NO02G04020.1, NO02G04020.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04020.1
Unique Name	NO02G04020.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2067
Alignment location	chr2:1094270..1096776 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1094270..1096776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G04020.1 vs.
Match: EWM30270.1 (e3 ubiquitin-protein ligase rnf14 [Nannochloropsis gaditana])

HSP 1 Score: 813.9 bits (2101), Expect = 3.700e-232
Identity = 433/656 (66.01%), Postives = 488/656 (74.39%), Query Frame = 0

Query:   31 SLPDPPSLAYLQSSSSSSSSSRVMTPSSLSLPYCGDLDAARKARDSPAVRLLTQYRDQQKSGSSSPLTLSRNSSTGSPIRTQTAQAAPSSAVSSLSSLGRRLLELGFSGSSSSSRRSSSNKAVATKGETPAEEGSRSVSHYHHQQQQQHYGKGSNDSSTFPKRFVSGAGDAGSPGGANVKNIHSHHQPPSSPTPQSYFRRVYAKEAAAGIGPVGEGSGEERRHPCMSAACQQQHTHGHASAGISAGFHLQHPQEHCKERTSCNGLLAAAAAATEAEALSREEGEEGGGEAMIEDPILMMCIPASQAYTVACRCSHAFSTETLYGCIKTALIDDLIPACPLANHPEPAQRCNHLLAQEEVEQVLNRHAPPSQLPSEDRRLWRFRRGRLVDGGLGWVSEKVTEAFLRKGKIAAGCIECPNGSCSCWVEPTRPLEKQRVDCPKCLMTFCTLCKRPYHFRCSCDEVMTITKQWLEWQQHGREPYLTKMAKEDSSYQAALDVFNERRAAHVQEVHTAEQNWGLLVADENYKASRCRRCPYCNRVIERIDGCDTMVCGQNAHGGNIQNGCGVAFDWNEALCYSADIGEKRSIVPFEEVPPSEIARVEHQIMDGTPVKCDICSAKITGPLAMCINCPSFSCCIRCQNKHTRGHVLRLYMDGGG 687
            S  DPP+L       S SSSS +MT SS +LPYCGDLDAARKARDSPAVRLLTQYRDQQ+S  SSPL+LSRNSS G+P+  Q    AP  A SS SSL RRLLELGF  +    R   S+ A   + +  A  G    +        +H  +   ++     R VSGAG+ GSP    V+   SHH   SS       + +Y  EAA G+   GEG  E    P         +  G  ++        + P     +  +   ++ AAAAA  A A+ ++  +    E M+ED +LM C+P S AY + C+C+HAFSTETLYGCIK ALIDDLIPACPLANHP+  QRCN+LL Q+EVE VLNRHAPPSQLP++DR+L  FRRGRLVDGGLGWVSE+VTEAFLRKGKIAAGCIECPNG CS WVEPTRPLEKQRVDCPKCLM FC+LCKRPYHFRCSCDEVMTITKQWLEWQQHGR PYLTKMA+EDSSYQAALDVF  RRAAHVQEV TAEQNWGLLVADENYKASRC+RCP+CNRVIER+DGCDTMVCGQNAHGGNIQNGCG AFDWN+AL Y ADIGEKRSIVPF+EVPP+EIARVEHQIMDGTPVKCD+CSAKI GPLAMCINCPSFSCCIRCQNKHTRGHVLRLYMDG G
Sbjct:   31 SFRDPPAL---MPCGSVSSSSHIMTNSSAALPYCGDLDAARKARDSPAVRLLTQYRDQQRSADSSPLSLSRNSSAGNPMDGQ----APPPAASSFSSLTRRLLELGFKATMRGKRNQKSSDASDAERQNEALAGPLQAAAEQSHSVSRHQPQFDLNTEKGAARAVSGAGETGSP---VVRLNQSHH---SSSGRGMLCQTLY--EAAGGV--TGEGKQESDNWP------PSYYLRGGETS-------KRLPTTFIDKSNTGQTIVPAAAAAIGACAVYKDSPQHMVEEEMLEDLVLMTCVPTSLAYRLDCKCAHAFSTETLYGCIKAALIDDLIPACPLANHPDAPQRCNYLLTQKEVEHVLNRHAPPSQLPAQDRKLLCFRRGRLVDGGLGWVSERVTEAFLRKGKIAAGCIECPNGRCSYWVEPTRPLEKQRVDCPKCLMAFCSLCKRPYHFRCSCDEVMTITKQWLEWQQHGRAPYLTKMAREDSSYQAALDVFKSRRAAHVQEVRTAEQNWGLLVADENYKASRCKRCPHCNRVIERVDGCDTMVCGQNAHGGNIQNGCGQAFDWNDALLYVADIGEKRSIVPFQEVPPAEIARVEHQIMDGTPVKCDVCSAKIMGPLAMCINCPSFSCCIRCQNKHTRGHVLRLYMDGTG 656

