NO02G04060.1, NO02G04060.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04060.1
Unique Name	NO02G04060.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1668
Alignment location	chr2:1105886..1108400 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1105886..1108400 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G04060.1 vs.
Match: EWM30264.1 (nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 491.9 bits (1265), Expect = 2.000e-135
Identity = 237/279 (84.95%), Postives = 249/279 (89.25%), Query Frame = 0

Query:  138 MLPAVLRRLGRSAAAGGLLEKSTRPAAAAATGFHSSPA-VLTNYHPTAQHKDEAGNSVKDAWDFTDENYKRVNMILARYPANYKAAGIIPMLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKWFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMIQLNDDYYECLTPATTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTSLKEPAPTPGFMMRTDLDGKVDPATVKKEMHY 416
            MLPAV  RL RS        K          GFHS  A ++TNYHPTAQHKDE GNSVKDAWDF++ENYKRV+MIL RYP NYKAAGIIP+LDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGK+FIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPM+QLNDDYYECLTPA+TIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKT+LKEPAP PGFMMR DLDG VDPATVK++MHY
Sbjct:    1 MLPAVAGRLSRSILRVPAFNKGHALTRVTGAGFHSGRARLMTNYHPTAQHKDEPGNSVKDAWDFSEENYKRVDMILHRYPTNYKAAGIIPLLDLAQRQNGGWLPVAAMDKVASIVGVVPMRVYEVATFYTMFNREKVGKYFIQLCGTTPCMVNGAEEIRATIEKHLGIKEGETSKDGLFTLREVECLGSCANAPMVQLNDDYYECLTPASTIELLEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTTLKEPAPAPGFMMRKDLDGNVDPATVKRDMHY 279

The following BLAST results are available for this feature:

BLAST of NO02G04060.1 vs.

BLAST of NO02G04060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30264.1	2.000e-135	84.95	nadh dehydrogenase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G04060	NO02G04060	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04060.1	NO02G04060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04060.1.cds1	NO02G04060.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04060.1.cds2	NO02G04060.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04060.1.cds3	NO02G04060.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04060.1.cds4	NO02G04060.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04060.1.cds5	NO02G04060.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1105886..1108400-
coding sequence from alignment at chr2:1105886..1108400-

