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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1002780..1004644 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03720.1 vs.
Match: AGK85255.1 (vacuolar ATPase subunit A [Fucus vesiculosus]) HSP 1 Score: 914.4 bits (2362), Expect = 1.700e-262 Identity = 458/619 (73.99%), Postives = 520/619 (84.01%), Query Frame = 0
Query: 1 MAGVVVDDGVIESDYGFIHRVSGPLVIADNMQGAAMYELVRVGHQMLVGEIIKLEGTTASIQVYEDTAGLTVGDPVLRKRQPLSLELGPGIMGTIFDGIQRPLEDIFRRDQNVYIPRGADIPSLDPTKQWQYTPVSGLREGQE-------GVWYGGDKKDSYN--------------------------VEETVLEVENETTKQVHKLKLSHFWPVRRPRPVVAKLPGKSALTTGLRVVDAIFPSVQGGTVAVPGAFGCGKTVISQSLSKFSNSDAIVYVGCGERGNEMAEVLSEFPELKLDINGKEVGIMNRTCLVANTSNMPVAAREASIYTGITLAEYLRDMGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKALGSPEREGTVTVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSVNWLISYTKYMRVLEPFFNGIDPQYSELQKRTREILQVEENLSEIVQLVGKESLSEDQKVSMEIARIIREDFLQQNAFSSYDYTCPINKSIGMLRAIITLYNCSQKAIADSPANQKVTWAYIKTALAPVIQKVIEGKFQEPKNSPEQLQAYYNDVATEVELAFQTLS 587
M+G+V+DDGV ESDYG++ RVSGPLVIA++M GAAMYELVRVGHQ LVGEII+LEG TASIQVYEDT+GLTVGDPVLR+RQPLS+ELGPGIMGTIFDGIQRPLEDI R+ +V++PRG D+P LD K W+++P++ REGQ G Y + + + V +TVLEVENE+T +V +LKLSHFWPVR+PRPV+ KLPG SALTTG+RV+D IFPSVQGGT AVPGAFGCGKTVISQSLSKFSNSDAIVYVGCGERGNEMAEVL+EFPEL +D+ GKE+GIM RT LVANTSNMPVAAREASIYTGITLAEY RDMGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGR +GSP REGTVTVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPS+NWLISYTKYMRVLEPFFNG D YSEL+ R R+ILQ E++LSEIVQLVG++SLSEDQKV +EIAR+IREDFLQQNAF+ YDYTCP+ KS+GML+ IIT YNC+QKAIADSPA+ KVTWA+IKT +AP++QKV++GKF +PK EQ+ Y E+E+AFQ LS
Sbjct: 1 MSGLVIDDGVKESDYGYVLRVSGPLVIAESMSGAAMYELVRVGHQKLVGEIIRLEGDTASIQVYEDTSGLTVGDPVLRRRQPLSVELGPGIMGTIFDGIQRPLEDIANREDSVFVPRGVDVPCLDQDKDWEFSPIN-FREGQPISGGDVFGTVYENELINDHKVMCPPNIYGTVVKIYGSGGDRRDRFKVSDTVLEVENESTGKVTELKLSHFWPVRKPRPVLEKLPGNSALTTGVRVIDTIFPSVQGGTCAVPGAFGCGKTVISQSLSKFSNSDAIVYVGCGERGNEMAEVLNEFPELTIDVKGKEIGIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRASCIGSPGREGTVTVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYTKYMRVLEPFFNGYDSNYSELRTRCRDILQQEDSLSEIVQLVGRDSLSEDQKVVLEIARVIREDFLQQNAFTDYDYTCPLYKSLGMLKMIITFYNCTQKAIADSPADSKVTWAHIKTTMAPLLQKVVDGKFMDPKMPREQMDMEYGKTCEEIEVAFQNLS 618
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03720.1 ID=NO02G03720.1|Name=NO02G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