The following BLAST results are available for this feature:

BLAST of NO02G04020.1 vs.

BLAST of NO02G04020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30270.1	3.700e-232	66.01	e3 ubiquitin-protein ligase rnf14 [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G04020	NO02G04020	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04020.1	NO02G04020.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04020.1.cds1	NO02G04020.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G04020.1.cds2	NO02G04020.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1094270..1096776-
coding sequence from alignment at chr2:1094270..1096776-

mRNA sequence

>NO02G04020.1 ID=NO02G04020.1|Name=NO02G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp
ATGGAGAAATCTGGTGAAATTCAGGAAAATGTGAGTATGGGCTCCATCTC
GTCAAGACCTTTCGCGTCTGTCTCCTCGGCCTCTGTATCGTCCTTGCCGG
ACCCGCCATCGCTGGCATACCTTCAGTCCTCTTCCTCCTCTTCCTCCTCC
TCCCGTGTTATGACACCTTCGTCCTTGTCCCTTCCATACTGTGGGGACCT
AGACGCAGCCCGTAAGGCCCGAGATTCACCTGCCGTCAGGCTTCTAACTC
AGTATCGCGACCAGCAAAAATCCGGTTCCTCTTCTCCCTTGACTCTAAGT
CGGAATTCTAGCACAGGTAGTCCCATTAGAACTCAAACTGCGCAAGCCGC
GCCATCATCAGCGGTGTCTTCTTTGTCTTCGCTCGGCCGGCGGCTGCTCG
AGTTGGGCTTCAGCGGTAGTAGCAGCAGCAGCCGCCGCAGCAGCAGCAAT
AAAGCTGTCGCCACGAAGGGAGAAACCCCAGCGGAGGAAGGAAGTCGGTC
TGTGTCTCACTATCATCACCAACAGCAGCAGCAGCATTACGGCAAGGGCA
GTAATGACAGTAGCACGTTCCCAAAACGCTTTGTGTCTGGCGCGGGCGAT
GCAGGCAGCCCTGGTGGCGCCAACGTTAAGAACATTCATAGCCACCATCA
GCCCCCATCGTCGCCGACACCTCAGTCCTATTTCAGGAGAGTATACGCCA
AAGAAGCCGCAGCAGGGATTGGGCCTGTAGGGGAGGGCTCCGGAGAGGAG
CGGCGACACCCATGTATGAGCGCTGCTTGTCAGCAGCAGCACACGCACGG
ACACGCCTCTGCAGGGATTAGCGCTGGCTTCCATCTGCAGCATCCTCAAG
AGCATTGCAAAGAAAGAACATCATGTAATGGGCTGCTGGCAGCTGCAGCA
GCGGCGACGGAGGCAGAGGCACTTTCGAGGGAAGAAGGGGAGGAGGGAGG
GGGGGAGGCGATGATCGAGGATCCAATCTTGATGATGTGCATCCCGGCTT
CGCAAGCGTATACGGTGGCTTGTCGGTGCTCCCATGCTTTTAGCACGGAA
ACACTGTATGGGTGTATCAAGACTGCCTTGATCGACGACCTGATTCCTGC
