NO02G03910.1, NO02G03910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03910.1
Unique NameNO02G03910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1596
Alignment locationchr2:1069943..1071754 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1069943..1071754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G03910.1 vs.
Match: EWM30248.1 (gtp-binding protein era [Nannochloropsis gaditana])

HSP 1 Score: 615.9 bits (1587), Expect = 1.200e-172
Identity = 301/358 (84.08%), Postives = 329/358 (91.90%), Query Frame = 0
Query:  163 DEDDLTDDVRAMLAAPPKELGELLKDAGIEFGDPTLMVDDDGPLGFRAGFVSIVGSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIMGVVTGGDFQIVYYDTPGVLRPNYKLQEGMMAFVRESLGDADVVLLMTDVFENPSEWPDQEIFEQMQRSVRPLLLAVNKIDLLPNATHPQGNLGKDALAKIGNLEDVIGRWQAVLPNADIIPISAHERLNLDGLLHKIKQDLPLSPPLYPNDTLTDKPQRFFASEIIREKVFTGYSKEIPYSCEVAVTAFKDQGRMIKINSTIFTTRDSHVPILIGTKGNKLKEVGTLARLDLEEFFGKKVYLEMRVKVRKDWRTNMKDLSAFGYMQQSGD 521
            D+++L+D  RAMLAAP K+L ELLKDAGIEFGDPTLM DD G  GFRAGFVSI+GSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIMGVVTG DFQIVYYDTPGVLRPNYKLQEGMMAFV+ESLGDADVVLLMTDVFE+P ++PDQ+IFE MQ+S RPLLLAVNKIDLLPNATHPQGNLGKDAL ++G L+DV+ RWQA LPNA IIPISA E  NLD LL  +K++LP SPPLYPNDTLTDKPQRFFASE+IREK+FT YSKEIPYSCEV+VT FKDQGR+IKINSTIFTTRDSHVPILIGTKG+KLKEVGT ARLDLE FFGKK+YLEMRVKVRKDWR+N+KDLSAFGYMQQ G+
Sbjct:    6 DDEELSDQHRAMLAAPAKKLDELLKDAGIEFGDPTLMEDDQGSEGFRAGFVSIIGSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIMGVVTGEDFQIVYYDTPGVLRPNYKLQEGMMAFVKESLGDADVVLLMTDVFEDPRDFPDQQIFEHMQQSRRPLLLAVNKIDLLPNATHPQGNLGKDALERVGTLQDVVARWQAALPNASIIPISAREYFNLDELLASLKEELPPSPPLYPNDTLTDKPQRFFASELIREKLFTSYSKEIPYSCEVSVTGFKDQGRLIKINSTIFTTRDSHVPILIGTKGSKLKEVGTQARLDLENFFGKKIYLEMRVKVRKDWRSNLKDLSAFGYMQQGGE 363          
The following BLAST results are available for this feature:
BLAST of NO02G03910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30248.11.200e-17284.08gtp-binding protein era [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03910NO02G03910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03910.1NO02G03910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03910.1.cds1NO02G03910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03910.1.cds2NO02G03910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03910.1 ID=NO02G03910.1|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
ATGAGGATCCCCTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCT
GCTGGTGCTAGGCTTGTCTTCCACCCGTCACGTTGGTGTTGCGGCCTCGT
CTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCATCCTGCGCGTTGCCAGA
GCTGGGCTTCAGTGCTCTTCGTCACCTTCAATATCAACAAACAGGGATGC
ATCCCTGCCCTCTATCACCACCACCACCATCAAGAGTAGCAGTAGAGGCA
GCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGACAATTTTATGGGTCGCA
GGCAAAAAGGCCACGGGCGACAATGACTCCCCCAGCGACGACAAGCCCAA
GGTCAAATCACGGATGAAAAAGGGCGCCAAGGAAGAGAAAAAGGAAGAAG
ACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGAGGGGGCGGAAAGAGGG
GGAAGAGAGAGATCGACCGGCGAAGGGTATGCATACGACGAAGACGACCT
CACTGACGATGTCAGGGCTATGTTGGCGGCTCCACCTAAGGAGCTAGGGG
AACTGTTGAAAGATGCGGGGATAGAATTTGGGGATCCGACGCTGATGGTA
GATGATGATGGCCCTCTCGGCTTCAGGGCAGGGTTTGTCAGTATTGTTGG