mRNA sequence

>NO02G04060.1 ID=NO02G04060.1|Name=NO02G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
AGCGCGTGTCTATTTTCACCTGTTTGGGGTATTACAATGAGCAAAGTTAA
AAGAGTTGCCTTTGTTACGCGAATCGAGTTTGCACGCTTGTACAGCAGGG
GATGGAATGGTATTCGGGCTAAAAGACTTTGCCGAAAAATGGAATGCTTG
CTTTATCGCGTGGCGTTGTACTTACTACACCCGTGTGGCACAGGATGTGT
GCGTCGCCCTAGCTCGTATTGATGTGTCACTCCACCCTACTGACCGCATA
AGCAGCACACCCACAGACTCTCCCACAGACCCACGACGTGGTGTTTCGTG
TATCGATGTCGCTGCTATCGTAGCTCGTCGCGTCGTACTTGATCGTGGGC
AGCGTCTTCGTTCAGACCGACATCATCATCCTGCTGATGCATCCAACTCG
TACCATCATACCTCACACACACTCTACATGGACAGACAGGGCAAGGATCT
TCTCCTATTTCCCTCTCCTTTCCTCCTTGCGTGGTTGTCGTTTTCGTCGG
GCCTGACGCTAGTGATCATGCTGCCCGCGGTGCTGCGTCGATTGGGGCGC
TCGGCGGCTGCTGGTGGCCTCCTCGAAAAGAGCACTCGACCAGCTGCAGC
CGCCGCCACTGGCTTTCACAGCAGCCCTGCCGTGCTGACTAACTACCATC
CTACGGCGCAGCACAAGGACGAGGCTGGGAACAGTGTGAAGGACGCCTGG
GATTTTACTGACGAGAATTACAAGCGCGTCAACATGATTTTAGCGCGCTA
CCCGGCCAATTACAAAGCGGCCGGTATCATCCCCATGCTGGACTTGGCGC
AACGGCAAAACGGCGGTTGGCTTCCGGTGGCGGCCATGGATAAAGTAGCT
TCCATTGTCGGCGTGGTGCCGATGCGTGTATATGAGGTGGCGACATTCTA
CACCATGTTCAACCGTGAGAAGGTTGGTAAATGGTTTATTCAGCTGTGTG
GTACCACGCCTTGCATGGTGAATGGAGCCGAGGAGATCCGCGCGACGATT
GAGAAACACCTCGGCATCAAGGAGGGGGAGACGAGCAAAGATGGCTTGTT
CACTTTGAGGGAAGTAGAGTGCCTGGGGTCATGCGCTAATGCGCCCATGA
TTCAGTTGAATGATGACTACTATGAATGCCTCACCCCCGCCACGACCATC
GAGCTACTCGAGGCGTGCAAGAAGGGGAACCCACCCAAGATGGGTCGCTG
GGGCTCGTTGCCGATGAATGGGCAAGTCTCCTGTGAGGGGCCACATGGCA
AGACAAGTCTGAAGGAACCTGCACCCACGCCGGGTTTTATGATGCGCACG
GACCTGGATGGGAAGGTCGACCCGGCGACGGTGAAGAAGGAGATGCATTA
TTAGATTGAGAGGGGGAGTGAAAATGAACAGGGTTCATTCTCCGCGTACA
TGAAAATTTATGCTACATTTTGGTGTGGTGGGCTGTGTGTTCATGGGCGT
GATGGATGGTAGTTTGGACGTTGTCCTTGTACGAGAAGTGAGGGACATGC
GCGTATGTCGGCCCAAGCTATGGCGAGCGGGGGGGGAAGGGATGGGGAGG
GAGAGATAGGACTGAGATAAAAGATGGTTAACAGAGTGAAGTAGAAATAT
TACAAAGATGATGAGACTTCAGTGTCGTATTGGTTCTTGATGACTGGCAA
TTTTACTGTCTTCTCTGT

protein sequence of NO02G04060.1

>NO02G04060.1-protein ID=NO02G04060.1-protein|Name=NO02G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MVFGLKDFAEKWNACFIAWRCTYYTRVAQDVCVALARIDVSLHPTDRISS
TPTDSPTDPRRGVSCIDVAAIVARRVVLDRGQRLRSDRHHHPADASNSYH
HTSHTLYMDRQGKDLLLFPSPFLLAWLSFSSGLTLVIMLPAVLRRLGRSA
AAGGLLEKSTRPAAAAATGFHSSPAVLTNYHPTAQHKDEAGNSVKDAWDF
TDENYKRVNMILARYPANYKAAGIIPMLDLAQRQNGGWLPVAAMDKVASI
VGVVPMRVYEVATFYTMFNREKVGKWFIQLCGTTPCMVNGAEEIRATIEK
HLGIKEGETSKDGLFTLREVECLGSCANAPMIQLNDDYYECLTPATTIEL
LEACKKGNPPKMGRWGSLPMNGQVSCEGPHGKTSLKEPAPTPGFMMRTDL
DGKVDPATVKKEMHY*

