NO02G03800.2, NO02G03800.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03800.2
Unique NameNO02G03800.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1715
Alignment locationchr2:1032295..1034112 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1032295..1034112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03800.2 vs.
Match: EWM30327.1 (coiled-coil domain-containing protein 75 [Nannochloropsis gaditana])

HSP 1 Score: 240.0 bits (611), Expect = 1.000e-59
Identity = 131/257 (50.97%), Postives = 170/257 (66.15%), Query Frame = 0 
Query:   65 KSKAANAEEKLREGMNTPLPQDNVGLRMLKLMGYKEGHGIGKSADGITAPIAVVKKTDRAGLGQAERQSEAHQRLEQWTQARVELLEQCKEDFQVAMSNRFAERRVASNLTKAMKTIETLDTRAGREMSCLWWTSIEEEENKGMDARIRDRRKEGVDEPSNALLATGTETHTVHTQEEAAAAVPQGQTECGGEEEREGLAIVDGKHELWDTLSTSEKLSVATAYLRQEHRYCLFCGHQYGSIDELRKECPGKSEDDH 322
            K+ AA   EKL +G+ TPL ++NVGL+MLKLMG+K G GIGK  DGI  P+A  KK  RAGLG+ ERQ EA ++ E W+QAR+ L+EQ +E FQ AMS+RF++RRVASNL KAMKTIETLD +AGRE SCLWW+S +E+  +     ++   +E VD           E  ++  Q +  AA    Q     E++      VD   ELW TL   EKLS+AT YLR+ H YCL+CGHQY S++ L++ECPG +EDDH
Sbjct:   16 KAGAALVAEKLEKGLQTPLSEENVGLKMLKLMGFKTGLGIGKKEDGIREPLAFAKKRGRAGLGETERQEEAARKREAWSQARIRLIEQRRESFQAAMSSRFSDRRVASNLVKAMKTIETLDVQAGRERSCLWWSSADEQGKEEKRFGLKQGVQESVD---------FKEKPSMRDQNDTVAA---NQMPTMTEDQE---CSVD--FELWQTLKNDEKLSLATLYLRESHSYCLYCGHQYHSVESLKEECPGNNEDDH 255
The following BLAST results are available for this feature:
BLAST of NO02G03800.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30327.11.000e-5950.97coiled-coil domain-containing protein 75 [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03800NO02G03800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03800.2NO02G03800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03800.2.cds1NO02G03800.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03800.2.cds2NO02G03800.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03800.2 ID=NO02G03800.2|Name=NO02G03800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp
AACACCTTTATGAGAGCCTTCTTGGCCGAGTTGACGTCCCCCTCTTCTTC
ATTTCCACAATGTGGACATTTTTAGACTTTGGTGTTCCATAGCATTCTGT
TCGCCTGACCACAAGAGCTGCATGTTTTACTCGTTCCATGCTCCTCGAGA
TCCAAAAACGACTTTTCCACACGCCTCAGCCTTCAGGGCCGCCCAAGAAA
CGCGTTGGCGCGCCGGCTCACTGCCCCGTGTCGTGGGGGTAAACGAGGTC
ACGGTCGGCCAGAAATCGAGGCCTTCGAGGTGCGAGGACGCTTGCACCCA
CGCAAGGGCTTCGTTACTTTGCGGCTCGAGTTACCGTTAACACGCTCTAC
TAACTCGTGTACGAAGACTGCCGAAGTCATGGAGTGCGCCACGCTCCGTA
CGGTCCGTCGCACCTTTTTCACCATGACTCTCACCTTCATATTACAGACA
GACACAGCCACACATACACAGAAAACCATAAACAGACAAACGCAAAGGCA
GGCATGTATACAGACACACATACATGCAGACACAGACACGCGCTGATACA