GAGCCCGAATGTTGGGAAGAGCACGTTGATGAACTCCTTGGTAGGGGAAC
GTGTATCGATAGTGACGTCAAAACAGCAGACAACAAGGCATCAGATCATG
GGGGTGGTGACGGGGGGGGATTTCCAGATTGTTTATTATGATACCCCGGG
GGTTTTAAGGCCCAATTATAAATTGCAGGAAGGGATGATGGCGTTTGTGA
GGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTTGATGACGGATGTGTTT
GAAAACCCATCTGAATGGCCCGATCAGGAAATTTTTGAGCAGATGCAGCG
AAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAAATTGACTTATTGCCGA
ACGCGACCCATCCGCAAGGGAACCTCGGGAAGGACGCCTTGGCAAAGATC
GGGAATTTGGAAGATGTGATTGGCCGGTGGCAAGCGGTACTGCCCAATGC
TGACATTATTCCTATTTCGGCTCATGAGCGATTGAATCTGGATGGGCTGC
TGCATAAGATTAAGCAGGATTTGCCATTATCCCCCCCTCTGTACCCCAAT
GACACCTTGACTGACAAGCCGCAACGATTTTTTGCATCGGAGATTATTCG
CGAGAAGGTTTTCACGGGATATAGTAAGGAGATACCTTATTCCTGCGAGG
TGGCTGTGACTGCGTTTAAGGACCAGGGGAGAATGATAAAGATCAATTCA
ACGATTTTTACGACGCGGGACTCGCATGTCCCGATTTTGATCGGGACGAA
AGGCAATAAATTGAAGGAGGTGGGGACGTTGGCTCGCTTGGATTTGGAAG
AATTTTTTGGGAAGAAGGTTTATTTGGAGATGCGCGTGAAGGTGCGTAAA
GATTGGCGGACGAACATGAAGGATTTGTCGGCTTTTGGGTACATGCAGCA
AAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAATAGACAAAAGTAA
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protein sequence of NO02G03910.1

>NO02G03910.1-protein ID=NO02G03910.1-protein|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MRIPSVAAAATAAATALLVLGLSSTRHVGVAASSRRRNSGQAAFILRVAR
AGLQCSSSPSISTNRDASLPSITTTTIKSSSRGSSGSRKESASRTILWVA
GKKATGDNDSPSDDKPKVKSRMKKGAKEEKKEEDLEEFLAGLNVEGAERG
GRERSTGEGYAYDEDDLTDDVRAMLAAPPKELGELLKDAGIEFGDPTLMV
DDDGPLGFRAGFVSIVGSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIM
GVVTGGDFQIVYYDTPGVLRPNYKLQEGMMAFVRESLGDADVVLLMTDVF
ENPSEWPDQEIFEQMQRSVRPLLLAVNKIDLLPNATHPQGNLGKDALAKI
GNLEDVIGRWQAVLPNADIIPISAHERLNLDGLLHKIKQDLPLSPPLYPN
DTLTDKPQRFFASEIIREKVFTGYSKEIPYSCEVAVTAFKDQGRMIKINS
TIFTTRDSHVPILIGTKGNKLKEVGTLARLDLEEFFGKKVYLEMRVKVRK
DWRTNMKDLSAFGYMQQSGDAGKEVGGNRQK*
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mRNA from alignment at chr2:1069943..1071754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03910.1 ID=NO02G03910.1|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at chr2:1069943..1071754- (Nannochloropsis oceanica)
ATGAGGATCCCCTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCT GCTGGTGCTAGGCTTGTCTTCCACCCGTCACGTGTAAGTTTGGACAAGGG AGGCAAAAAGGCCGGAGGAAAGGTGCTTGGTTGGCCTGGCTACAGGGGAA GATGCAGGAAAAGCCAGCTCGAGTGCATGATGTAGGCAGAAGCCTGCATT CATACGGCAATAAGGGAAAAGGGATATAGTTGTCTTGGTCCCACAAAAGG CTTGCGCTCACATTAAGCTCTCACACGCCCCCCCTGCCTATCCACACAGT GGTGTTGCGGCCTCGTCTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCAT CCTGCGCGTTGCCAGAGCTGGGCTTCAGTGCTCTTCGTCACCTTCAATAT CAACAAACAGGGATGCATCCCTGCCCTCTATCACCACCACCACCATCAAG AGTAGCAGTAGAGGCAGCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGAC AATTTTATGGGTCGCAGGCAAAAAGGCCACGGGCGACAATGACTCCCCCA GCGACGACAAGCCCAAGGTCAAATCACGGATGAAAAAGGGCGCCAAGGAA GAGAAAAAGGAAGAAGACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGA GGGGGCGGAAAGAGGGGGAAGAGAGAGATCGACCGGCGAAGGGTATGCAT ACGACGAAGACGACCTCACTGACGATGTCAGGGCTATGTTGGCGGCTCCA CCTAAGGAGCTAGGGGAACTGTTGAAAGATGCGGGGATAGAATTTGGGGA TCCGACGCTGATGGTAGATGATGATGGCCCTCTCGGCTTCAGGGCAGGGT TTGTCAGTATTGTTGGGAGCCCGAATGTTGGGAAGAGCACGTTGATGAAC