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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1088668..1091787 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03990.1 vs.
Match: EWM30326.1 (ubiquitin-conjugating enzyme catalytic domain protein [Nannochloropsis gaditana]) HSP 1 Score: 528.9 bits (1361), Expect = 2.000e-146 Identity = 320/565 (56.64%), Postives = 409/565 (72.39%), Query Frame = 0
Query: 1 MLRGLALPSRREVGPCLRTAETLGGLRTMRQGRRGENRDVQEFLEEAVTPRGQFGAGAAGAGAGRGSGSYERFIKAHKETVLTEEDKRFKTWSSWKDQLEDFKDDGQEDLTAAEEGYLGTV--MESEGFGDNENNGD--KAQGRKGRAGGGRGDDAGGDDSGSYFDWNEESLFIPNLPERNEEEGGFTTDKITGKDDVQLRVNKLLWRRLKLKARDMDLHVPSAFRRVKIVQKAMAEAREKMARD----PRKEERTMSVEKKEGKAVVTSLREDKEKEVQEGDDGGVGGVTENDRQSNNMTATSAAAAAADPDIKEVARLNRARTVEAIEAEIGRLLVEGKMDLQMAQDERRARKKAAKARSVSKGEWDGDEEMGEEEWDDDEEEDDDEEETAGMDDWSKIHMQDLEEALGEEIPTMDVHEEGFEAFREYAEQLIESGGVIEYRSTMADKYDREVSLPLPLATGRALKQALRRDQTALHETTLAP---------PAPMSQSSSSPPDYDAAAAFAWLALNKNLSMGDTTRTELSEAMASTLQRLREKPGRLERARSRAKAAAASG 549
MLRG++LP + GP TA +LGGLR +RQG RG ++DVQEFLEEAVTPRG G + GAGRGSGSYERFIK +KETVLTEEDKRFKTWS+WKDQLEDF++DGQEDL+ EEGYLG++ MES G G + G +GR R G D+ GG+D GSYFDW E SLFIP+L R +EGG +D+I +DD+QLR+NKLLWRRLKL+ARD+D HVP A+RR + VQ+AMAEAR + AR P + + V+ G+ + ++RE +E G G G V E ++ + A A DPDI+ V RLN+ART+EAIE EIGRL+VEGK+D++M +++ RAR+ A+AR +S GE+D E++ + ++EE D +E + + MDDW++IH+QDLEEA+GEE+PT+D EEGFEAFREYAEQLIE+GGVIEYRST A KYDRE++LP PLATGRAL+QALRRD+TA+ + + + APMS S D++A+AA AWLALNKN+SMGDTTR ELS A+A+TLQRL+EKPGRLER R+ K A+ G
Sbjct: 20 MLRGISLPGLSDRGPLRWTAASLGGLRNIRQGSRGGDKDVQEFLEEAVTPRGAQGPRS---GAGRGSGSYERFIKTYKETVLTEEDKRFKTWSNWKDQLEDFENDGQEDLSGGEEGYLGSMVDMESSGRGAKKGRGRGRSVRGRSVRRSRGGRDEEGGEDVGSYFDWTEGSLFIPDLVVREGDEGGTVSDRIRVEDDLQLRLNKLLWRRLKLRARDLDQHVPRAYRRGRAVQRAMAEARAREARAGTGIPGAKGAGLEVQSGTGEDGLGTVRETRETS---GGPGSRGQVGEGLQEGSPEPVAGGVAPALDPDIQVVKRLNQARTLEAIEDEIGRLMVEGKVDVEMEEEQIRARRLQARARRMSSGEYDHGEDI--DGGGEEEEGDGEERQGSKMDDWTRIHVQDLEEAVGEEVPTLDADEEGFEAFREYAEQLIEAGGVIEYRSTRAGKYDREMALPAPLATGRALEQALRRDRTAVEKVSASKHRFGGKEKGTAPMSAS-----DFEASAACAWLALNKNVSMGDTTRMELSGALATTLQRLQEKPGRLERVRAHDKKQASRG 571
