NO02G03850.2, NO02G03850.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G03850.2
Unique Name	NO02G03850.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2764
Alignment location	chr2:1049770..1052944 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1049770..1052944 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G03850.2 vs.
Match: EWM30256.1 (hypothetical protein Naga_100003g91 [Nannochloropsis gaditana])

HSP 1 Score: 487.3 bits (1253), Expect = 4.200e-134
Identity = 249/314 (79.30%), Postives = 276/314 (87.90%), Query Frame = 0

Query:   49 SGRILQVITDIDDTVKSSGGLRLLGVALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGRDPARVAVLTARAREFKFALELKPSHKVCRTYAAAGVDNGVDGWGVGTVLYGSVKEWVCQGRKGLRKFRNFEALRREDRFDLTDYVFVGDTGELDVQAGESMIRKYPTRIKALFMHYVSEARPSPPPPRDRSLLDVPVIYFQTYVGAAVKAAGLGLLDRRGVEAVIARALDELEGGGK-KGEKKG--GRKATPEQLADLMADIDLAKRTVLMTKEEDGGTGKGKREGGAEEVLVLLRKLFRPPDVIVPGRIRVRK 360
            SGRILQVITDIDDTVKSSGGLRL+G+ALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGR+PARVAVLTARAREFKFALELKPSHKVCRTYAAAG +NGV+GWGVGTVLYGSVKEWVCQ RKGLRKFRNFEALR +DR D TDYVFVGDTGELD+QAGESMIRKYP+RIKALFMHYVSE+RPSPPPPRDR+LLDVPVIYF+TYVGAAVKAA LGLL   GVEAV+AR L+E+EGGG   GE KG   RKAT EQ+A++MADI LA+    M + + G  G+ +R G  EE L L+R+LFRPPD  +P R+ VR+
Sbjct:  102 SGRILQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQDRLDRTDYVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSESRPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLEEIEGGGSATGEGKGRRKRKATAEQVAEVMADIALAE--AFMGRSKAGKEGRKQRRG--EEALELVRELFRPPDTRLPARVSVRR 411

The following BLAST results are available for this feature:

BLAST of NO02G03850.2 vs.

BLAST of NO02G03850.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30256.1	4.200e-134	79.30	hypothetical protein Naga_100003g91 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G03850	NO02G03850	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G03850.2	NO02G03850.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G03850.2.cds1	NO02G03850.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G03850.2.cds2	NO02G03850.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G03850.2.cds3	NO02G03850.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G03850.2.cds4	NO02G03850.2.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1049770..1052944-
coding sequence from alignment at chr2:1049770..1052944-

