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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:996892..999535 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03700.1 vs.
Match: EWM30325.1 (ribophorin ii family protein [Nannochloropsis gaditana]) HSP 1 Score: 703.7 bits (1815), Expect = 5.200e-199 Identity = 382/647 (59.04%), Postives = 469/647 (72.49%), Query Frame = 0
Query: 3 SPVIASLMALAVMAVDQASAQVDSYLSEADMQRYQGIANAGMASNTPEAIYFGTKLSKALGGNISGVCATASEMIVGAPGDLAAVGYGLGALREGGCEVSLDGAASQVTATLKAGWKAENGLFESKWLVLMADSALGGGKVLENMDAAMKNLNKHRSEDGFVRASLEEKMGGSTDGTFLLLEAVAATKVTSKGIKKTLDKATQLLPGAGEGVEGGADPGADATLLPVLVKALAALGEEGLSMTSEQGGLIAKQLLKMKGTGSAKGAYKVLTALQTLVGSFADAAPVAVVLSMPVIKVGDGLKVDVRTLLGKPAEGTYGNVEVEKVGVGAAQEVESMAGQVLKTSGRSGTFEGTTAGLEMGLYDVVLKVGEKLEGVKRSLVVQGEAKLTNVEVGVSPTRAHSDGRIYPAPLRAGEVKASSVEGEYISASFTVESTMAPQQAFLKLTHLDTGSEAIYAAKRGGGTADAWAFIAVVSLVDDVEFVFGHRSGEYQLSLLVGDVSLEMPSEQDLGTMSLAFPPKPKAHYALYRKPLQWDSDTALAPLPEIYHQFRRPEKRPNPVLPAAFTTLIALALAMFLIYLPRVGANLDGLPSAGAALVWNVAWVGCLCAVILLFTAYWVHLKGMTTLKLLLPLGLTTVLVGHRAFVSK 650
SP + ++ L + ++Q +AQVDS+ S+AD +RY GIA A + S +PE ++FGTKLSKALGG+IS VC +A +I P DL V YG+GAL+E CEVSL A ++ TLK+GW AE G F K L L+AD ALGGGK+LEN++ A+KN+NKHRSEDG V + E STDGTF LLE +AATKVTSKGIKKTL++A LLPGA EG +G D GADATLL L A+A G GLS+T QG +A+ LLKMKGT SAKGAYKV AL+TL F DAAP A+VL+ PVI+ G +V+ R +LG G G VE+EKV V Q +S+ L+ SG G FE T G +G+Y++ LKVG K + VKR LVVQ A L N+EVGVSP+RAH DG++Y PLR G+VKAS++EGEY+S SFTV + PQQAF K T+L T SE ++AAKR G + A +F+AVVSL D+V+ FGHRSGEYQLSL+VGDV + P EQDLG ++L F KP +ALYRKPL W+SDTAL+PLPEI+HQFR+PE+RPN VLPA FT L+AL L F YLPRVGANL+G PS G AL WN+AW+ CL VI LFTAYW+ LKGMTTLKLL PLG+TT+LVGHRAFV K
Sbjct: 6 SPPVLAIFFLVALTLNQVTAQVDSFFSKADFERYHGIAKAALESRSPETVFFGTKLSKALGGDISSVCTSAVGLISDNPDDLETVAYGMGALKEASCEVSLGAAETRAMKTLKSGWGAEGGSFRCKRLTLLADLALGGGKILENVETAVKNINKHRSEDGSVLSLPEGMSDESTDGTFQLLEIIAATKVTSKGIKKTLERAADLLPGA-EGSDGEVDAGADATLLSALATAVADAGGPGLSVTPAQGEALARILLKMKGTASAKGAYKVFAALRTLATKFPDAAPEALVLATPVIEEGAVFRVECRNILGGEISGRSGGVELEKV-VALGQAADSVTPPRLEGSG--GAFEATFTGSRVGVYELSLKVGGK-DAVKRFLVVQAAASLMNIEVGVSPSRAHLDGKLYQVPLRGGQVKASALEGEYVSVSFTVAAAAIPQQAFFKFTNLATNSEILFAAKRSGIRSGAGSFVAVVSLADEVQAAFGHRSGEYQLSLVVGDVGFDKPLEQDLGALNLTFSSKPPVSHALYRKPLLWESDTALSPLPEIHHQFRQPERRPNAVLPAVFTFLVALVLTAFFRYLPRVGANLNGFPSRGMALFWNIAWLVCLLMVIFLFTAYWMFLKGMTTLKLLFPLGVTTLLVGHRAFVGK 647