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03990.1 ID=NO02G03990.1|Name=NO02G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2883bp CTCGTAATGGTAATTAAAACCCTAAAAAAGTAAAAAGAGCAAAAAACTTA CATAACTTTCTGTTTATTCCCCACAAGCACGTACATTTAGTTGCTGAAGC GCAATCCCCCCATCCCAGATTTGATGACTAACAGATTGTAAGACTCGACG AAAATGAGGATATATCAGAGGGCTGAATTTTGCCCGACACGTAGTCCGCA GCAAGGAGATCTGTATCAAGTCGAGCACACAGACAAGCGAGTAAGGGCCA TCTGGGGTTTCTTTGCTTGTCCTCCTTAAATTTAAAGTCCAGTAGTACCT GAAGATAGCACACAAACCACACGAGTTTCTAAGATTTGATAATGTAGAAT ATCAGCTGAAATTGTTATTATTGTGAAGAAAACCTCAAGCATTTTTTTTC CCATCGTGAAGCTGTCGAAATTGGTGCTGCGGATGAAGCCTACCCTCATC CAACCCCCTGCTCTCATCGTACATCAACCGGTAGGATCCCATATCAGCTA ACAGTGTCCTAATCAAGCCCATTTCGAGATTGAGCAGAAGTACATAGCTA AACATCTATGATTGTAGGTACAGCATGAAAAGGGATTGTTGTGTGACTTG GGTGGGCGTCCCTCCTGCCTGCAAGAGGCATAGCTCTGCTCTTTTCTCCA TCTTCGCCTTACTGACTCCACGAGCATGATATTTTAGCGTGAGGGAAATA GAATCCCTTGTCAGCGGTGACAGATTACTAACCTCCCAGAGGCCCACTTC GCAATTCACCTTTTTTGCACTGACCACTACTCAATCAAGGGGAGGCATCA CAAAAATAGCCCCACACGTATCAAAACTAAATCGTTCATAAGCATCCACA CTTCAACTGTTGAGGGAATTAGTCATACCAAGTAAAAACGCAGTGGCGTG CCGTTGCCGTTAGCGTGGTTGAGTGCAATGCACCGATATCCACTTGCTTG TGCTTGTCTGTCCCTCCCCTCTGTTTGGTGACCTTAACCACAACTTGCGC CTGCAGCTTGTCCGTATATCCCCTGTTTCCTACGGTCACATTGACTTGTT GGTGGGGTTGGCTGAAAGGGAAACATTTGGCTCCTTGCTCGACAACACTC CTTCGTCATCATTAACCGCCCCACACAACACAGAGAGCAAGCCATGCTGC GCGGGTTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCTTGCCTTCGGACA GCAGAAACGCTGGGTGGTCTGCGCACCATGCGACAAGGCCGACGGGGCGA GAACCGGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTACGCCGCGAGGGC AGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGAGGTTCTGGCTCC TATGAGCGGTTCATCAAGGCACACAAGGAGACAGTGCTGACCGAGGAGGA CAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGACCAGCTGGAGGACTTCA AAGACGATGGACAAGAAGATTTGACCGCAGCTGAAGAAGGATACCTAGGT ACGGTGATGGAAAGCGAAGGCTTTGGCGACAACGAGAATAATGGAGATAA