mRNA from alignment at chr2:1105886..1108400-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G04060.1 ID=NO02G04060.1|Name=NO02G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2515bp|location=Sequence derived from alignment at chr2:1105886..1108400- (Nannochloropsis oceanica)
AGCGCGTGTCTATTTTCACCTGTTTGGGGTATTACAATGAGCAAAGTTAA
AAGAGTTGCCTTTGTTACGCGAATCGAGTTTGCACGCTTGTACAGCAGGG
GATGGAATGGTATTCGGGCTAAAAGACTTTGCCGAAAAATGGAATGCTTG
CTTTATCGCGTGGCGTTGTACTTACTACACCCGTGTGGCACAGGATGTGT
GCGTCGCCCTAGCTCGTATTGATGTGTCACTCCACCCTACTGACCGCATA
AGCAGCACACCCACAGACTCTCCCACAGACCCACGACGTGGTGTTTCGTG
TATCGATGTCGCTGCTATCGTAGCTCGTCGCGTCGTACTTGATCGTGGGC
AGCGTCTTCGTTCAGACCGACATCATCATCCTGCTGATGCATCCAACTCG
TACCATCATACCTCACACACACTCTACATGGACAGACAGGGCAAGGATCT
TCTCCTATTTCCCTCTCCTTTCCTCCTTGCGTGGTTGTCGTTTTCGTCGG
GCCTGACGCTAGTGATCATGCTGCCCGCGGTGCTGCGTCGATTGGGGCGC
TCGGCGGCTGCTGGTGGCCTCCTCGAAAAGGTACGTCCCCTTCTTTTAAC
TCACGCGTCATCTAGTGCAACGCTTCTGCAGGGTGACGGAATGATTCTCG
TATCAGTTTACTCTGCTCTCGCCCTTCTGTGGCTTGTCGTCGTCCGCGGT
CTGACCTACACACATCCGGCCCTTTCTCTAAGAGCACTCGACCAGCTGCA
GCCGCCGCCACTGGCTTTCACAGCAGCCCTGCCGTGCTGACTAACTACCA
TCCTACGGCGCAGCACAAGGACGAGGCTGGGAACAGTGTGAAGGACGCCT
GGGATTTTACTGACGGTAAGCAACTCTTTTCATTGCGCTGACGGTGTTAT
AGTGTAGTGGGAATCATCGCCTCCTCACTCCCTCCTCCCCCCCTCCCGAT
TTCCCTACTTTACAGAGAATTACAAGCGCGTCAACATGATTTTAGCGCGC
TACCCGGCCAATTACAAAGCGGCCGGTATCATCCCCATGCTGGACTTGGC
GCAACGGCAAAACGGCGGTTGGCTTCCGGTGGCGGCCATGGATAAAGTAG
CTTCCATTGTCGGCGTGGTGCCGATGCGTGTATATGAGGTGGCGACATTC
TACACCATGTTCAACCGGTATGTGCTATTTTAAATTTGTAATCAAGACAA
TTAATATGCATGCTGTGCGCACGTGCATGTATGCTTGTATGTGCTTTTTT
GATTATCTCTCTGGGCTCTGGTGGTGTGAATATGGCTATTGTGGTAACTG
AAGCGGGAAGGGGGGTGGGGATGCATGTGTGTACGAGGTTGCGGTGCTTC
GTGCCATGTGCAACCGGTAGGTAAGACACGGAGCGGTGGTGTCGAAGAGG
ATATGTCAGAGGTGTGCATATTTGTACGCATGCATCCACACATTCGGTGA
GAACATATCGGCATCGCTCACTTATCATCCCTCCTTTCCTCCCTCCCTCC
CTCCCTCCAATCTCCCCCCAGTGAGAAGGTTGGTAAATGGTTTATTCAGC
TGTGTGGTACCACGCCTTGCATGGTGAATGGAGCCGAGGAGATCCGCGCG
ACGATTGAGAAACACCTCGGCATCAAGGAGGGGGAGACGAGCAAAGATGG
CTTGTTCACTTTGAGGGAAGTAGAGTGCCTGGGGTCATGCGCTAATGCGC
CCATGATTCAGTTGAATGATGACTACTATGTGAGTAATATTTTTCTACCT
CTTCGTCCTATTTCTTTCCCTCCCGCTCCCTCCCTCCCTTCCTGAGCGTT
CAAGGACATCTAGACTCGTCATTCCACTTTAGGGCGGGGGGAGGGGAAGG
AAGTGAGGGAGCCAGATTTCTCGCTTTTCCCCTATGACAAAAGCCTTTTT
AAACAAGAAACTATTGCGTTTATCCGCTCATTACTCACTTACTCACCCCC
ACTCACTCACACCTATTTAGGAATGCCTCACCCCCGCCACGACCATCGAG
CTACTCGAGGCGTGCAAGAAGGGGAACCCACCCAAGATGGGTCGCTGGGG
CTCGTTGCCGATGAATGGGCAAGTCTCCTGTGAGGGGCCACATGGCAAGA
CAAGTCTGAAGGAACCTGCACCCACGCCGGGTTTTATGATGCGCACGGAC
CTGGATGGGAAGGTCGACCCGGCGACGGTGAAGAAGGAGATGCATTATTA
GATTGAGAGGGGGAGTGAAAATGAACAGGGTTCATTCTCCGCGTACATGA
AAATTTATGCTACATTTTGGTGTGGTGGGCTGTGTGTTCATGGGCGTGAT
GGATGGTAGTTTGGACGTTGTCCTTGTACGAGAAGTGAGGGACATGCGCG
TATGTCGGCCCAAGCTATGGCGAGCGGGGGGGGAAGGGATGGGGAGGGAG
AGATAGGACTGAGATAAAAGATGGTTAACAGAGTGAAGTAGAAATATTAC
AAAGATGATGAGACTTCAGTGTCGTATTGGTTCTTGATGACTGGCAATTT
TACTGTCTTCTCTGT