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03700.1 ID=NO02G03700.1|Name=NO02G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2402bp
CAGGAAGCAGCGGCGGGTGCCAGGACATACAACACAAGGAGCAAATCAGC
TCGACCACATCCGCAAGCAACACTGCGCTTCATTTAAACCATGCCTAGTC
CTGTCATCGCCTCCTTAATGGCTCTGGCGGTCATGGCCGTGGACCAGGCC
AGCGCGCAGGTGGACTCATACCTGTCTGAGGCGGATATGCAGCGTTACCA
AGGCATTGCAAATGCCGGCATGGCGAGCAATACTCCCGAAGCCATCTATT
TTGGCACAAAGCTGAGCAAAGCGCTTGGAGGTAATATCAGCGGGGTGTGT
GCGACAGCGTCGGAAATGATCGTGGGCGCGCCCGGCGACTTGGCGGCCGT
TGGGTACGGATTGGGCGCGCTACGTGAAGGCGGTTGCGAGGTTTCTTTGG
ATGGGGCGGCATCACAGGTCACGGCTACGCTTAAAGCCGGGTGGAAGGCA
GAGAACGGGTTGTTTGAAAGTAAATGGTTGGTTTTGATGGCAGACTCGGC
GTTGGGTGGGGGCAAAGTTCTGGAGAATATGGATGCGGCGATGAAGAATT
TGAATAAGCACAGGTCCGAAGATGGGTTTGTGCGGGCGTCGCTGGAGGAG
AAGATGGGGGGAAGCACTGACGGCACTTTTCTCCTTTTGGAAGCTGTGGC
GGCGACAAAAGTCACGTCGAAAGGGATAAAGAAAACATTGGATAAGGCCA
CGCAGCTCCTGCCGGGGGCGGGGGAAGGTGTGGAGGGAGGGGCTGACCCG
GGGGCAGATGCTACGTTGTTGCCTGTTTTAGTCAAAGCGCTGGCGGCTTT
GGGTGAGGAAGGTCTGAGCATGACCTCTGAGCAGGGGGGCTTGATCGCAA
AACAGTTGCTGAAGATGAAGGGGACGGGGTCGGCGAAAGGCGCGTATAAA
GTGTTGACGGCGTTGCAGACCCTAGTGGGCTCATTCGCTGATGCCGCGCC
TGTGGCTGTTGTGCTGTCAATGCCCGTCATCAAGGTGGGGGATGGGCTGA
AAGTTGATGTTCGGACTCTGTTGGGGAAGCCGGCGGAGGGGACATACGGA
AATGTGGAGGTGGAGAAGGTGGGAGTGGGGGCGGCACAGGAGGTTGAGTC
GATGGCGGGCCAGGTGCTCAAGACTTCGGGGCGCAGTGGAACGTTTGAAG
GGACTACGGCTGGTTTGGAGATGGGGTTGTACGATGTGGTGTTGAAGGTA
GGGGAGAAGCTGGAGGGGGTCAAGCGATCGTTGGTTGTACAGGGTGAAGC
CAAGTTGACTAATGTGGAGGTGGGCGTGTCCCCAACTCGTGCTCATTCGG
ATGGGAGGATTTACCCGGCTCCTTTGAGGGCAGGGGAGGTGAAGGCATCT
TCGGTGGAAGGGGAGTATATTTCAGCTTCGTTTACTGTGGAATCGACCAT
GGCTCCTCAGCAGGCGTTTTTGAAGCTTACCCATTTAGACACTGGTTCCG
AGGCGATATACGCAGCAAAGCGTGGGGGGGGGACCGCGGATGCTTGGGCG
TTTATCGCAGTTGTAAGCCTTGTGGACGACGTTGAATTTGTCTTTGGGCA
CCGTTCGGGGGAGTATCAACTTTCTCTCTTAGTAGGGGACGTGAGTCTAG
AGATGCCTTCGGAGCAAGACCTGGGTACGATGAGCTTGGCTTTCCCCCCC
AAGCCCAAAGCGCACTATGCCCTGTATCGCAAGCCTCTCCAGTGGGACTC
TGACACGGCTCTTGCTCCTCTTCCAGAGATTTACCATCAATTCCGCCGAC
CTGAAAAACGACCCAATCCTGTCTTGCCCGCCGCATTTACCACTCTCATC
GCGCTTGCCCTGGCAATGTTCCTCATTTATCTTCCCCGTGTGGGTGCTAA
CTTGGATGGGCTTCCCTCGGCAGGAGCAGCCTTGGTGTGGAATGTGGCAT
