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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1069943..1071754 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03910.1 vs.
Match: EWM30248.1 (gtp-binding protein era [Nannochloropsis gaditana]) HSP 1 Score: 615.9 bits (1587), Expect = 1.200e-172 Identity = 301/358 (84.08%), Postives = 329/358 (91.90%), Query Frame = 0
Query: 163 DEDDLTDDVRAMLAAPPKELGELLKDAGIEFGDPTLMVDDDGPLGFRAGFVSIVGSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIMGVVTGGDFQIVYYDTPGVLRPNYKLQEGMMAFVRESLGDADVVLLMTDVFENPSEWPDQEIFEQMQRSVRPLLLAVNKIDLLPNATHPQGNLGKDALAKIGNLEDVIGRWQAVLPNADIIPISAHERLNLDGLLHKIKQDLPLSPPLYPNDTLTDKPQRFFASEIIREKVFTGYSKEIPYSCEVAVTAFKDQGRMIKINSTIFTTRDSHVPILIGTKGNKLKEVGTLARLDLEEFFGKKVYLEMRVKVRKDWRTNMKDLSAFGYMQQSGD 521
D+++L+D RAMLAAP K+L ELLKDAGIEFGDPTLM DD G GFRAGFVSI+GSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIMGVVTG DFQIVYYDTPGVLRPNYKLQEGMMAFV+ESLGDADVVLLMTDVFE+P ++PDQ+IFE MQ+S RPLLLAVNKIDLLPNATHPQGNLGKDAL ++G L+DV+ RWQA LPNA IIPISA E NLD LL +K++LP SPPLYPNDTLTDKPQRFFASE+IREK+FT YSKEIPYSCEV+VT FKDQGR+IKINSTIFTTRDSHVPILIGTKG+KLKEVGT ARLDLE FFGKK+YLEMRVKVRKDWR+N+KDLSAFGYMQQ G+
Sbjct: 6 DDEELSDQHRAMLAAPAKKLDELLKDAGIEFGDPTLMEDDQGSEGFRAGFVSIIGSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIMGVVTGEDFQIVYYDTPGVLRPNYKLQEGMMAFVKESLGDADVVLLMTDVFEDPRDFPDQQIFEHMQQSRRPLLLAVNKIDLLPNATHPQGNLGKDALERVGTLQDVVARWQAALPNASIIPISAREYFNLDELLASLKEELPPSPPLYPNDTLTDKPQRFFASELIREKLFTSYSKEIPYSCEVSVTGFKDQGRLIKINSTIFTTRDSHVPILIGTKGSKLKEVGTQARLDLENFFGKKIYLEMRVKVRKDWRSNLKDLSAFGYMQQGGE 363
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03910.1 ID=NO02G03910.1|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp ATGAGGATCCCCTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCT GCTGGTGCTAGGCTTGTCTTCCACCCGTCACGTTGGTGTTGCGGCCTCGT CTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCATCCTGCGCGTTGCCAGA GCTGGGCTTCAGTGCTCTTCGTCACCTTCAATATCAACAAACAGGGATGC ATCCCTGCCCTCTATCACCACCACCACCATCAAGAGTAGCAGTAGAGGCA GCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGACAATTTTATGGGTCGCA GGCAAAAAGGCCACGGGCGACAATGACTCCCCCAGCGACGACAAGCCCAA GGTCAAATCACGGATGAAAAAGGGCGCCAAGGAAGAGAAAAAGGAAGAAG ACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGAGGGGGCGGAAAGAGGG GGAAGAGAGAGATCGACCGGCGAAGGGTATGCATACGACGAAGACGACCT CACTGACGATGTCAGGGCTATGTTGGCGGCTCCACCTAAGGAGCTAGGGG AACTGTTGAAAGATGCGGGGATAGAATTTGGGGATCCGACGCTGATGGTA GATGATGATGGCCCTCTCGGCTTCAGGGCAGGGTTTGTCAGTATTGTTGG GAGCCCGAATGTTGGGAAGAGCACGTTGATGAACTCCTTGGTAGGGGAAC GTGTATCGATAGTGACGTCAAAACAGCAGACAACAAGGCATCAGATCATG GGGGTGGTGACGGGGGGGGATTTCCAGATTGTTTATTATGATACCCCGGG GGTTTTAAGGCCCAATTATAAATTGCAGGAAGGGATGATGGCGTTTGTGA GGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTTGATGACGGATGTGTTT GAAAACCCATCTGAATGGCCCGATCAGGAAATTTTTGAGCAGATGCAGCG AAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAAATTGACTTATTGCCGA ACGCGACCCATCCGCAAGGGAACCTCGGGAAGGACGCCTTGGCAAAGATC GGGAATTTGGAAGATGTGATTGGCCGGTGGCAAGCGGTACTGCCCAATGC TGACATTATTCCTATTTCGGCTCATGAGCGATTGAATCTGGATGGGCTGC TGCATAAGATTAAGCAGGATTTGCCATTATCCCCCCCTCTGTACCCCAAT GACACCTTGACTGACAAGCCGCAACGATTTTTTGCATCGGAGATTATTCG CGAGAAGGTTTTCACGGGATATAGTAAGGAGATACCTTATTCCTGCGAGG TGGCTGTGACTGCGTTTAAGGACCAGGGGAGAATGATAAAGATCAATTCA ACGATTTTTACGACGCGGGACTCGCATGTCCCGATTTTGATCGGGACGAA AGGCAATAAATTGAAGGAGGTGGGGACGTTGGCTCGCTTGGATTTGGAAG AATTTTTTGGGAAGAAGGTTTATTTGGAGATGCGCGTGAAGGTGCGTAAA GATTGGCGGACGAACATGAAGGATTTGTCGGCTTTTGGGTACATGCAGCA AAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAATAGACAAAAGTAA back to topprotein sequence of NO02G03910.1 >NO02G03910.1-protein ID=NO02G03910.1-protein|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp MRIPSVAAAATAAATALLVLGLSSTRHVGVAASSRRRNSGQAAFILRVAR AGLQCSSSPSISTNRDASLPSITTTTIKSSSRGSSGSRKESASRTILWVA GKKATGDNDSPSDDKPKVKSRMKKGAKEEKKEEDLEEFLAGLNVEGAERG GRERSTGEGYAYDEDDLTDDVRAMLAAPPKELGELLKDAGIEFGDPTLMV DDDGPLGFRAGFVSIVGSPNVGKSTLMNSLVGERVSIVTSKQQTTRHQIM GVVTGGDFQIVYYDTPGVLRPNYKLQEGMMAFVRESLGDADVVLLMTDVF ENPSEWPDQEIFEQMQRSVRPLLLAVNKIDLLPNATHPQGNLGKDALAKI GNLEDVIGRWQAVLPNADIIPISAHERLNLDGLLHKIKQDLPLSPPLYPN DTLTDKPQRFFASEIIREKVFTGYSKEIPYSCEVAVTAFKDQGRMIKINS TIFTTRDSHVPILIGTKGNKLKEVGTLARLDLEEFFGKKVYLEMRVKVRK DWRTNMKDLSAFGYMQQSGDAGKEVGGNRQK* back to topmRNA from alignment at chr2:1069943..1071754- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03910.1 ID=NO02G03910.1|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at chr2:1069943..1071754- (Nannochloropsis oceanica) ATGAGGATCCCCTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCT
GCTGGTGCTAGGCTTGTCTTCCACCCGTCACGTGTAAGTTTGGACAAGGG
AGGCAAAAAGGCCGGAGGAAAGGTGCTTGGTTGGCCTGGCTACAGGGGAA
GATGCAGGAAAAGCCAGCTCGAGTGCATGATGTAGGCAGAAGCCTGCATT
CATACGGCAATAAGGGAAAAGGGATATAGTTGTCTTGGTCCCACAAAAGG
CTTGCGCTCACATTAAGCTCTCACACGCCCCCCCTGCCTATCCACACAGT
GGTGTTGCGGCCTCGTCTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCAT
CCTGCGCGTTGCCAGAGCTGGGCTTCAGTGCTCTTCGTCACCTTCAATAT
CAACAAACAGGGATGCATCCCTGCCCTCTATCACCACCACCACCATCAAG
AGTAGCAGTAGAGGCAGCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGAC
AATTTTATGGGTCGCAGGCAAAAAGGCCACGGGCGACAATGACTCCCCCA
GCGACGACAAGCCCAAGGTCAAATCACGGATGAAAAAGGGCGCCAAGGAA
GAGAAAAAGGAAGAAGACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGA
GGGGGCGGAAAGAGGGGGAAGAGAGAGATCGACCGGCGAAGGGTATGCAT
ACGACGAAGACGACCTCACTGACGATGTCAGGGCTATGTTGGCGGCTCCA
CCTAAGGAGCTAGGGGAACTGTTGAAAGATGCGGGGATAGAATTTGGGGA
TCCGACGCTGATGGTAGATGATGATGGCCCTCTCGGCTTCAGGGCAGGGT
TTGTCAGTATTGTTGGGAGCCCGAATGTTGGGAAGAGCACGTTGATGAAC
TCCTTGGTAGGGGAACGTGTATCGATAGTGACGTCAAAACAGCAGACAAC
AAGGCATCAGATCATGGGGGTGGTGACGGGGGGGGATTTCCAGATTGTTT
ATTATGATACCCCGGGGGTTTTAAGGCCCAATTATAAATTGCAGGAAGGG
ATGATGGCGTTTGTGAGGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTT
GATGACGGATGTGTTTGAAAACCCATCTGAATGGCCCGATCAGGAAATTT
TTGAGCAGATGCAGCGAAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAA
ATTGACTTATTGCCGAACGCGACCCATCCGCAAGGGAACCTCGGGAAGGA
CGCCTTGGCAAAGATCGGGAATTTGGAAGATGTGATTGGCCGGTGGCAAG
CGGTACTGCCCAATGCTGACATTATTCCTATTTCGGCTCATGAGCGATTG
AATCTGGATGGGCTGCTGCATAAGATTAAGCAGGATTTGCCATTATCCCC
CCCTCTGTACCCCAATGACACCTTGACTGACAAGCCGCAACGATTTTTTG
CATCGGAGATTATTCGCGAGAAGGTTTTCACGGGATATAGTAAGGAGATA
CCTTATTCCTGCGAGGTGGCTGTGACTGCGTTTAAGGACCAGGGGAGAAT
GATAAAGATCAATTCAACGATTTTTACGACGCGGGACTCGCATGTCCCGA
TTTTGATCGGGACGAAAGGCAATAAATTGAAGGAGGTGGGGACGTTGGCT
CGCTTGGATTTGGAAGAATTTTTTGGGAAGAAGGTTTATTTGGAGATGCG
CGTGAAGGTGCGTAAAGATTGGCGGACGAACATGAAGGATTTGTCGGCTT
TTGGGTACATGCAGCAAAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAAT
AGACAAAAGTAA back to topCoding sequence (CDS) from alignment at chr2:1069943..1071754- >NO02G03910.1 ID=NO02G03910.1|Name=NO02G03910.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr2:1069943..1071754- (Nannochloropsis oceanica) ATGAGGATCCCCTCAGTAGCAGCAGCAGCAACAGCAGCAGCAACAGCCCT GCTGGTGCTAGGCTTGTCTTCCACCCGTCACGTTGGTGTTGCGGCCTCGT CTAGAAGAAGAAACAGCGGGCAGGCGGCGTTCATCCTGCGCGTTGCCAGA GCTGGGCTTCAGTGCTCTTCGTCACCTTCAATATCAACAAACAGGGATGC ATCCCTGCCCTCTATCACCACCACCACCATCAAGAGTAGCAGTAGAGGCA GCAGTGGCAGCAGAAAAGAAAGCGCTTCACGGACAATTTTATGGGTCGCA GGCAAAAAGGCCACGGGCGACAATGACTCCCCCAGCGACGACAAGCCCAA GGTCAAATCACGGATGAAAAAGGGCGCCAAGGAAGAGAAAAAGGAAGAAG ACTTAGAAGAATTCCTCGCAGGGTTGAATGTAGAGGGGGCGGAAAGAGGG GGAAGAGAGAGATCGACCGGCGAAGGGTATGCATACGACGAAGACGACCT CACTGACGATGTCAGGGCTATGTTGGCGGCTCCACCTAAGGAGCTAGGGG AACTGTTGAAAGATGCGGGGATAGAATTTGGGGATCCGACGCTGATGGTA GATGATGATGGCCCTCTCGGCTTCAGGGCAGGGTTTGTCAGTATTGTTGG GAGCCCGAATGTTGGGAAGAGCACGTTGATGAACTCCTTGGTAGGGGAAC GTGTATCGATAGTGACGTCAAAACAGCAGACAACAAGGCATCAGATCATG GGGGTGGTGACGGGGGGGGATTTCCAGATTGTTTATTATGATACCCCGGG GGTTTTAAGGCCCAATTATAAATTGCAGGAAGGGATGATGGCGTTTGTGA GGGAAAGTTTAGGGGACGCCGATGTGGTGTTGTTGATGACGGATGTGTTT GAAAACCCATCTGAATGGCCCGATCAGGAAATTTTTGAGCAGATGCAGCG AAGTGTACGGCCGTTGTTGTTGGCGGTGAATAAAATTGACTTATTGCCGA ACGCGACCCATCCGCAAGGGAACCTCGGGAAGGACGCCTTGGCAAAGATC GGGAATTTGGAAGATGTGATTGGCCGGTGGCAAGCGGTACTGCCCAATGC TGACATTATTCCTATTTCGGCTCATGAGCGATTGAATCTGGATGGGCTGC TGCATAAGATTAAGCAGGATTTGCCATTATCCCCCCCTCTGTACCCCAAT GACACCTTGACTGACAAGCCGCAACGATTTTTTGCATCGGAGATTATTCG CGAGAAGGTTTTCACGGGATATAGTAAGGAGATACCTTATTCCTGCGAGG TGGCTGTGACTGCGTTTAAGGACCAGGGGAGAATGATAAAGATCAATTCA ACGATTTTTACGACGCGGGACTCGCATGTCCCGATTTTGATCGGGACGAA AGGCAATAAATTGAAGGAGGTGGGGACGTTGGCTCGCTTGGATTTGGAAG AATTTTTTGGGAAGAAGGTTTATTTGGAGATGCGCGTGAAGGTGCGTAAA GATTGGCGGACGAACATGAAGGATTTGTCGGCTTTTGGGTACATGCAGCA AAGCGGGGATGCGGGCAAAGAGGTTGGTGGGAATAGACAAAAGTAA back to top
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