mRNA sequence

>NO02G03850.2 ID=NO02G03850.2|Name=NO02G03850.2|organism=Nannochloropsis oceanica|type=mRNA|length=2764bp
CCAAGAGGTAAATGCTGTGCTATAGACTATTGTACGTATGTGTGTGAAAT
TGATCGGTTGTCAGTACTTTTGATAGAGTAAGTACATTTGATAAAGCACA
CCATTACCGTGGTGTGGTATGTGTCGAGTGAGTATGGACTATCGTTGTCA
AGAAAAGAAGACACAGAGCGATTAAGATTGACACCAGAGAAAATAAAAGC
ATAAATCACATTATTAAAATGTGATCCCAAAAAGTCTGTACATGTTCTTT
CAGTCACATGCTCAAGTCTCTACGTGTACTTTACGCCACCCAAAAACGTC
TGCGGGTCCGGCACTGCTCCATTGAAATTGGCATTCGAAAAATCAAACCC
GGGGTTCTCCTCCTGAAATCTCTCCAGCATGAGCTGCTTCCTCACGGTTT
CGCTCGTCAAGGGGTCCAACGCGCCCCGCCCGGCCAAGGCGCTGGGCCAG
ACTTCCCCCTTGCTCGCTTTCTGTAGCAAGATATGCAGCTCCCCATCTTC
CAAGGTCCAAAAGCTTTCAGTCGCCTTGACAGACCCAGCAGTTGTCTCGT
CAATGAAAGGATGGGGTGCCCCTTTCAAGCCTAAGGTGAGATGGGAGGGT
GTGATAGTGCAGTACAGCATGCTGGCCTTCACCAACGGTGGCGGAGTGAT
GTAAAGGCTGACGTCTTCCAGCGTTTGCTCCCATTCATAGACAGTCTGGC
CCCCGTGCTCGAACTTGAGCCGGTGCCCTTCTTTGCCCTTGGGTGTGATA
AAAGTGCTGCTCGTGGTGGTGGTGTTAGTGGAGGCAGAGGCAGGAGGAAG
GGGGTGGGGAGGCTGGGATGAGGAGGTGGACCCTTTGGACTGCTGCTGGC
ATGGTGTATCCTCCTTGTCCTCGTCGTCGTCCATGCCAATTTTGTCAAAG
CGGCTGTAATCAACCATTTCCTGTATGGGTGAGTAAGGTGTGACGGTAAA
AAAGAGCGAATGCCGCCGCGAGAGCGAGACCGTCTTGACGAGCTTTGACA
CGTTTCACCGCCCTGCTGCTGCCAAACAATGTTAATCTCACACACACAAC
TGACCCCACCAACCAACAGAGCCAGCCTACGGTAGAGCCATGCCGATGCG
GAGCGAGAGTCCATCATCCTCAGGCCGGGCGCTTGGCATTAACGAACTTG
CCTTGCTCCTGCTTTTGCTGTCAAGGGTCGTCGTAGAGGGATTCTTCTTC
ACAGGGCCGCGCAGTGTAGACCATCTTAAAGACGTACGAGGGTTGCAGCC
GCCCCGCCCGTTTCTACTCCAGACGTCTACGAGCCTGGGAGGTGCCTCTG
CTACGTCCGTCGATGGGTAAGCCCCCTTTTCTTGTCTTGTTTTCGTAGTC
TTTTCTGATGCCTTCCGCTCACTCGCTCACATTTCACACTATCTGTTACA
AATCACATACATGGAGGCTGTTGCGGGACGAGAGTGCCGACGTTACCAAT
GGGGACAGTCGCAGCATTAGTGTAGCGGGACCCACGACAGAGGGCAAGTG
CAGTGGCAGAATCCTCCAAGTCATCACCGATATCGATGATACTGTCAAGT
CCAGCGGCGGGCTGCGTCTCCTCGGGGTAGCCTTGGGAGGGATTGACACC
CAATACAAACGCGGACAGTATTACCCAGGTGCCTTCCAGTTTGCCCTGGA
GCTCTCTCGTTTCGGCGTACCTGAAGGTCGAGATCCTGCACGTGTTGCTG
TACTGACAGCGAGAGCCCGTGAATTCAAATTCGCCCTCGAACTCAAACCC
TCCCACAAAGTTTGCCGGACATATGCCGCTGCTGGGGTTGACAATGGGGT
GGATGGGTGGGGGGTCGGTACGGTGCTGTATGGTAGTGTCAAGGAGTGGG
TGTGTCAGGGTAGGAAGGGTTTAAGGAAGTTTCGCAATTTCGAGGCGTTG
CGGAGAGAGGATCGCTTTGATTTGACGGATTATGTGTTTGTTGGAGATAC
GGGGGAGTTGGATGTGCAGGCGGGTGAGAGCATGATCAGGAAGTACCCCA
CCCGTATCAAGGCCCTCTTCATGCACTACGTCTCTGAAGCCCGTCCCTCC
CCCCCTCCTCCCCGCGATCGCTCCCTGCTTGATGTCCCCGTGATTTATTT
TCAGACCTATGTGGGCGCTGCTGTGAAAGCTGCCGGCCTGGGTTTGCTGG
ACAGAAGAGGGGTGGAGGCAGTAATAGCTCGAGCCCTTGATGAATTGGAG
GGAGGAGGGAAAAAGGGAGAGAAAAAAGGAGGGAGAAAGGCTACGCCGGA
ACAGCTGGCCGATCTGATGGCAGATATTGATCTAGCAAAGAGGACGGTGT
TAATGACCAAGGAGGAGGACGGGGGTACGGGCAAAGGAAAGAGGGAGGGA
GGGGCAGAGGAGGTGCTGGTGTTACTTCGAAAGCTGTTTCGACCGCCGGA
TGTGATAGTGCCGGGGCGAATTCGTGTTCGTAAGTAAGATCTTGTTATAG
GAGGTAGGGAAGGTGTGAGGAAGATAGAGGGGAGAGCATGAGCGCGTGTC
TACTGTGTGATTTCTGGGGAGGTATTTGGAGTGTTGATATATTTTCAGGG
AACATAGGAAGGGAGGAAAAGAATGGAGGAAGGGTGAAAGGCAAGTCTTA
ATAAATGTACATATCAATGTGATCGGTATCACCAGAATCGTGATTAGAAG
CAAAAAAAGGAAGGGAAGGTGGAGCACACTCATTGGACAAGCCCACGGCG
AGGGGAACTTTATGTTGATACGAGTATTAACGAATGGGTAACGCTATATG
TAGCGCGCGGCACG