TTGTCCTCTCGCGAATCACCCCGAGCCCGCTCAACGGTGCAACCACCTGC
TGGCACAAGAAGAAGTCGAACAGGTTCTGAATCGCCATGCGCCCCCCTCT
CAGCTGCCGTCGGAAGATCGGAGGCTGTGGCGGTTTCGGCGGGGTCGGCT
GGTGGACGGAGGGTTGGGTTGGGTTAGCGAGAAAGTGACCGAGGCGTTTC
TGAGGAAAGGGAAGATAGCGGCGGGCTGTATTGAGTGTCCAAATGGTAGT
TGTAGCTGCTGGGTTGAGCCCACAAGGCCCTTAGAGAAGCAAAGGGTGGA
CTGCCCGAAGTGCTTAATGACGTTTTGTACCTTGTGCAAGCGTCCATATC
ACTTTAGATGTTCCTGTGATGAAGTCATGACAATCACTAAGCAATGGTTG
GAGTGGCAGCAGCACGGCCGGGAGCCATACCTCACCAAGATGGCAAAGGA
AGATTCGAGCTACCAGGCAGCACTGGATGTATTCAATGAACGGAGGGCTG
CACACGTGCAGGAGGTGCACACGGCGGAGCAAAACTGGGGTTTGTTGGTC
GCGGATGAGAACTACAAGGCGAGCCGATGTAGGAGATGTCCGTACTGTAA
TCGCGTGATTGAACGGATTGATGGATGTGATACCATGGTGTGTGGTCAGA
ATGCGCATGGCGGGAACATTCAAAATGGGTGTGGAGTGGCTTTTGATTGG
AATGAGGCACTGTGTTATAGTGCTGACATAGGGGAGAAAAGATCAATTGT
TCCTTTTGAGGAGGTGCCGCCGTCCGAAATTGCGCGGGTGGAGCACCAGA
TCATGGACGGGACGCCTGTGAAGTGTGATATTTGCTCGGCCAAGATCACT
GGGCCTTTAGCTATGTGTATCAATTGTCCATCGTTTTCATGTTGTATTCG
GTGTCAGAATAAGCATACGCGTGGACACGTGTTGAGGCTTTACATGGACG
GGGGGGGGGAAAGGTAG

protein sequence of NO02G04020.1

>NO02G04020.1-protein ID=NO02G04020.1-protein|Name=NO02G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=689bp
MEKSGEIQENVSMGSISSRPFASVSSASVSSLPDPPSLAYLQSSSSSSSS
SRVMTPSSLSLPYCGDLDAARKARDSPAVRLLTQYRDQQKSGSSSPLTLS
RNSSTGSPIRTQTAQAAPSSAVSSLSSLGRRLLELGFSGSSSSSRRSSSN
KAVATKGETPAEEGSRSVSHYHHQQQQQHYGKGSNDSSTFPKRFVSGAGD
AGSPGGANVKNIHSHHQPPSSPTPQSYFRRVYAKEAAAGIGPVGEGSGEE
RRHPCMSAACQQQHTHGHASAGISAGFHLQHPQEHCKERTSCNGLLAAAA
AATEAEALSREEGEEGGGEAMIEDPILMMCIPASQAYTVACRCSHAFSTE
TLYGCIKTALIDDLIPACPLANHPEPAQRCNHLLAQEEVEQVLNRHAPPS
QLPSEDRRLWRFRRGRLVDGGLGWVSEKVTEAFLRKGKIAAGCIECPNGS
CSCWVEPTRPLEKQRVDCPKCLMTFCTLCKRPYHFRCSCDEVMTITKQWL
EWQQHGREPYLTKMAKEDSSYQAALDVFNERRAAHVQEVHTAEQNWGLLV
ADENYKASRCRRCPYCNRVIERIDGCDTMVCGQNAHGGNIQNGCGVAFDW
NEALCYSADIGEKRSIVPFEEVPPSEIARVEHQIMDGTPVKCDICSAKIT
GPLAMCINCPSFSCCIRCQNKHTRGHVLRLYMDGGGER*