AACACAGAGACAGACACACAATCCCCTCTCCCAAACCTCCCCCAAGACAG
ACACAGACTATCACAGAATAGAGAATAGAATAACACGTCAAGAACGAGTC
CAGTGAGCACATGAATCGTTTTAAGGAGACAAGGAAGCAGGATCAGCTGG
AGGTGGCAGAAAAGCAGAGTAGGAGCCTTCTTCCCAATGGCTACCATGAT
GATGAGGACTACTTGAGCGGTACGTTTGTTGACCAGCAGCCGACCACAAA
CATTGGTAGCAAGAGGGCTGTTCAGCCTCGGCCTTCTAAAGCAACGTCCA
AAAAATCTAAGGCAGCAAATGCGGAGGAGAAATTGCGAGAGGGAATGAAT
ACACCATTGCCTCAGGACAATGTAGGGTTGCGGATGCTGAAATTGATGGG
CTACAAGGAAGGCCATGGTATTGGCAAGAGCGCAGACGGTATCACGGCGC
CAATTGCCGTGGTAAAGAAGACAGACCGCGCGGGGCTTGGCCAGGCAGAG
CGCCAGAGCGAAGCGCACCAGCGGCTGGAGCAATGGACACAGGCGCGGGT
TGAACTTCTTGAGCAATGCAAAGAAGACTTCCAGGTGGCCATGTCTAATC
GGTTTGCGGAGCGGCGCGTTGCGTCGAATTTGACAAAGGCGATGAAGACA
ATCGAAACTTTAGATACGCGGGCGGGTCGGGAGATGTCCTGTTTGTGGTG
GACCAGCATAGAGGAGGAGGAAAACAAGGGGATGGATGCGAGGATCAGAG
ATCGAAGGAAGGAGGGGGTGGACGAGCCATCTAACGCCCTATTGGCCACG
GGAACAGAAACACACACAGTGCATACTCAAGAGGAGGCGGCCGCTGCCGT
GCCGCAGGGACAAACGGAATGTGGAGGAGAAGAAGAAAGAGAAGGCTTAG
CTATAGTAGATGGCAAGCACGAACTTTGGGACACGTTGAGCACATCAGAG
AAATTAAGCGTGGCGACTGCTTACTTGCGGCAGGAGCACCGCTATTGTCT
CTTTTGCGGACATCAGTACGGTAGCATAGACGAATTACGAAAAGAATGCC
CGGGAAAAAGCGAAGATGACCACTAATTGACAAGCAAGGCTGTTCATGCG
ACCGATAGACCAATGTGAACAAAACGGGGGGAATGTACAGTAAATGCCCG
GCTTGATTACTGACA
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protein sequence of NO02G03800.2

>NO02G03800.2-protein ID=NO02G03800.2-protein|Name=NO02G03800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MNRFKETRKQDQLEVAEKQSRSLLPNGYHDDEDYLSGTFVDQQPTTNIGS
KRAVQPRPSKATSKKSKAANAEEKLREGMNTPLPQDNVGLRMLKLMGYKE
GHGIGKSADGITAPIAVVKKTDRAGLGQAERQSEAHQRLEQWTQARVELL
EQCKEDFQVAMSNRFAERRVASNLTKAMKTIETLDTRAGREMSCLWWTSI
EEEENKGMDARIRDRRKEGVDEPSNALLATGTETHTVHTQEEAAAAVPQG
QTECGGEEEREGLAIVDGKHELWDTLSTSEKLSVATAYLRQEHRYCLFCG
HQYGSIDELRKECPGKSEDDH*
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mRNA from alignment at chr2:1032295..1034112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03800.2 ID=NO02G03800.2|Name=NO02G03800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at chr2:1032295..1034112- (Nannochloropsis oceanica)
AACACCTTTATGAGAGCCTTCTTGGCCGAGTTGACGTCCCCCTCTTCTTC
ATTTCCACAATGTGGACATTTTTAGACTTTGGTGTTCCATAGCATTCTGT
TCGCCTGACCACAAGAGCTGCATGTTTTACTCGTTCCATGCTCCTCGAGA
TCCAAAAACGACTTTTCCACACGCCTCAGCCTTCAGGGCCGCCCAAGAAA
CGCGTTGGCGCGCCGGCTCACTGCCCCGTGTCGTGGGGGTAAACGAGGTC
ACGGTCGGCCAGAAATCGAGGCCTTCGAGGTGCGAGGACGCTTGCACCCA
CGCAAGGGCTTCGTTACTTTGCGGCTCGAGTTACCGTTAACACGCTCTAC
TAACTCGTGTACGAAGACTGCCGAAGTCATGGAGTGCGCCACGCTCCGTA
CGGTCCGTCGCACCTTTTTCACCATGACTCTCACCTTCATATTACAGACA
GACACAGCCACACATACACAGAAAACCATAAACAGACAAACGCAAAGGCA
GGCATGTATACAGACACACATACATGCAGACACAGACACGCGCTGATACA
AACACAGAGACAGACACACAATCCCCTCTCCCAAACCTCCCCCAAGACAG