protein sequence of NO02G03850.2

>NO02G03850.2-protein ID=NO02G03850.2-protein|Name=NO02G03850.2|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPSAHSLTFHTICYKSHTWRLLRDESADVTNGDSRSISVAGPTTEGKCSG
RILQVITDIDDTVKSSGGLRLLGVALGGIDTQYKRGQYYPGAFQFALELS
RFGVPEGRDPARVAVLTARAREFKFALELKPSHKVCRTYAAAGVDNGVDG
WGVGTVLYGSVKEWVCQGRKGLRKFRNFEALRREDRFDLTDYVFVGDTGE
LDVQAGESMIRKYPTRIKALFMHYVSEARPSPPPPRDRSLLDVPVIYFQT
YVGAAVKAAGLGLLDRRGVEAVIARALDELEGGGKKGEKKGGRKATPEQL
ADLMADIDLAKRTVLMTKEEDGGTGKGKREGGAEEVLVLLRKLFRPPDVI
VPGRIRVRK*

mRNA from alignment at chr2:1049770..1052944-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G03850.2 ID=NO02G03850.2|Name=NO02G03850.2|organism=Nannochloropsis oceanica|type=mRNA|length=3175bp|location=Sequence derived from alignment at chr2:1049770..1052944- (Nannochloropsis oceanica)
CCAAGAGGTAAATGCTGTGCTATAGACTATTGTACGTATGTGTGTGAAAT
TGATCGGTTGTCAGTACTTTTGATAGAGTAAGTACATTTGATAAAGCACA
CCATTACCGTGGTGTGGTATGTGTCGAGTGAGTATGGACTATCGTTGTCA
AGAAAAGAAGACACAGAGCGATTAAGATTGACACCAGAGAAAATAAAAGC
ATAAATCACATTATTAAAATGTGATCCCAAAAAGTCTGTACATGTTCTTT
CAGTCACATGCTCAAGTCTCTACGTGTACTTTACGCCACCCAAAAACGTC
TGCGGGTCCGGCACTGCTCCATTGAAATTGGCATTCGAAAAATCAAACCC
GGGGTTCTCCTCCTGAAATCTCTCCAGCATGAGCTGCTTCCTCACGGTTT
CGCTCGTCAAGGGGTCCAACGCGCCCCGCCCGGCCAAGGCGCTGGGCCAG
ACTTCCCCCTTGCTCGCTTTCTGTAGCAAGATATGCAGCTCCCCATCTTC
CAAGGTCCAAAAGCTTTCAGTCGCCTTGACAGACCCAGCAGTTGTCTCGT
CAATGAAAGGATGGGGTGCCCCTTTCAAGCCTAAGGTGAGATGGGAGGGT
GTGATAGTGCAGTACAGCATGCTGGCCTTCACCAACGGTGGCGGAGTGAT
GTAAAGGCTGACGTCTTCCAGCGTTTGCTCCCATTCATAGACAGTCTGGC
CCCCGTGCTCGAACTTGAGCCGGTGCCCTTCTTTGCCCTTGGGTGTGATA
AAAGTGCTGCTCGTGGTGGTGGTGTTAGTGGAGGCAGAGGCAGGAGGAAG
GGGGTGGGGAGGCTGGGATGAGGAGGTGGACCCTTTGGACTGCTGCTGGC
ATGGTGTATCCTCCTTGTCCTCGTCGTCGTCCATGCCAATTTTGTCAAAG
CGGCTGTAATCAACCATTTCCTGTATGGGTGAGTAAGGTGTGACGGTAAA
AAAGAGCGAATGCCGCCGCGAGAGCGAGACCGTCTTGACGAGCTTTGACA
CGTTTCACCGCCCTGCTGCTGCCAAACAATGTTAATCTCACACACACAAC
TGACCCCACCAACCAACAGAGCCAGCCTACGGTAGAGCCATGCCGATGCG
GAGCGAGAGTCCATCATCCTCAGGCCGGGCGCTTGGCATTAACGAACTTG
CCTTGCTCCTGCTTTTGCTGTCAAGGGTCGTCGTAGAGGGATTCTTCTTC