mRNA from alignment at chr2:1094270..1096776-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G04020.1 ID=NO02G04020.1|Name=NO02G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2507bp|location=Sequence derived from alignment at chr2:1094270..1096776- (Nannochloropsis oceanica)
ATGGAGAAATCTGGTGAAATTCAGGAAAATGTGAGTATGGGCTCCATCTC
GTCAAGACCTTTCGCGTCTGTCTCCTCGGCCTCTGTATCGTCCTTGCCGG
ACCCGCCATCGCTGGCATACCTTCAGTCCTCTTCCTCCTCTTCCTCCTCC
TCCCGTGTTATGACACCTTCGTCCTTGTCCCTTCCATACTGTGGGGACCT
AGACGCAGCCCGTAAGGCCCGAGATTCACCTGCCGTCAGGTGAGTTTGCA
ATATGAAAGGGATTTTGTCGTATATATGTCATCGGAAGGCCGCCGCTCTG
ATTGATGGCTATTTTCATTGCGTTTATTTCGCTCGAAAGCTCCATGCTCA
ATGCCTGCATGTGTGTGTCTGGTCAATGAATCGACCGTCAGAGTATGATA
ACGATATTGCTGTGCTCCTATTTGGCACGAGAGAGAGGGGCGCAGAATGA
TGACTACCTGTTAGCCCCCCTCTAACAGGAGAGTGAGGGTTTCGTATAGC
AGCAGTAGAGAACGAATGTGACCAACAACGGCTCGAGCAGATTATTTCCT
GTCTGTCTATGCTCAGGAAGGGAACGGGCAAAACAGGGCGACGTTGAGCG
TGGCATACACGTAAAAATAGGCTGATCAAAAAAGAAATTCTCATCCATCC
TCCTCCTTTTCCCATCCAAACTAAAAAAGGCTTCTAACTCAGTATCGCGA
CCAGCAAAAATCCGGTTCCTCTTCTCCCTTGACTCTAAGTCGGAATTCTA
GCACAGGTAGTCCCATTAGAACTCAAACTGCGCAAGCCGCGCCATCATCA
GCGGTGTCTTCTTTGTCTTCGCTCGGCCGGCGGCTGCTCGAGTTGGGCTT
CAGCGGTAGTAGCAGCAGCAGCCGCCGCAGCAGCAGCAATAAAGCTGTCG
CCACGAAGGGAGAAACCCCAGCGGAGGAAGGAAGTCGGTCTGTGTCTCAC
TATCATCACCAACAGCAGCAGCAGCATTACGGCAAGGGCAGTAATGACAG
TAGCACGTTCCCAAAACGCTTTGTGTCTGGCGCGGGCGATGCAGGCAGCC
CTGGTGGCGCCAACGTTAAGAACATTCATAGCCACCATCAGCCCCCATCG
