NO02G03960.1, NO02G03960.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G03960.1
Unique Name	NO02G03960.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1540
Alignment location	chr2:1081865..1083404 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1081865..1083404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO02G03960.1 vs.

BLAST of NO02G03960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G03960	NO02G03960	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G03960.1	NO02G03960.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G03960.1.cds1	NO02G03960.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1081865..1083404-
coding sequence from alignment at chr2:1081865..1083404-

mRNA sequence

>NO02G03960.1 ID=NO02G03960.1|Name=NO02G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp
ATGCGAGAAGGGTGGGGATGGTCACGCGAGAAGGGTGGGGATGGTCACGC
GCTCGTCTTCGCAGTAGCAGCAGCAGCAGCAGAAGCAGGAGCAGAAGCAG
GAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAACGGCCGATTCTGCGCTGAGCAATAAGAACCAAGCTCTGAGTAA
AATGGCGGCAATGGTGTTGTTAGAGTGGTCAATGCAGCGGGCGATGGTCC
TTCGCTTGCGTCGGCGAAGGGAAGGAGGGAGGATGATGAGCGTGGTGGCC
GAGGAGGAGGAGGAAGGGAAGGGGAAAGGGATGGAGGGAGGGAGGGAGAA
GGGGGTGGTTCAGATGTTGGTGGATGGAACGGATGACGGTCAATTTTGGG
AGGTGATGCGCTACTTAGATACCATGTCCGAGTAAGAATGAGGGCCTGGA
GAAGGGGAAGAGAAAGGGACGGAGAGGGGGAGGAAAGAGGGAGGTCTAAA
AAATGCCTAGGGAACAGGTGGAAGGAAAGGCCGCGGTATGTGAGGGATAC
GGCGGATTGACTCTTTTTCAGATGGGAAAAGTAAATCGTGATTTTGTAAG
TATGTATGACATTAAAATTCATTTGCAAATGGAGGGGAGAAAGAAGTGGG
GAGGAAATGGGAGGAAAGCTGGCCCTAGAGAGGACCAAAGGGAAGGGGCA
CAGACGGACGCAGGGTTCACCTCTGTTATGTTCGATTCGAAAGGGTCAGC
AGCAAAAATTGAATGTCTTTAGGGATAAAAGCTATAAAGAAACATGAGCA
CCCAATGAGAAAGTAGAGATTATGATACTGACAGGGTATACGGGCCTGCA
CTGGGCCTGTGGTAGGGCAGGAAAATGTGATTGAAGAGGGGTACGTCCCA
CAACGACCCCTCGCCGTTCGTAATTTGTACGGTGCAGGTCGTAGCCACGT
CTTGTACAGAATGCTGCAGGAGGGTTTCCGTCCACTTAATGCCGAAAAGG
TCGTGATGGCTTTTCTGCTACCATATGCCGACACCGCATTTTTATTGCGT
CTAGCGTAAACGTTACTGTCTCGCTAATGCACACAAGGGAGATGTAGGAC
AATTTTTAGTGCTTGATTAAGTTAGCCCGTGCACACAAATCCACTTCATT
GCTTGACCTCCCGCCTCGGTCCTCGCCCTCGTCGTCTTTCTCGTCATCCC
CAGCTTACCTGCCTGAGCCCGAGACGAGGACCACAACGTGGCCAGCACCA
GGACTGTGCCTATTAGGCTGAGATATATGACTGCCTGTAGGTGTGGGTGT
ATAGTGGTGGCGAAGCGAGAGAGTTAGGCGAGTAAATTTGGAGGGTGGCT
ACAGTCGGAAAGGCACGATGGGCCATAGGGCACGTATGATGGGCTACAGG
GCACGTATGATGGGCCACAGGGCACGTACCTTGTGTTGAAAGAATGCCCA
AAAAAGACTCCAGACAATGATCAAGTACTAGAGTATCATATGTGTGTGAC
AAAAACGACATAACTTAACGCTAAATTATGTATCTTACCG

protein sequence of NO02G03960.1

>NO02G03960.1-protein ID=NO02G03960.1-protein|Name=NO02G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MREGWGWSREKGGDGHALVFAVAAAAAEAGAEAGGRGGGGGGGGRGGGGG
GGTADSALSNKNQALSKMAAMVLLEWSMQRAMVLRLRRRREGGRMMSVVA
EEEEEGKGKGMEGGREKGVVQMLVDGTDDGQFWEVMRYLDTMSE*