GGCCCAGGGCCGCAAAGGACGAGCCGGAGGAGGCCGTGGTGATGACGCGG GAGGGGATGACTCGGGGAGTTACTTCGATTGGAACGAAGAATCTTTGTTC ATCCCCAACTTGCCAGAAAGGAATGAGGAGGAGGGAGGTTTTACCACGGA TAAGATCACGGGAAAGGATGACGTGCAATTGAGGGTGAACAAGTTGTTGT GGCGACGGTTGAAGCTCAAGGCGAGGGATATGGATCTGCATGTCCCCTCG GCCTTTCGGAGGGTTAAAATTGTGCAGAAGGCCATGGCCGAAGCAAGGGA AAAGATGGCACGAGATCCGAGGAAGGAGGAAAGGACGATGAGCGTGGAGA AGAAGGAGGGGAAGGCGGTCGTGACGTCTTTACGAGAAGACAAGGAGAAG GAAGTGCAGGAGGGCGACGATGGGGGGGTAGGGGGAGTTACGGAGAATGA CAGACAATCAAATAATATGACGGCGACGAGCGCTGCTGCTGCGGCTGCTG ATCCTGATATCAAGGAGGTGGCGAGGTTGAATCGGGCCAGAACCGTGGAG GCGATCGAGGCCGAGATTGGACGGCTGTTGGTGGAGGGAAAGATGGACTT GCAGATGGCGCAGGATGAGAGGAGGGCTAGAAAAAAAGCGGCCAAGGCAA GGAGTGTGAGTAAAGGGGAGTGGGATGGGGACGAGGAAATGGGGGAGGAG GAATGGGACGATGATGAGGAGGAAGATGATGATGAGGAGGAAACGGCGGG GATGGACGATTGGTCCAAGATTCATATGCAGGACTTGGAGGAGGCCTTGG GTGAGGAGATCCCGACTATGGATGTGCATGAGGAGGGGTTTGAGGCGTTT CGGGAGTATGCGGAGCAGTTGATTGAGTCAGGAGGGGTGATTGAGTATCG GTCTACTATGGCGGATAAATACGATAGGGAAGTCTCCTTGCCCTTGCCAC TGGCGACAGGACGGGCTCTGAAGCAGGCCTTGCGGAGGGATCAGACGGCG CTGCATGAGACCACTCTTGCTCCACCTGCGCCTATGTCTCAGTCTTCGTC CTCGCCACCGGATTACGACGCCGCTGCTGCGTTTGCTTGGTTGGCACTCA ATAAAAACCTCAGCATGGGGGATACGACCAGGACGGAACTCAGCGAGGCC ATGGCAAGTACTCTACAGCGTCTTCGGGAGAAGCCAGGGAGGCTTGAACG GGCGCGAAGTCGCGCCAAAGCCGCAGCGGCGAGTGGGGTCAAGACGGCGG GGGCGGGGTTGGATGCGGGGGAGGGAGGAGGGGGACGAGGCGGTGGGGGT GGCAAAGGGGGTGGCAAGATGAAGGCCAAGTAG back to topprotein sequence of NO02G03990.1 >NO02G03990.1-protein ID=NO02G03990.1-protein|Name=NO02G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp MLRGLALPSRREVGPCLRTAETLGGLRTMRQGRRGENRDVQEFLEEAVTP RGQFGAGAAGAGAGRGSGSYERFIKAHKETVLTEEDKRFKTWSSWKDQLE DFKDDGQEDLTAAEEGYLGTVMESEGFGDNENNGDKAQGRKGRAGGGRGD DAGGDDSGSYFDWNEESLFIPNLPERNEEEGGFTTDKITGKDDVQLRVNK LLWRRLKLKARDMDLHVPSAFRRVKIVQKAMAEAREKMARDPRKEERTMS VEKKEGKAVVTSLREDKEKEVQEGDDGGVGGVTENDRQSNNMTATSAAAA AADPDIKEVARLNRARTVEAIEAEIGRLLVEGKMDLQMAQDERRARKKAA KARSVSKGEWDGDEEMGEEEWDDDEEEDDDEEETAGMDDWSKIHMQDLEE