGGTGTAGTAAGTACAACGCCACGCGA
TAAAGCAAGCATTCCATTTTTCGGCAAAGTCTTTTAGCCCGAATACCATT
CCATCCCCTGCTGTACAAGCGTGCAAACTCGATTCGCGTAACAAAGGCAA
CTCTTTTAACTTTGCTCATTGTAATACCCCAAACAGGTGAAAATAGACAC
GCGCTCTGCGTCTAGGGCTTCTTTTCTGCTTGTTCCTTGTCGTCGTCCTT
GTCACTTTCCAAAAAGCATTTGATCAACATCAAACCAAACGATCCTAGCA
CAATGAGCAGCAACAGCAGTAGCAGCAGCAGCAACAAGGCAGTGGTTGCC
TTGGCGGAGGAGCTCAAACTTAAGGGCATCGAAACGTACAGGACGGGTAA
GCCCTCCCTCCCTCGACGCCCTCCTTCCCTCTTTGCCTGACTTCAAAGAG
GACCACCTTCTCAGCGCTGAATGAAACGAGGGCACTCAAGTTATAAGTTG
TCCTCCTTCTCCTCCTCCCTTTGTCCCTTGTCTTTGACCTTTTCCCCACC
ACCTTTGGTAATCATTTCTTCCTATCCTTCCAGAATTTCCTCGCAAAATC
GTTCTGATGAGCAGCCTCCTTAGCAACGAACTCCTGAAAATGGAGAATGA
TGCCGTGCTGCCCCCGGAGTCGGAAGTGACGCCTGTTATACATCCCATAC
CAACAACGAGTGAAACAGCCGCAGCTGGAGGAAGGGAGGGAGAGGCGGCG
GGAGGGGCTCGGAGGAAGAAACGGAAGATGGATGTAGCAGTGGCACATAC
CGCAATTGCGCACTCCGACTCGGAGGAGGAGTCCGAGGACGAAATGGGCC
ATTTGAATGGGCGGCATGTGCATGCGCATTGGGATTACACTCATGATTTT
GCGGTGCCTTGTAACAAGACAATCATCAAGGTGGGCACCACTTCCCCACC
CCACCGCACTAGCTCTTCCCTTTTTCCATACCTTCCTCCTTCCCTTCATT
CACTTCCCGACGTCCATGCTCTCACTCGCCAATCAATCTCTCTCAACATT
CTATCCAGGTGATCGAGTTGCTGCGGAAGGAGTGGAAAGAGGCCATTGAA
CTGGTGGGAGCGGTGAAGCTTTGGATTCAACTAAGCATCCCGCCGATTGA
GTCGGGGGGACAGTTCCACGTGGGCGTGCAAGAGGAGTGTGTCCAAGAGC
TCAATCGCTTTGAGGATGTGGTACGTCTTGTTAAGAGGACGGCCAAGAGG
GGGGGAATTTGGCGTGGCGAGGCAGAGGGCGGCAAGGGTCTATGCGGGAG
AGCTCGGGTGTGTGTAGGCATGAGAGAGGCAGCGACTTTGATAGTACATT
TAAAAGACTGGCGGAAGAAATCGACCCCATTGAGAATCCCCCCCCCCCTT
CTCACTCACTTAAGGCCTAGTTGGAAACTCCCATGGTAATGCTCACCGTA
TTGACTCTTTCCTCTTTCCCCCCTCCCCCTTACACAGGCTTACAACTACC
TCGAGTCCCCCACAAAGTATTTTCAAACCCGAGCCAAGCTCGGCGCCAAG
CTATCGCGACATCGCTCTGTTTTCGACTATCGACAATCTCTGCTCGAGGC
CGACTCGTTGGAGTACCTGAATTTAAAGATGGCAGCGACGGAGCTGCGAA
ACTCGGTACGTGTCTTTCCTTGAGTGGCGCGTTGAGATGGGATCGGAAAT
GGAAAGCTCAATCACCCATCCATCTTAATCACCCATCCGGCGTCTTGTGT
ATCCGCATGCCTGCTCAACCTCTTTTCCACTCTTCGTCCCTCACTCCGGC
TCCACAGTATCTGGTCGCCTATGACTTGCTCTCCAAGAACGAAGACAAGC
TCTCGACCAAGAATCAGAGCTTCGGCTCACATATGACCATCTAGATGGAG
GGAGGGAGGGAGGGGGAA
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Coding sequence (CDS) from alignment at chr2:1107946..1110113+

>NO02G04070.3 ID=NO02G04070.3|Name=NO02G04070.3|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr2:1107946..1110113+ (Nannochloropsis oceanica)
ATGAGCAGCCTCCTTAGCAACGAACTCCTGAAAATGGAGAATGATGCCGT
GCTGCCCCCGGAGTCGGAAGTGACGCCTGTTATACATCCCATACCAACAA
CGAGTGAAACAGCCGCAGCTGGAGGAAGGGAGGGAGAGGCGGCGGGAGGG
GCTCGGAGGAAGAAACGGAAGATGGATGTAGCAGTGGCACATACCGCAAT
TGCGCACTCCGACTCGGAGGAGGAGTCCGAGGACGAAATGGGCCATTTGA
ATGGGCGGCATGTGCATGCGCATTGGGATTACACTCATGATTTTGCGGTG
CCTTGTAACAAGACAATCATCAAGGTGATCGAGTTGCTGCGGAAGGAGTG
GAAAGAGGCCATTGAACTGGTGGGAGCGGTGAAGCTTTGGATTCAACTAA
GCATCCCGCCGATTGAGTCGGGGGGACAGTTCCACGTGGGCGTGCAAGAG
GAGTGTGTCCAAGAGCTCAATCGCTTTGAGGATGTGGCTTACAACTACCT
CGAGTCCCCCACAAAGTATTTTCAAACCCGAGCCAAGCTCGGCGCCAAGC
TATCGCGACATCGCTCTGTTTTCGACTATCGACAATCTCTGCTCGAGGCC
GACTCGTTGGAGTACCTGAATTTAAAGATGGCAGCGACGGAGCTGCGAAA
CTCGTATCTGGTCGCCTATGACTTGCTCTCCAAGAACGAAGACAAGCTCT
CGACCAAGAATCAGAGCTTCGGCTCACATATGACCATCTAG
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Synonyms
Publications