TCGCCGACACCTCAGTCCTATTTCAGGAGAGTATACGCCAAAGAAGCCGC
AGCAGGGATTGGGCCTGTAGGGGAGGGCTCCGGAGAGGAGCGGCGACACC
CATGTATGAGCGCTGCTTGTCAGCAGCAGCACACGCACGGACACGCCTCT
GCAGGGATTAGCGCTGGCTTCCATCTGCAGCATCCTCAAGAGCATTGCAA
AGAAAGAACATCATGTAATGGGCTGCTGGCAGCTGCAGCAGCGGCGACGG
AGGCAGAGGCACTTTCGAGGGAAGAAGGGGAGGAGGGAGGGGGGGAGGCG
ATGATCGAGGATCCAATCTTGATGATGTGCATCCCGGCTTCGCAAGCGTA
TACGGTGGCTTGTCGGTGCTCCCATGCTTTTAGCACGGAAACACTGTATG
GGTGTATCAAGACTGCCTTGATCGACGACCTGATTCCTGCTTGTCCTCTC
GCGAATCACCCCGAGCCCGCTCAACGGTGCAACCACCTGCTGGCACAAGA
AGAAGTCGAACAGGTTCTGAATCGCCATGCGCCCCCCTCTCAGCTGCCGT
CGGAAGATCGGAGGCTGTGGCGGTTTCGGCGGGGTCGGCTGGTGGACGGA
GGGTTGGGTTGGGTTAGCGAGAAAGTGACCGAGGCGTTTCTGAGGAAAGG
GAAGATAGCGGCGGGCTGTATTGAGTGTCCAAATGGTAGTTGTAGCTGCT
GGGTTGAGCCCACAAGGCCCTTAGAGAAGCAAAGGGTGGACTGCCCGAAG
TGCTTAATGACGTTTTGTACCTTGTGCAAGCGTCCATATCACTTTAGATG
TTCCTGTGATGAAGTCATGACAATCACTAAGCAATGGTTGGAGTGGCAGC
AGCACGGCCGGGAGCCATACCTCACCAAGATGGCAAAGGAAGATTCGAGC
TACCAGGCAGCACTGGATGTATTCAATGAACGGAGGGCTGCACACGTGCA
GGAGGTGCACACGGCGGAGCAAAACTGGGGTTTGTTGGTCGCGGATGAGA
ACTACAAGGCGAGCCGATGTAGGAGATGTCCGTACTGTAATCGCGTGATT
GAACGGATTGATGGATGTGATACCATGGTGTGTGGTCAGAATGCGCATGG
CGGGAACATTCAAAATGGGTGTGGAGTGGCTTTTGATTGGAATGAGGCAC
TGTGTTATAGTGCTGACATAGGGGAGAAAAGATCAATTGTTCCTTTTGAG
GAGGTGCCGCCGTCCGAAATTGCGCGGGTGGAGCACCAGATCATGGACGG
GACGCCTGTGAAGTGTGATATTTGCTCGGCCAAGATCACTGGGCCTTTAG
CTATGTGTATCAATTGTCCATCGTTTTCATGTTGTATTCGGTGTCAGAAT
AAGCATACGCGTGGACACGTGTTGAGGCTTTACATGGACGGGGGGGGGGA
AAGGTAG