Coding sequence (CDS) from alignment at chr2:1105886..1108400-

>NO02G04060.1 ID=NO02G04060.1|Name=NO02G04060.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr2:1105886..1108400- (Nannochloropsis oceanica)
ATGGTATTCGGGCTAAAAGACTTTGCCGAAAAATGGAATGCTTGCTTTAT
CGCGTGGCGTTGTACTTACTACACCCGTGTGGCACAGGATGTGTGCGTCG
CCCTAGCTCGTATTGATGTGTCACTCCACCCTACTGACCGCATAAGCAGC
ACACCCACAGACTCTCCCACAGACCCACGACGTGGTGTTTCGTGTATCGA
TGTCGCTGCTATCGTAGCTCGTCGCGTCGTACTTGATCGTGGGCAGCGTC
TTCGTTCAGACCGACATCATCATCCTGCTGATGCATCCAACTCGTACCAT
CATACCTCACACACACTCTACATGGACAGACAGGGCAAGGATCTTCTCCT
ATTTCCCTCTCCTTTCCTCCTTGCGTGGTTGTCGTTTTCGTCGGGCCTGA
CGCTAGTGATCATGCTGCCCGCGGTGCTGCGTCGATTGGGGCGCTCGGCG
GCTGCTGGTGGCCTCCTCGAAAAGAGCACTCGACCAGCTGCAGCCGCCGC
CACTGGCTTTCACAGCAGCCCTGCCGTGCTGACTAACTACCATCCTACGG
CGCAGCACAAGGACGAGGCTGGGAACAGTGTGAAGGACGCCTGGGATTTT
ACTGACGAGAATTACAAGCGCGTCAACATGATTTTAGCGCGCTACCCGGC
CAATTACAAAGCGGCCGGTATCATCCCCATGCTGGACTTGGCGCAACGGC
AAAACGGCGGTTGGCTTCCGGTGGCGGCCATGGATAAAGTAGCTTCCATT
GTCGGCGTGGTGCCGATGCGTGTATATGAGGTGGCGACATTCTACACCAT
GTTCAACCGTGAGAAGGTTGGTAAATGGTTTATTCAGCTGTGTGGTACCA
CGCCTTGCATGGTGAATGGAGCCGAGGAGATCCGCGCGACGATTGAGAAA
CACCTCGGCATCAAGGAGGGGGAGACGAGCAAAGATGGCTTGTTCACTTT
GAGGGAAGTAGAGTGCCTGGGGTCATGCGCTAATGCGCCCATGATTCAGT
TGAATGATGACTACTATGAATGCCTCACCCCCGCCACGACCATCGAGCTA
CTCGAGGCGTGCAAGAAGGGGAACCCACCCAAGATGGGTCGCTGGGGCTC
GTTGCCGATGAATGGGCAAGTCTCCTGTGAGGGGCCACATGGCAAGACAA
GTCTGAAGGAACCTGCACCCACGCCGGGTTTTATGATGCGCACGGACCTG
GATGGGAAGGTCGACCCGGCGACGGTGAAGAAGGAGATGCATTATTAG

Synonyms

Publications