TCCTTGGTAGGGGAACGTGTATCGATAGTGACGTCAAAACAGCAGACAAC AAGGCATCAGATCATGGGGGTGGTGACGGGGGGGGATTTCCAGATTGTTT ATTATGATACCCCGGGGGTTTTAAGGCCCAATTATAAATTGCAGGAAGGG ATGATGGCGTTTGTGAGGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTT GATGACGGATGTGTTTGAAAACCCATCTGAATGGCCCGATCAGGAAATTT TTGAGCAGATGCAGCGAAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAA ATTGACTTATTGCCGAACGCGACCCATCCGCAAGGGAACCTCGGGAAGGA CGCCTTGGCAAAGATCGGGAATTTGGAAGATGTGATTGGCCGGTGGCAAG CGGTACTGCCCAATGCTGACATTATTCCTATTTCGGCTCATGAGCGATTG AATCTGGATGGGCTGCTGCATAAGATTAAGCAGGATTTGCCATTATCCCC CCCTCTGTACCCCAATGACACCTTGACTGACAAGCCGCAACGATTTTTTG CATCGGAGATTATTCGCGAGAAGGTTTTCACGGGATATAGTAAGGAGATA CCTTATTCCTGCGAGGTGGCTGTGACTGCGTTTAAGGACCAGGGGAGAAT GATAAAGATCAATTCAACGATTTTTACGACGCGGGACTCGCATGTCCCGA TTTTGATCGGGACGAAAGGCAATAAATTGAAGGAGGTGGGGACGTTGGCT CGCTTGGATTTGGAAGAATTTTTTGGGAAGAAGGTTTATTTGGAGATGCG CGTGAAGGTGCGTAAAGATTGGCGGACGAACATGAAGGATTTGTCGGCTT TTGGGTACATGCAGCAAAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAAT AGACAAAAGTAA
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Coding sequence (CDS) from alignment at chr2:1069943..1071754-

>NO02G03910.1 ID=NO02G03910.1|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr2:1069943..1071754- (Nannochloropsis oceanica)
ATGAGGATCCCCTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCT
GCTGGTGCTAGGCTTGTCTTCCACCCGTCACGTTGGTGTTGCGGCCTCGT
CTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCATCCTGCGCGTTGCCAGA
GCTGGGCTTCAGTGCTCTTCGTCACCTTCAATATCAACAAACAGGGATGC
ATCCCTGCCCTCTATCACCACCACCACCATCAAGAGTAGCAGTAGAGGCA
GCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGACAATTTTATGGGTCGCA
GGCAAAAAGGCCACGGGCGACAATGACTCCCCCAGCGACGACAAGCCCAA
GGTCAAATCACGGATGAAAAAGGGCGCCAAGGAAGAGAAAAAGGAAGAAG
ACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGAGGGGGCGGAAAGAGGG
GGAAGAGAGAGATCGACCGGCGAAGGGTATGCATACGACGAAGACGACCT
CACTGACGATGTCAGGGCTATGTTGGCGGCTCCACCTAAGGAGCTAGGGG
AACTGTTGAAAGATGCGGGGATAGAATTTGGGGATCCGACGCTGATGGTA
GATGATGATGGCCCTCTCGGCTTCAGGGCAGGGTTTGTCAGTATTGTTGG
GAGCCCGAATGTTGGGAAGAGCACGTTGATGAACTCCTTGGTAGGGGAAC
GTGTATCGATAGTGACGTCAAAACAGCAGACAACAAGGCATCAGATCATG
GGGGTGGTGACGGGGGGGGATTTCCAGATTGTTTATTATGATACCCCGGG
GGTTTTAAGGCCCAATTATAAATTGCAGGAAGGGATGATGGCGTTTGTGA
GGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTTGATGACGGATGTGTTT
GAAAACCCATCTGAATGGCCCGATCAGGAAATTTTTGAGCAGATGCAGCG
AAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAAATTGACTTATTGCCGA
ACGCGACCCATCCGCAAGGGAACCTCGGGAAGGACGCCTTGGCAAAGATC
GGGAATTTGGAAGATGTGATTGGCCGGTGGCAAGCGGTACTGCCCAATGC
TGACATTATTCCTATTTCGGCTCATGAGCGATTGAATCTGGATGGGCTGC
TGCATAAGATTAAGCAGGATTTGCCATTATCCCCCCCTCTGTACCCCAAT
GACACCTTGACTGACAAGCCGCAACGATTTTTTGCATCGGAGATTATTCG
CGAGAAGGTTTTCACGGGATATAGTAAGGAGATACCTTATTCCTGCGAGG
TGGCTGTGACTGCGTTTAAGGACCAGGGGAGAATGATAAAGATCAATTCA
ACGATTTTTACGACGCGGGACTCGCATGTCCCGATTTTGATCGGGACGAA
AGGCAATAAATTGAAGGAGGTGGGGACGTTGGCTCGCTTGGATTTGGAAG
AATTTTTTGGGAAGAAGGTTTATTTGGAGATGCGCGTGAAGGTGCGTAAA
GATTGGCGGACGAACATGAAGGATTTGTCGGCTTTTGGGTACATGCAGCA
AAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAATAGACAAAAGTAA
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Synonyms
Publications