ACAGGGCCGCGCAGTGTAGACCATCTTAAAGACGTACGAGGGTTGCAGCC
GCCCCGCCCGTTTCTACTCCAGACGTCTACGAGCCTGGGAGGTGCCTCTG
CTACGTCCGTCGATGGGTAAGCCCCCTTTTCTTGTCTTGTTTTCGTAGTC
TTTTCTGATGCCTTCCGCTCACTCGCTCACATTTCACACTATCTGTTACA
AATCACATACATGGAGGCTGTTGCGGGACGAGAGTGCCGACGTTACCAAT
GGGGACAGTCGCAGCATTAGTGTAGCGGGACCCACGACAGAGGGCAAGTG
CAGTGGCAGGTACGTTTTTAGGCATAGAAGGCATTTTTCACATTCCCTCC
CCTCCTCCCTTCCCTCTATTTAATCGCTACTCAAACGCCCATCCTCTCAG
AATCCTCCAAGTCATCACCGATATCGATGATACTGTCAAGTCCAGCGGCG
GGCTGCGTCTCCTCGGGGTAGCCTTGGGAGGGATTGACACCCAATACAAA
CGCGGACAGTATTACCCAGGTGCCTTCCAGTTTGCCCTGGAGCTCTCTCG
TTTCGGCGTACCTGAAGGTCGAGATCCTGCACGTGTTGCTGTACTGACAG
CGAGGTGGGTGCTTCAGCCATCTCTCCCACCTACACTTTCCTCCTCTCTC
TTTGTACGAGCCTCTGGAGACATTCCTCTATCAAGCACCCTCACTTAAAT
TCCTCTTTCTCCCCTCCCTAAAAACCAAACACAGAGCCCGTGAATTCAAA
TTCGCCCTCGAACTCAAACCCTCCCACAAAGTTTGCCGGACATATGCCGC
TGCTGGGGTTGACAATGGGGTGGATGGGTGGGGGGTCGGTACGGTGCTGT
ATGGTAGTGTCAAGGAGTGGGTGTGTCAGGGTAGGAAGGGTTTAAGGAAG
TTTCGCAATTTCGAGGCGTTGCGGAGAGAGGATCGCTTTGATTTGACGGA
TTATGTGTTTGTTGGAGATACGGGGGAGTTGGATGTGCAGGCGGGTGAGA
GCATGATCAGGTAGGTGAGAAGGGGAGGGACGGAGAGGGGGAGGGAGGGA
GTGAGTGAGTGAGGGCTGTTTGGGTGGGTGGGTGGAGGAATGAGAGACGT
TTGGTATTTCGTGTGTGCGGCCGTAAAATTTATGTCACATGTATCAGGTA
CGTCATGGCCTGATCAACTCACACACCTACACCCTCCTTCCCTCCGTCAG
GAAGTACCCCACCCGTATCAAGGCCCTCTTCATGCACTACGTCTCTGAAG
CCCGTCCCTCCCCCCCTCCTCCCCGCGATCGCTCCCTGCTTGATGTCCCC
GTGATTTATTTTCAGACCTATGTGGGCGCTGCTGTGAAAGCTGCCGGCCT
GGGTTTGCTGGACAGAAGAGGGGTGGAGGCAGTAATAGCTCGAGCCCTTG
ATGAATTGGAGGGAGGAGGGAAAAAGGGAGAGAAAAAAGGAGGGAGAAAG
GCTACGCCGGAACAGCTGGCCGATCTGATGGCAGATATTGATCTAGCAAA
GAGGACGGTGTTAATGACCAAGGAGGAGGACGGGGGTACGGGCAAAGGAA
AGAGGGAGGGAGGGGCAGAGGAGGTGCTGGTGTTACTTCGAAAGCTGTTT
CGACCGCCGGATGTGATAGTGCCGGGGCGAATTCGTGTTCGTAAGTAAGA
TCTTGTTATAGGAGGTAGGGAAGGTGTGAGGAAGATAGAGGGGAGAGCAT
GAGCGCGTGTCTACTGTGTGATTTCTGGGGAGGTATTTGGAGTGTTGATA
TATTTTCAGGGAACATAGGAAGGGAGGAAAAGAATGGAGGAAGGGTGAAA
GGCAAGTCTTAATAAATGTACATATCAATGTGATCGGTATCACCAGAATC
GTGATTAGAAGCAAAAAAAGGAAGGGAAGGTGGAGCACACTCATTGGACA
AGCCCACGGCGAGGGGAACTTTATGTTGATACGAGTATTAACGAATGGGT
AACGCTATATGTAGCGCGCGGCACG