ALGEEIPTMDVHEEGFEAFREYAEQLIESGGVIEYRSTMADKYDREVSLP LPLATGRALKQALRRDQTALHETTLAPPAPMSQSSSSPPDYDAAAAFAWL ALNKNLSMGDTTRTELSEAMASTLQRLREKPGRLERARSRAKAAAASGVK TAGAGLDAGEGGGGRGGGGGKGGGKMKAK* back to topmRNA from alignment at chr2:1088668..1091787+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03990.1 ID=NO02G03990.1|Name=NO02G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=3120bp|location=Sequence derived from alignment at chr2:1088668..1091787+ (Nannochloropsis oceanica) CTCGTAATGGTAATTAAAACCCTAAAAAAGTAAAAAGAGCAAAAAACTTA
CATAACTTTCTGTTTATTCCCCACAAGCACGTACATTTAGTTGCTGAAGC
GCAATCCCCCCATCCCAGATTTGATGACTAACAGATTGTAAGACTCGACG
AAAATGAGGATATATCAGAGGGCTGAATTTTGCCCGACACGTAGTCCGCA
GCAAGGAGATCTGTATCAAGTCGAGCACACAGACAAGCGAGTAAGGGCCA
TCTGGGGTTTCTTTGCTTGTCCTCCTTAAATTTAAAGTCCAGTAGTACCT
GAAGATAGCACACAAACCACACGAGTTTCTAAGATTTGATAATGTAGAAT
ATCAGCTGAAATTGTTATTATTGTGAAGAAAACCTCAAGCATTTTTTTTC
CCATCGTGAAGCTGTCGAAATTGGTGCTGCGGATGAAGCCTACCCTCATC
CAACCCCCTGCTCTCATCGTACATCAACCGGTAGGATCCCATATCAGCTA
ACAGTGTCCTAATCAAGCCCATTTCGAGATTGAGCAGAAGTACATAGCTA
AACATCTATGATTGTAGGTACAGCATGAAAAGGGATTGTTGTGTGACTTG
GGTGGGCGTCCCTCCTGCCTGCAAGAGGCATAGCTCTGCTCTTTTCTCCA
TCTTCGCCTTACTGACTCCACGAGCATGATATTTTAGCGTGAGGGAAATA
GAATCCCTTGTCAGCGGTGACAGATTACTAACCTCCCAGAGGCCCACTTC
GCAATTCACCTTTTTTGCACTGACCACTACTCAATCAAGGGGAGGCATCA
CAAAAATAGCCCCACACGTATCAAAACTAAATCGTTCATAAGCATCCACA
CTTCAACTGTTGAGGGAATTAGTCATACCAAGTAAAAACGCAGTGGCGTG
CCGTTGCCGTTAGCGTGGTTGAGTGCAATGCACCGATATCCACTTGCTTG
TGCTTGTCTGTCCCTCCCCTCTGTTTGGTGACCTTAACCACAACTTGCGC
CTGCAGCTTGTCCGTATATCCCCTGTTTCCTACGGTCACATTGACTTGTT
GGTGGGGTTGGCTGAAAGGGAAACATTTGGCTCCTTGCTCGACAACACTC
CTTCGTCATCATTAACCGCCCCACACAACACAGAGAGCAAGCCATGCTGC
GCGGGTTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCTTGCCTTCGGACA
GCAGGTATATGGACTTCTACCGGTGTAATGGTGTTGCGTTGGTCGTAGAG
GCATGGCGAAGGACAGCGTAGCTCTCAACTCTTCTATCCGTTCACCCAAT
TACCCCACTAACAGAAACGCTGGGTGGTCTGCGCACCATGCGACAAGGCC
GACGGGGCGAGAACCGGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTACG
CCGCGAGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGAGG
TTCTGGCTCCTATGAGCGGTTCATCAAGGCACACAAGGAGACAGTGCTGA
CCGAGGAGGACAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGACCAGCTG
GAGGACTTCAAAGACGATGGACAAGAGTACGTGTGCACGTGGGAAGTGAT
TAAAAAAAGAGATTTGACTTGGCAGCCCCCCCTCTCCCCCTCTCTTCCCT
CGCCCCTGATCCATCCTCATTCATATATTTACCTATCTCTCCAATAAATA
TAGAGATTTGACCGCAGCTGAAGAAGGATACCTAGGTACGGTGATGGAAA
GCGAAGGCTTTGGCGACAACGAGAATAATGGAGATAAGGCCCAGGGCCGC
AAAGGACGAGCCGGAGGAGGCCGTGGTGATGACGCGGGAGGGGATGACTC
GGGGAGTTACTTCGATTGGAACGAAGAATCTTTGTTCATCCCCAACTTGC
CAGAAAGGAATGAGGAGGAGGGAGGTTTTACCACGGATAAGATCACGGGA
AAGGATGACGTGCAATTGAGGGTGAACAAGTTGTTGTGGCGACGGTTGAA
GCTCAAGGCGAGGGATATGGATCTGCATGTCCCCTCGGCCTTTCGGAGGG
TTAAAATTGTGCAGAAGGCCATGGCCGAAGCAAGGGAAAAGATGGCACGA
GATCCGAGGAAGGAGGAAAGGACGATGAGCGTGGAGAAGAAGGAGGGGAA
GGCGGTCGTGACGTCTTTACGAGAAGACAAGGAGAAGGAAGTGCAGGAGG
GCGACGATGGGGGGGTAGGGGGAGTTACGGAGAATGACAGACAATCAAAT
AATATGACGGCGACGAGCGCTGCTGCTGCGGCTGCTGATCCTGATATCAA
GGAGGTGGCGAGGTTGAATCGGGCCAGAACCGTGGAGGCGATCGAGGCCG
AGATTGGACGGCTGTTGGTGGAGGGAAAGATGGACTTGCAGATGGCGCAG
GATGAGAGGAGGGCTAGAAAAAAAGCGGCCAAGGCAAGGAGTGTGAGTAA
AGGGGAGTGGGATGGGGACGAGGAAATGGGGGAGGAGGAATGGGACGATG
ATGAGGAGGAAGATGATGATGAGGAGGAAACGGCGGGGATGGACGATTGG
TCCAAGATTCATATGCAGGACTTGGAGGAGGCCTTGGGTGAGGAGATCCC
GACTATGGATGTGCATGAGGAGGGGTTTGAGGCGTTTCGGGAGTATGCGG
AGCAGTTGATTGAGTCAGGAGGGGTGATTGAGTATCGGTCTACTATGGCG
GATAAATACGATAGGGAAGTCTCCTTGCCCTTGCCACTGGCGACAGGACG
GGCTCTGAAGCAGGCCTTGCGGAGGGATCAGACGGCGCTGCATGAGACCA
CTCTTGCTCCACCTGCGCCTATGTCTCAGTCTTCGTCCTCGCCACCGGAT
TACGACGCCGCTGCTGCGTTTGCTTGGTTGGCACTCAATAAAAACCTCAG
CATGGGGGATACGACCAGGACGGAACTCAGCGAGGCCATGGCAAGTACTC
TACAGCGTCTTCGGGAGAAGCCAGGGAGGCTTGAACGGGCGCGAAGTCGC
GCCAAAGCCGCAGCGGCGAGTGGGGTCAAGACGGCGGGGGCGGGGTTGGA
TGCGGGGGAGGGAGGAGGGGGACGAGGCGGTGGGGGTGGCAAAGGGGGTG