ATGGCGGGCGTGGTGGTGGACGATGGTGTGATCGAATCCGACTATGGCTT
CATTCACCGCGTATCGGGCCCGCTGGTCATTGCCGACAACATGCAAGGTG
CGGCCATGTACGAGCTAGTGCGTGTGGGTCATCAGATGCTGGTCGGAGAG
ATCATCAAGCTTGAGGGCACCACAGCTTCCATCCAGGTTTACGAGGACAC
GGCTGGCTTGACTGTGGGTGACCCTGTCCTCCGGAAGCGCCAGCCCCTGT
CGCTGGAGCTTGGGCCTGGCATCATGGGCACGATCTTCGACGGGATTCAG
CGGCCTTTGGAAGACATTTTCCGGCGTGACCAGAATGTGTACATCCCGCG
CGGGGCGGATATCCCTTCCTTGGACCCCACCAAGCAGTGGCAGTACACCC
CTGTGTCGGGCCTCCGCGAGGGTCAAGAAGGTGTATGGTATGGGGGGGAC
AAGAAGGATTCTTATAACGTCGAGGAAACGGTGCTGGAGGTGGAGAACGA
GACGACCAAGCAAGTGCACAAGCTCAAGCTCTCTCACTTCTGGCCCGTCC
GTCGTCCCCGCCCCGTCGTGGCCAAGCTTCCGGGTAAGAGTGCTTTAACT
ACTGGCTTGCGCGTGGTCGATGCCATCTTCCCCTCTGTTCAGGGAGGGAC
GGTGGCGGTGCCTGGTGCGTTTGGGTGCGGCAAGACAGTCATTTCTCAGT
CCCTCTCCAAGTTTTCCAATTCGGACGCCATTGTGTATGTCGGTTGCGGG
GAGCGCGGGAATGAGATGGCGGAGGTGTTGTCGGAATTCCCGGAGTTGAA
ATTGGATATTAATGGGAAAGAGGTCGGGATCATGAATCGCACCTGCTTGG
TAGCTAACACGTCTAACATGCCCGTGGCAGCTCGAGAAGCCTCGATTTAT
ACTGGTATTACATTGGCGGAGTACTTGCGTGATATGGGCATGAATGTGTC
GATGATGGCTGATTCCACCTCGCGATGGGCGGAGGCGTTGCGTGAGATTT
CGGGGCGCTTGGGGGAGATGCCTGCCGATTCCGGGTATCCTGCTTATTTG
GGTGCGCGTTTGGCTGCTTTCTATGAACGTGCTGGTCGCGTGAAGGCGCT
CGGCTCGCCTGAGAGGGAGGGGACAGTGACGGTGGTGGGAGCTGTGTCAC
CCCCCGGTGGTGATTTCTCAGATCCCGTCACGGCGGCTACTTTGTCAATT
GTTCAGGTGTTCTGGGGATTGGACAAAAAATTGGCGCAACGCAAGCATTT
CCCTTCGGTGAATTGGCTGATTTCATACACGAAGTATATGCGCGTCCTCG
AACCGTTCTTTAACGGCATTGACCCTCAGTACTCGGAGCTTCAGAAGCGG
ACGCGTGAGATCCTGCAGGTGGAGGAGAATCTGTCGGAAATCGTGCAGCT
GGTGGGAAAAGAGTCTCTGTCTGAAGACCAAAAAGTTTCCATGGAGATCG
CGCGTATCATCCGCGAGGATTTCTTGCAGCAAAACGCGTTCTCGTCTTAC
GATTACACCTGCCCGATTAATAAGTCGATTGGGATGCTCCGGGCCATTAT
CACTCTCTACAACTGCTCTCAGAAGGCGATTGCTGATTCCCCGGCGAACC
AGAAAGTGACTTGGGCCTACATCAAGACGGCCTTGGCTCCCGTTATTCAG
AAAGTGATTGAGGGCAAGTTCCAAGAGCCCAAGAATTCGCCTGAGCAACT
GCAGGCCTACTATAATGATGTGGCGACGGAGGTGGAATTGGCGTTCCAGA
CGCTATCTGGGCCGTAG back to topprotein sequence of NO02G03720.1 >NO02G03720.1-protein ID=NO02G03720.1-protein|Name=NO02G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp
MAGVVVDDGVIESDYGFIHRVSGPLVIADNMQGAAMYELVRVGHQMLVGE
IIKLEGTTASIQVYEDTAGLTVGDPVLRKRQPLSLELGPGIMGTIFDGIQ
RPLEDIFRRDQNVYIPRGADIPSLDPTKQWQYTPVSGLREGQEGVWYGGD
KKDSYNVEETVLEVENETTKQVHKLKLSHFWPVRRPRPVVAKLPGKSALT
TGLRVVDAIFPSVQGGTVAVPGAFGCGKTVISQSLSKFSNSDAIVYVGCG
ERGNEMAEVLSEFPELKLDINGKEVGIMNRTCLVANTSNMPVAAREASIY
TGITLAEYLRDMGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYL
GARLAAFYERAGRVKALGSPEREGTVTVVGAVSPPGGDFSDPVTAATLSI
VQVFWGLDKKLAQRKHFPSVNWLISYTKYMRVLEPFFNGIDPQYSELQKR
TREILQVEENLSEIVQLVGKESLSEDQKVSMEIARIIREDFLQQNAFSSY
DYTCPINKSIGMLRAIITLYNCSQKAIADSPANQKVTWAYIKTALAPVIQ
KVIEGKFQEPKNSPEQLQAYYNDVATEVELAFQTLSGP* back to topmRNA from alignment at chr2:1002780..1004644- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03720.1 ID=NO02G03720.1|Name=NO02G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at chr2:1002780..1004644- (Nannochloropsis oceanica)
ATGGCGGGCGTGGTGGTGGACGATGGTGTGATCGAATCCGACTATGGCTT
CATTCACCGCGTATCGGGCCCGCTGGTCATTGCCGACAACATGCAAGGTG
CGGCCATGTACGAGCTAGTGCGTGTGGGTCATCAGATGCTGGTCGGAGAG
ATCATCAAGCTTGAGGGCACCACAGCTTCCATCCAGGTTTACGAGGACAC
GGCTGGCTTGACTGTGGGTGACCCTGTCCTCCGGAAGCGCCAGCCCCTGT
CGCTGGAGCTTGGGCCTGGCATCATGGGCACGATCTTCGACGGGATTCAG
CGGCCTTTGGAAGACATTTTCCGGCGTGACCAGAATGTGTACATCCCGCG
CGGGGCGGATATCCCTTCCTTGGACCCCACCAAGCAGTGGCAGTACACCC
CTGTGTCGGGCCTCCGCGAGGGTATGGCCTTATCCGGTGGCGACATTTTC
GGGACCGTCTACGAGAACGAGATCATGACCTCGCACAAGATTATGGTCCC
TCCCAATATTTACGGGAAGGTCAAGAAGGTGTATGGTATGGGGGGGACAA
GAAGGATTCTTATAACGTCGAGGAAACGGTGCTGGAGGTGGAGAACGAGA
CGACCAAGCAAGTGCACAAGCTCAAGCTCTCTCACTTCTGGCCCGTCCGT
CGTCCCCGCCCCGTCGTGGCCAAGCTTCCGGGTAAGAGTGCTTTAACTAC
TGGCTTGCGCGTGGTCGATGCCATCTTCCCCTCTGTTCAGGGAGGGACGG
TGGCGGTGCCTGGTGCGTTTGGGTGCGGCAAGACAGTCATTTCTCAGTCC
CTCTCCAAGTTTTCCAATTCGGACGCCATTGTGTATGTCGGTTGCGGGGA
GCGCGGGAATGAGATGGCGGAGGTGTTGTCGGAATTCCCGGAGTTGAAAT
TGGATATTAATGGGAAAGAGGTCGGGATCATGAATCGCACCTGCTTGGTA
GCTAACACGTCTAACATGCCCGTGGCAGCTCGAGAAGCCTCGATTTATAC
TGGTATTACATTGGCGGAGTACTTGCGTGATATGGGCATGAATGTGTCGA
TGATGGCTGATTCCACCTCGCGATGGGCGGAGGCGTTGCGTGAGATTTCG
GGGCGCTTGGGGGAGATGCCTGCCGATTCCGGGTATCCTGCTTATTTGGG
TGCGCGTTTGGCTGCTTTCTATGAACGTGCTGGTCGCGTGAAGGCGCTCG
GCTCGCCTGAGAGGGAGGGGACAGTGACGGTGGTGGGAGCTGTGTCACCC
CCCGGTGGTGATTTCTCAGATCCCGTCACGGCGGCTACTTTGTCAATTGT
TCAGGTGTTCTGGGGATTGGACAAAAAATTGGCGCAACGCAAGCATTTCC
CTTCGGTGAATTGGCTGATTTCATACACGAAGTATATGCGCGTCCTCGAA
CCGTTCTTTAACGGCATTGACCCTCAGTACTCGGAGCTTCAGAAGCGGAC
GCGTGAGATCCTGCAGGTGGAGGAGAATCTGTCGGAAATCGTGCAGCTGG
TGGGAAAAGAGTCTCTGTCTGAAGACCAAAAAGTTTCCATGGAGATCGCG
CGTATCATCCGCGAGGATTTCTTGCAGCAAAACGCGTTCTCGTCTTACGA
TTACACCTGCCCGATTAATAAGTCGATTGGGATGCTCCGGGCCATTATCA
CTCTCTACAACTGCTCTCAGAAGGCGATTGCTGATTCCCCGGCGAACCAG