Coding sequence (CDS) from alignment at chr2:1049770..1052944-

>NO02G03850.2 ID=NO02G03850.2|Name=NO02G03850.2|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr2:1049770..1052944- (Nannochloropsis oceanica)
ATGCCTTCCGCTCACTCGCTCACATTTCACACTATCTGTTACAAATCACA
TACATGGAGGCTGTTGCGGGACGAGAGTGCCGACGTTACCAATGGGGACA
GTCGCAGCATTAGTGTAGCGGGACCCACGACAGAGGGCAAGTGCAGTGGC
AGAATCCTCCAAGTCATCACCGATATCGATGATACTGTCAAGTCCAGCGG
CGGGCTGCGTCTCCTCGGGGTAGCCTTGGGAGGGATTGACACCCAATACA
AACGCGGACAGTATTACCCAGGTGCCTTCCAGTTTGCCCTGGAGCTCTCT
CGTTTCGGCGTACCTGAAGGTCGAGATCCTGCACGTGTTGCTGTACTGAC
AGCGAGAGCCCGTGAATTCAAATTCGCCCTCGAACTCAAACCCTCCCACA
AAGTTTGCCGGACATATGCCGCTGCTGGGGTTGACAATGGGGTGGATGGG
TGGGGGGTCGGTACGGTGCTGTATGGTAGTGTCAAGGAGTGGGTGTGTCA
GGGTAGGAAGGGTTTAAGGAAGTTTCGCAATTTCGAGGCGTTGCGGAGAG
AGGATCGCTTTGATTTGACGGATTATGTGTTTGTTGGAGATACGGGGGAG
TTGGATGTGCAGGCGGGTGAGAGCATGATCAGGAAGTACCCCACCCGTAT
CAAGGCCCTCTTCATGCACTACGTCTCTGAAGCCCGTCCCTCCCCCCCTC
CTCCCCGCGATCGCTCCCTGCTTGATGTCCCCGTGATTTATTTTCAGACC
TATGTGGGCGCTGCTGTGAAAGCTGCCGGCCTGGGTTTGCTGGACAGAAG
AGGGGTGGAGGCAGTAATAGCTCGAGCCCTTGATGAATTGGAGGGAGGAG
GGAAAAAGGGAGAGAAAAAAGGAGGGAGAAAGGCTACGCCGGAACAGCTG
GCCGATCTGATGGCAGATATTGATCTAGCAAAGAGGACGGTGTTAATGAC
CAAGGAGGAGGACGGGGGTACGGGCAAAGGAAAGAGGGAGGGAGGGGCAG
AGGAGGTGCTGGTGTTACTTCGAAAGCTGTTTCGACCGCCGGATGTGATA
GTGCCGGGGCGAATTCGTGTTCGTAAGTAA

Synonyms

Publications