GCAAGATGAAGGCCAAGTAG back to topCoding sequence (CDS) from alignment at chr2:1088668..1091787+ >NO02G03990.1 ID=NO02G03990.1|Name=NO02G03990.1|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at chr2:1088668..1091787+ (Nannochloropsis oceanica) ATGCTGCGCGGGTTAGCATTGCCGAGCCGGAGAGAGGTGGGGCCTTGCCT TCGGACAGCAGAAACGCTGGGTGGTCTGCGCACCATGCGACAAGGCCGAC GGGGCGAGAACCGGGACGTGCAAGAGTTCTTAGAAGAGGCCGTTACGCCG CGAGGGCAGTTTGGTGCTGGAGCTGCTGGAGCTGGGGCTGGGCGAGGTTC TGGCTCCTATGAGCGGTTCATCAAGGCACACAAGGAGACAGTGCTGACCG AGGAGGACAAGCGCTTCAAGACGTGGTCAAGTTGGAAAGACCAGCTGGAG GACTTCAAAGACGATGGACAAGAAGATTTGACCGCAGCTGAAGAAGGATA CCTAGGTACGGTGATGGAAAGCGAAGGCTTTGGCGACAACGAGAATAATG GAGATAAGGCCCAGGGCCGCAAAGGACGAGCCGGAGGAGGCCGTGGTGAT GACGCGGGAGGGGATGACTCGGGGAGTTACTTCGATTGGAACGAAGAATC TTTGTTCATCCCCAACTTGCCAGAAAGGAATGAGGAGGAGGGAGGTTTTA CCACGGATAAGATCACGGGAAAGGATGACGTGCAATTGAGGGTGAACAAG TTGTTGTGGCGACGGTTGAAGCTCAAGGCGAGGGATATGGATCTGCATGT CCCCTCGGCCTTTCGGAGGGTTAAAATTGTGCAGAAGGCCATGGCCGAAG CAAGGGAAAAGATGGCACGAGATCCGAGGAAGGAGGAAAGGACGATGAGC GTGGAGAAGAAGGAGGGGAAGGCGGTCGTGACGTCTTTACGAGAAGACAA GGAGAAGGAAGTGCAGGAGGGCGACGATGGGGGGGTAGGGGGAGTTACGG AGAATGACAGACAATCAAATAATATGACGGCGACGAGCGCTGCTGCTGCG GCTGCTGATCCTGATATCAAGGAGGTGGCGAGGTTGAATCGGGCCAGAAC CGTGGAGGCGATCGAGGCCGAGATTGGACGGCTGTTGGTGGAGGGAAAGA TGGACTTGCAGATGGCGCAGGATGAGAGGAGGGCTAGAAAAAAAGCGGCC AAGGCAAGGAGTGTGAGTAAAGGGGAGTGGGATGGGGACGAGGAAATGGG GGAGGAGGAATGGGACGATGATGAGGAGGAAGATGATGATGAGGAGGAAA CGGCGGGGATGGACGATTGGTCCAAGATTCATATGCAGGACTTGGAGGAG GCCTTGGGTGAGGAGATCCCGACTATGGATGTGCATGAGGAGGGGTTTGA GGCGTTTCGGGAGTATGCGGAGCAGTTGATTGAGTCAGGAGGGGTGATTG AGTATCGGTCTACTATGGCGGATAAATACGATAGGGAAGTCTCCTTGCCC TTGCCACTGGCGACAGGACGGGCTCTGAAGCAGGCCTTGCGGAGGGATCA GACGGCGCTGCATGAGACCACTCTTGCTCCACCTGCGCCTATGTCTCAGT CTTCGTCCTCGCCACCGGATTACGACGCCGCTGCTGCGTTTGCTTGGTTG GCACTCAATAAAAACCTCAGCATGGGGGATACGACCAGGACGGAACTCAG CGAGGCCATGGCAAGTACTCTACAGCGTCTTCGGGAGAAGCCAGGGAGGC TTGAACGGGCGCGAAGTCGCGCCAAAGCCGCAGCGGCGAGTGGGGTCAAG ACGGCGGGGGCGGGGTTGGATGCGGGGGAGGGAGGAGGGGGACGAGGCGG TGGGGGTGGCAAAGGGGGTGGCAAGATGAAGGCCAAGTAG back to top
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