AAAGTGACTTGGGCCTACATCAAGACGGCCTTGGCTCCCGTTATTCAGAA
AGTGATTGAGGGCAAGTTCCAAGAGCCCAAGAATTCGCCTGAGCAACTGC
AGGCCTACTATAATGATGTGGCGACGGAGGTGGAATTGGCGTTCCAGACG
CTATCTGGGCCGTAG back to topCoding sequence (CDS) from alignment at chr2:1002780..1004644- >NO02G03720.1 ID=NO02G03720.1|Name=NO02G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=1767bp|location=Sequence derived from alignment at chr2:1002780..1004644- (Nannochloropsis oceanica)
ATGGCGGGCGTGGTGGTGGACGATGGTGTGATCGAATCCGACTATGGCTT
CATTCACCGCGTATCGGGCCCGCTGGTCATTGCCGACAACATGCAAGGTG
CGGCCATGTACGAGCTAGTGCGTGTGGGTCATCAGATGCTGGTCGGAGAG
ATCATCAAGCTTGAGGGCACCACAGCTTCCATCCAGGTTTACGAGGACAC
GGCTGGCTTGACTGTGGGTGACCCTGTCCTCCGGAAGCGCCAGCCCCTGT
CGCTGGAGCTTGGGCCTGGCATCATGGGCACGATCTTCGACGGGATTCAG
CGGCCTTTGGAAGACATTTTCCGGCGTGACCAGAATGTGTACATCCCGCG
CGGGGCGGATATCCCTTCCTTGGACCCCACCAAGCAGTGGCAGTACACCC
CTGTGTCGGGCCTCCGCGAGGGTCAAGAAGGTGTATGGTATGGGGGGGAC
AAGAAGGATTCTTATAACGTCGAGGAAACGGTGCTGGAGGTGGAGAACGA
GACGACCAAGCAAGTGCACAAGCTCAAGCTCTCTCACTTCTGGCCCGTCC
GTCGTCCCCGCCCCGTCGTGGCCAAGCTTCCGGGTAAGAGTGCTTTAACT
ACTGGCTTGCGCGTGGTCGATGCCATCTTCCCCTCTGTTCAGGGAGGGAC
GGTGGCGGTGCCTGGTGCGTTTGGGTGCGGCAAGACAGTCATTTCTCAGT
CCCTCTCCAAGTTTTCCAATTCGGACGCCATTGTGTATGTCGGTTGCGGG
GAGCGCGGGAATGAGATGGCGGAGGTGTTGTCGGAATTCCCGGAGTTGAA
ATTGGATATTAATGGGAAAGAGGTCGGGATCATGAATCGCACCTGCTTGG
TAGCTAACACGTCTAACATGCCCGTGGCAGCTCGAGAAGCCTCGATTTAT
ACTGGTATTACATTGGCGGAGTACTTGCGTGATATGGGCATGAATGTGTC
GATGATGGCTGATTCCACCTCGCGATGGGCGGAGGCGTTGCGTGAGATTT
CGGGGCGCTTGGGGGAGATGCCTGCCGATTCCGGGTATCCTGCTTATTTG
GGTGCGCGTTTGGCTGCTTTCTATGAACGTGCTGGTCGCGTGAAGGCGCT
CGGCTCGCCTGAGAGGGAGGGGACAGTGACGGTGGTGGGAGCTGTGTCAC
CCCCCGGTGGTGATTTCTCAGATCCCGTCACGGCGGCTACTTTGTCAATT
GTTCAGGTGTTCTGGGGATTGGACAAAAAATTGGCGCAACGCAAGCATTT
CCCTTCGGTGAATTGGCTGATTTCATACACGAAGTATATGCGCGTCCTCG
AACCGTTCTTTAACGGCATTGACCCTCAGTACTCGGAGCTTCAGAAGCGG
ACGCGTGAGATCCTGCAGGTGGAGGAGAATCTGTCGGAAATCGTGCAGCT
GGTGGGAAAAGAGTCTCTGTCTGAAGACCAAAAAGTTTCCATGGAGATCG
CGCGTATCATCCGCGAGGATTTCTTGCAGCAAAACGCGTTCTCGTCTTAC
GATTACACCTGCCCGATTAATAAGTCGATTGGGATGCTCCGGGCCATTAT
CACTCTCTACAACTGCTCTCAGAAGGCGATTGCTGATTCCCCGGCGAACC
AGAAAGTGACTTGGGCCTACATCAAGACGGCCTTGGCTCCCGTTATTCAG
AAAGTGATTGAGGGCAAGTTCCAAGAGCCCAAGAATTCGCCTGAGCAACT
GCAGGCCTACTATAATGATGTGGCGACGGAGGTGGAATTGGCGTTCCAGA
CGCTATCTGGGCCGTAG back to top
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