mRNA from alignment at chr2:1081865..1083404-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G03960.1 ID=NO02G03960.1|Name=NO02G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at chr2:1081865..1083404- (Nannochloropsis oceanica)
ATGCGAGAAGGGTGGGGATGGTCACGCGAGAAGGGTGGGGATGGTCACGC
GCTCGTCTTCGCAGTAGCAGCAGCAGCAGCAGAAGCAGGAGCAGAAGCAG
GAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAACGGCCGATTCTGCGCTGAGCAATAAGAACCAAGCTCTGAGTAA
AATGGCGGCAATGGTGTTGTTAGAGTGGTCAATGCAGCGGGCGATGGTCC
TTCGCTTGCGTCGGCGAAGGGAAGGAGGGAGGATGATGAGCGTGGTGGCC
GAGGAGGAGGAGGAAGGGAAGGGGAAAGGGATGGAGGGAGGGAGGGAGAA
GGGGGTGGTTCAGATGTTGGTGGATGGAACGGATGACGGTCAATTTTGGG
AGGTGATGCGCTACTTAGATACCATGTCCGAGTAAGAATGAGGGCCTGGA
GAAGGGGAAGAGAAAGGGACGGAGAGGGGGAGGAAAGAGGGAGGTCTAAA
AAATGCCTAGGGAACAGGTGGAAGGAAAGGCCGCGGTATGTGAGGGATAC
GGCGGATTGACTCTTTTTCAGATGGGAAAAGTAAATCGTGATTTTGTAAG
TATGTATGACATTAAAATTCATTTGCAAATGGAGGGGAGAAAGAAGTGGG
GAGGAAATGGGAGGAAAGCTGGCCCTAGAGAGGACCAAAGGGAAGGGGCA
CAGACGGACGCAGGGTTCACCTCTGTTATGTTCGATTCGAAAGGGTCAGC
AGCAAAAATTGAATGTCTTTAGGGATAAAAGCTATAAAGAAACATGAGCA
CCCAATGAGAAAGTAGAGATTATGATACTGACAGGGTATACGGGCCTGCA
CTGGGCCTGTGGTAGGGCAGGAAAATGTGATTGAAGAGGGGTACGTCCCA
CAACGACCCCTCGCCGTTCGTAATTTGTACGGTGCAGGTCGTAGCCACGT
CTTGTACAGAATGCTGCAGGAGGGTTTCCGTCCACTTAATGCCGAAAAGG
TCGTGATGGCTTTTCTGCTACCATATGCCGACACCGCATTTTTATTGCGT
CTAGCGTAAACGTTACTGTCTCGCTAATGCACACAAGGGAGATGTAGGAC
AATTTTTAGTGCTTGATTAAGTTAGCCCGTGCACACAAATCCACTTCATT
GCTTGACCTCCCGCCTCGGTCCTCGCCCTCGTCGTCTTTCTCGTCATCCC
CAGCTTACCTGCCTGAGCCCGAGACGAGGACCACAACGTGGCCAGCACCA
GGACTGTGCCTATTAGGCTGAGATATATGACTGCCTGTAGGTGTGGGTGT
ATAGTGGTGGCGAAGCGAGAGAGTTAGGCGAGTAAATTTGGAGGGTGGCT
ACAGTCGGAAAGGCACGATGGGCCATAGGGCACGTATGATGGGCTACAGG
GCACGTATGATGGGCCACAGGGCACGTACCTTGTGTTGAAAGAATGCCCA
AAAAAGACTCCAGACAATGATCAAGTACTAGAGTATCATATGTGTGTGAC
AAAAACGACATAACTTAACGCTAAATTATGTATCTTACCG

Coding sequence (CDS) from alignment at chr2:1081865..1083404-

>NO02G03960.1 ID=NO02G03960.1|Name=NO02G03960.1|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at chr2:1081865..1083404- (Nannochloropsis oceanica)
ATGCGAGAAGGGTGGGGATGGTCACGCGAGAAGGGTGGGGATGGTCACGC
GCTCGTCTTCGCAGTAGCAGCAGCAGCAGCAGAAGCAGGAGCAGAAGCAG
GAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAACGGCCGATTCTGCGCTGAGCAATAAGAACCAAGCTCTGAGTAA
AATGGCGGCAATGGTGTTGTTAGAGTGGTCAATGCAGCGGGCGATGGTCC
TTCGCTTGCGTCGGCGAAGGGAAGGAGGGAGGATGATGAGCGTGGTGGCC
GAGGAGGAGGAGGAAGGGAAGGGGAAAGGGATGGAGGGAGGGAGGGAGAA
GGGGGTGGTTCAGATGTTGGTGGATGGAACGGATGACGGTCAATTTTGGG
AGGTGATGCGCTACTTAGATACCATGTCCGAGTAA

Synonyms

Publications