GGGTGGGTTGTTTGTGCGCCGTGATACTGTTGTTTACTGCCTACTGGGTG
CACCTAAAGGGCATGACGACGTTAAAATTGTTGTTGCCATTGGGGTTGAC
CACGGTATTGGTGGGGCACCGGGCGTTTGTCAGTAAGAATTTGGCTTTTT
CTTCTGCGACGCCGGGTAATTAAATGAGCGATTGGCAGTTGGCGGAATAG
GGAGGTGGAGGACGTAGGGAGGGATGGAATGAACGGGGAGTGTGAGCAAT
GTGAGTTTAGTGAGAGAAGGTAGTGAAAGAGGTAAGTTAGATTGTGGATT
GGTAGGAGAAGGGGGAGGCGGAGGAGGTGGCCCCTATCTCGGAACAGCGA
AAAAGGACAGAAGGGATGGGAACAGCGAAAAGAGACAGAAGGGGATGAGG
AAAGTTGAGGCCAAGGCTGGCAGTAGGGCTAGGGGGGAAAAAATAAAAAG
GAACAGAGAGGAAAGAAATTTCCAAGAGACATGACAGAGAGCGAAAGACC
AT back to topprotein sequence of NO02G03700.1 >NO02G03700.1-protein ID=NO02G03700.1-protein|Name=NO02G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=661bp
MPSPVIASLMALAVMAVDQASAQVDSYLSEADMQRYQGIANAGMASNTPE
AIYFGTKLSKALGGNISGVCATASEMIVGAPGDLAAVGYGLGALREGGCE
VSLDGAASQVTATLKAGWKAENGLFESKWLVLMADSALGGGKVLENMDAA
MKNLNKHRSEDGFVRASLEEKMGGSTDGTFLLLEAVAATKVTSKGIKKTL
DKATQLLPGAGEGVEGGADPGADATLLPVLVKALAALGEEGLSMTSEQGG
LIAKQLLKMKGTGSAKGAYKVLTALQTLVGSFADAAPVAVVLSMPVIKVG
DGLKVDVRTLLGKPAEGTYGNVEVEKVGVGAAQEVESMAGQVLKTSGRSG
TFEGTTAGLEMGLYDVVLKVGEKLEGVKRSLVVQGEAKLTNVEVGVSPTR
AHSDGRIYPAPLRAGEVKASSVEGEYISASFTVESTMAPQQAFLKLTHLD
TGSEAIYAAKRGGGTADAWAFIAVVSLVDDVEFVFGHRSGEYQLSLLVGD
VSLEMPSEQDLGTMSLAFPPKPKAHYALYRKPLQWDSDTALAPLPEIYHQ
FRRPEKRPNPVLPAAFTTLIALALAMFLIYLPRVGANLDGLPSAGAALVW
NVAWVGCLCAVILLFTAYWVHLKGMTTLKLLLPLGLTTVLVGHRAFVSKN
LAFSSATPGN* back to topmRNA from alignment at chr2:996892..999535- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03700.1 ID=NO02G03700.1|Name=NO02G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2644bp|location=Sequence derived from alignment at chr2:996892..999535- (Nannochloropsis oceanica)
CAGGAAGCAGCGGCGGGTGCCAGGACATACAACACAAGGAGCAAATCAGC
TCGACCACATCCGCAAGCAACACTGCGCTTCATTTAAACCATGCCTAGTC
CTGTCATCGCCTCCTTAATGGCTCTGGCGGTCATGGCCGTGGACCAGGCC
AGCGCGCAGGTGGACTCATACCTGTCTGAGGCGGATATGCAGCGTTACCA
AGGCATTGCAAATGGTAGGTGGTGGAAATAATTGGAAAAGAAAAGGAAGG
AATGTAGAGAGGCGGGAGGCTAAGTTCTTGCATTATGATGGACAGGCAAG
TGGGACCTGTCCTAATTTGGTAAAGACGTGGCAGATTGTACTATGTTGAA
ACACCTGATTTATTGGCTGGACTGGTCGTATGCACGTCGTAGCACCACAG
ATTCTCATCTCTTCTTTGTATTTCTTTTTCTTCCACGACTTGTCTCGATA
CATAAGCCGGCATGGCGAGCAATACTCCCGAAGCCATCTATTTTGGCACA
AAGCTGAGCAAAGCGCTTGGAGGTAATATCAGCGGGGTGTGTGCGACAGC