Coding sequence (CDS) from alignment at chr2:1094270..1096776-

>NO02G04020.1 ID=NO02G04020.1|Name=NO02G04020.1|organism=Nannochloropsis oceanica|type=CDS|length=2067bp|location=Sequence derived from alignment at chr2:1094270..1096776- (Nannochloropsis oceanica)
ATGGAGAAATCTGGTGAAATTCAGGAAAATGTGAGTATGGGCTCCATCTC
GTCAAGACCTTTCGCGTCTGTCTCCTCGGCCTCTGTATCGTCCTTGCCGG
ACCCGCCATCGCTGGCATACCTTCAGTCCTCTTCCTCCTCTTCCTCCTCC
TCCCGTGTTATGACACCTTCGTCCTTGTCCCTTCCATACTGTGGGGACCT
AGACGCAGCCCGTAAGGCCCGAGATTCACCTGCCGTCAGGCTTCTAACTC
AGTATCGCGACCAGCAAAAATCCGGTTCCTCTTCTCCCTTGACTCTAAGT
CGGAATTCTAGCACAGGTAGTCCCATTAGAACTCAAACTGCGCAAGCCGC
GCCATCATCAGCGGTGTCTTCTTTGTCTTCGCTCGGCCGGCGGCTGCTCG
AGTTGGGCTTCAGCGGTAGTAGCAGCAGCAGCCGCCGCAGCAGCAGCAAT
AAAGCTGTCGCCACGAAGGGAGAAACCCCAGCGGAGGAAGGAAGTCGGTC
TGTGTCTCACTATCATCACCAACAGCAGCAGCAGCATTACGGCAAGGGCA
GTAATGACAGTAGCACGTTCCCAAAACGCTTTGTGTCTGGCGCGGGCGAT
GCAGGCAGCCCTGGTGGCGCCAACGTTAAGAACATTCATAGCCACCATCA
GCCCCCATCGTCGCCGACACCTCAGTCCTATTTCAGGAGAGTATACGCCA
AAGAAGCCGCAGCAGGGATTGGGCCTGTAGGGGAGGGCTCCGGAGAGGAG
CGGCGACACCCATGTATGAGCGCTGCTTGTCAGCAGCAGCACACGCACGG
ACACGCCTCTGCAGGGATTAGCGCTGGCTTCCATCTGCAGCATCCTCAAG
AGCATTGCAAAGAAAGAACATCATGTAATGGGCTGCTGGCAGCTGCAGCA
GCGGCGACGGAGGCAGAGGCACTTTCGAGGGAAGAAGGGGAGGAGGGAGG
GGGGGAGGCGATGATCGAGGATCCAATCTTGATGATGTGCATCCCGGCTT
CGCAAGCGTATACGGTGGCTTGTCGGTGCTCCCATGCTTTTAGCACGGAA
ACACTGTATGGGTGTATCAAGACTGCCTTGATCGACGACCTGATTCCTGC
TTGTCCTCTCGCGAATCACCCCGAGCCCGCTCAACGGTGCAACCACCTGC
TGGCACAAGAAGAAGTCGAACAGGTTCTGAATCGCCATGCGCCCCCCTCT
CAGCTGCCGTCGGAAGATCGGAGGCTGTGGCGGTTTCGGCGGGGTCGGCT
GGTGGACGGAGGGTTGGGTTGGGTTAGCGAGAAAGTGACCGAGGCGTTTC
TGAGGAAAGGGAAGATAGCGGCGGGCTGTATTGAGTGTCCAAATGGTAGT
TGTAGCTGCTGGGTTGAGCCCACAAGGCCCTTAGAGAAGCAAAGGGTGGA
CTGCCCGAAGTGCTTAATGACGTTTTGTACCTTGTGCAAGCGTCCATATC
ACTTTAGATGTTCCTGTGATGAAGTCATGACAATCACTAAGCAATGGTTG
GAGTGGCAGCAGCACGGCCGGGAGCCATACCTCACCAAGATGGCAAAGGA
AGATTCGAGCTACCAGGCAGCACTGGATGTATTCAATGAACGGAGGGCTG
CACACGTGCAGGAGGTGCACACGGCGGAGCAAAACTGGGGTTTGTTGGTC
GCGGATGAGAACTACAAGGCGAGCCGATGTAGGAGATGTCCGTACTGTAA
TCGCGTGATTGAACGGATTGATGGATGTGATACCATGGTGTGTGGTCAGA
ATGCGCATGGCGGGAACATTCAAAATGGGTGTGGAGTGGCTTTTGATTGG
AATGAGGCACTGTGTTATAGTGCTGACATAGGGGAGAAAAGATCAATTGT
TCCTTTTGAGGAGGTGCCGCCGTCCGAAATTGCGCGGGTGGAGCACCAGA
TCATGGACGGGACGCCTGTGAAGTGTGATATTTGCTCGGCCAAGATCACT
GGGCCTTTAGCTATGTGTATCAATTGTCCATCGTTTTCATGTTGTATTCG
GTGTCAGAATAAGCATACGCGTGGACACGTGTTGAGGCTTTACATGGACG
GGGGGGGGGAAAGGTAG

Synonyms

Publications