ACACAGACTATCACAGAATAGAGAATAGAATAACACGTCAAGAACGAGTC
CAGTGAGCACATGAATCGTTTTAAGGAGACAAGGAAGCAGGATCAGCTGG
AGGTGGCAGAAAAGCAGAGTAGGAGCCTTCTTCCCAATGGCTACCATGAT
GATGAGGACTACTTGAGCGGTACGTTTGTTGACCAGCAGCCGACCACAAA
CATTGGTAGCAAGAGGGCTGTTCAGCCTCGGCCTTCTAAAGCAACGTCCA
AAAAATCTAAGGCAGCAAATGCGGAGGAGAAATTGCGAGAGGGAATGAAT
ACACCATTGCCTCAGGTAATGATTGTCCTCGAGACGTGCCGCTCGCTTCT
CCAGGCCATCTGTCCGCCCTCCTCAACTCTTCTCATGTTCGCTCTACACC
CCTCCTTTACCCTTACAGGACAATGTAGGGTTGCGGATGCTGAAATTGAT
GGGCTACAAGGAAGGCCATGGTATTGGCAAGAGCGCAGACGGTATCACGG
CGCCAATTGCCGTGGTAAAGAAGACAGACCGCGCGGGGCTTGGCCAGGCA
GAGCGCCAGAGCGAAGCGCACCAGCGGCTGGAGCAATGGACACAGGCGCG
GGTTGAACTTCTTGAGCAATGCAAAGAAGACTTCCAGGTGGCCATGTCTA
ATCGGTTTGCGGAGCGGCGCGTTGCGTCGAATTTGACAAAGGCGATGAAG
ACAATCGAAACTTTAGATACGCGGGCGGGTCGGGAGATGTCCTGTTTGTG
GTGGACCAGCATAGAGGAGGAGGAAAACAAGGGGATGGATGCGAGGATCA
GAGATCGAAGGAAGGAGGGGGTGGACGAGCCATCTAACGCCCTATTGGCC
ACGGGAACAGAAACACACACAGTGCATACTCAAGAGGAGGCGGCCGCTGC
CGTGCCGCAGGGACAAACGGAATGTGGAGGAGAAGAAGAAAGAGAAGGCT
TAGCTATAGTAGATGGCAAGCACGAACTTTGGGACACGTTGAGCACATCA
GAGAAATTAAGCGTGGCGACTGCTTACTTGCGGCAGGAGCACCGCTATTG
TCTCTTTTGCGGACATCAGTACGGTAGCATAGACGAATTACGAAAAGAAT
GCCCGGGAAAAAGCGAAGATGACCACTAATTGACAAGCAAGGCTGTTCAT
GCGACCGATAGACCAATGTGAACAAAACGGGGGGAATGTACAGTAAATGC
CCGGCTTGATTACTGACA
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Coding sequence (CDS) from alignment at chr2:1032295..1034112-

>NO02G03800.2 ID=NO02G03800.2|Name=NO02G03800.2|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr2:1032295..1034112- (Nannochloropsis oceanica)
ATGAATCGTTTTAAGGAGACAAGGAAGCAGGATCAGCTGGAGGTGGCAGA
AAAGCAGAGTAGGAGCCTTCTTCCCAATGGCTACCATGATGATGAGGACT
ACTTGAGCGGTACGTTTGTTGACCAGCAGCCGACCACAAACATTGGTAGC
AAGAGGGCTGTTCAGCCTCGGCCTTCTAAAGCAACGTCCAAAAAATCTAA
GGCAGCAAATGCGGAGGAGAAATTGCGAGAGGGAATGAATACACCATTGC
CTCAGGACAATGTAGGGTTGCGGATGCTGAAATTGATGGGCTACAAGGAA
GGCCATGGTATTGGCAAGAGCGCAGACGGTATCACGGCGCCAATTGCCGT
GGTAAAGAAGACAGACCGCGCGGGGCTTGGCCAGGCAGAGCGCCAGAGCG
AAGCGCACCAGCGGCTGGAGCAATGGACACAGGCGCGGGTTGAACTTCTT
GAGCAATGCAAAGAAGACTTCCAGGTGGCCATGTCTAATCGGTTTGCGGA
GCGGCGCGTTGCGTCGAATTTGACAAAGGCGATGAAGACAATCGAAACTT
TAGATACGCGGGCGGGTCGGGAGATGTCCTGTTTGTGGTGGACCAGCATA
GAGGAGGAGGAAAACAAGGGGATGGATGCGAGGATCAGAGATCGAAGGAA
GGAGGGGGTGGACGAGCCATCTAACGCCCTATTGGCCACGGGAACAGAAA
CACACACAGTGCATACTCAAGAGGAGGCGGCCGCTGCCGTGCCGCAGGGA
CAAACGGAATGTGGAGGAGAAGAAGAAAGAGAAGGCTTAGCTATAGTAGA
TGGCAAGCACGAACTTTGGGACACGTTGAGCACATCAGAGAAATTAAGCG
TGGCGACTGCTTACTTGCGGCAGGAGCACCGCTATTGTCTCTTTTGCGGA
CATCAGTACGGTAGCATAGACGAATTACGAAAAGAATGCCCGGGAAAAAG
CGAAGATGACCACTAA
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Synonyms
Publications