GTCGGAAATGATCGTGGGCGCGCCCGGCGACTTGGCGGCCGTTGGGTACG
GATTGGGCGCGCTACGTGAAGGCGGTTGCGAGGTTTCTTTGGATGGGGCG
GCATCACAGGTCACGGCTACGCTTAAAGCCGGGTGGAAGGCAGAGAACGG
GTTGTTTGAAAGTAAATGGTTGGTTTTGATGGCAGACTCGGCGTTGGGTG
GGGGCAAAGTTCTGGAGAATATGGATGCGGCGATGAAGAATTTGAATAAG
CACAGGTCCGAAGATGGGTTTGTGCGGGCGTCGCTGGAGGAGAAGATGGG
GGGAAGCACTGACGGCACTTTTCTCCTTTTGGAAGCTGTGGCGGCGACAA
AAGTCACGTCGAAAGGGATAAAGAAAACATTGGATAAGGCCACGCAGCTC
CTGCCGGGGGCGGGGGAAGGTGTGGAGGGAGGGGCTGACCCGGGGGCAGA
TGCTACGTTGTTGCCTGTTTTAGTCAAAGCGCTGGCGGCTTTGGGTGAGG
AAGGTCTGAGCATGACCTCTGAGCAGGGGGGCTTGATCGCAAAACAGTTG
CTGAAGATGAAGGGGACGGGGTCGGCGAAAGGCGCGTATAAAGTGTTGAC
GGCGTTGCAGACCCTAGTGGGCTCATTCGCTGATGCCGCGCCTGTGGCTG
TTGTGCTGTCAATGCCCGTCATCAAGGTGGGGGATGGGCTGAAAGTTGAT
GTTCGGACTCTGTTGGGGAAGCCGGCGGAGGGGACATACGGAAATGTGGA
GGTGGAGAAGGTGGGAGTGGGGGCGGCACAGGAGGTTGAGTCGATGGCGG
GCCAGGTGCTCAAGACTTCGGGGCGCAGTGGAACGTTTGAAGGGACTACG
GCTGGTTTGGAGATGGGGTTGTACGATGTGGTGTTGAAGGTAGGGGAGAA
GCTGGAGGGGGTCAAGCGATCGTTGGTTGTACAGGGTGAAGCCAAGTTGA
CTAATGTGGAGGTGGGCGTGTCCCCAACTCGTGCTCATTCGGATGGGAGG
ATTTACCCGGCTCCTTTGAGGGCAGGGGAGGTGAAGGCATCTTCGGTGGA
AGGGGAGTATATTTCAGCTTCGTTTACTGTGGAATCGACCATGGCTCCTC
AGCAGGCGTTTTTGAAGCTTACCCATTTAGACACTGGTTCCGAGGCGATA
TACGCAGCAAAGCGTGGGGGGGGGACCGCGGATGCTTGGGCGTTTATCGC
AGTTGTAAGCCTTGTGGACGACGTTGAATTTGTCTTTGGGCACCGTTCGG
GGGAGTATCAACTTTCTCTCTTAGTAGGGGACGTGAGTCTAGAGATGCCT
TCGGAGCAAGACCTGGGTACGATGAGCTTGGCTTTCCCCCCCAAGCCCAA
AGCGCACTATGCCCTGTATCGCAAGCCTCTCCAGTGGGACTCTGACACGG
CTCTTGCTCCTCTTCCAGAGATTTACCATCAATTCCGCCGACCTGAAAAA
CGACCCAATCCTGTCTTGCCCGCCGCATTTACCACTCTCATCGCGCTTGC
CCTGGCAATGTTCCTCATTTATCTTCCCCGTGTGGGTGCTAACTTGGATG
GGCTTCCCTCGGCAGGAGCAGCCTTGGTGTGGAATGTGGCATGGGTGGGT
TGTTTGTGCGCCGTGATACTGTTGTTTACTGCCTACTGGGTGCACCTAAA
GGGCATGACGACGTTAAAATTGTTGTTGCCATTGGGGTTGACCACGGTAT
TGGTGGGGCACCGGGCGTTTGTCAGTAAGAATTTGGCTTTTTCTTCTGCG
ACGCCGGGTAATTAAATGAGCGATTGGCAGTTGGCGGAATAGGGAGGTGG
AGGACGTAGGGAGGGATGGAATGAACGGGGAGTGTGAGCAATGTGAGTTT
AGTGAGAGAAGGTAGTGAAAGAGGTAAGTTAGATTGTGGATTGGTAGGAG
AAGGGGGAGGCGGAGGAGGTGGCCCCTATCTCGGAACAGCGAAAAAGGAC
AGAAGGGATGGGAACAGCGAAAAGAGACAGAAGGGGATGAGGAAAGTTGA
GGCCAAGGCTGGCAGTAGGGCTAGGGGGGAAAAAATAAAAAGGAACAGAG
AGGAAAGAAATTTCCAAGAGACATGACAGAGAGCGAAAGACCAT back to topCoding sequence (CDS) from alignment at chr2:996892..999535- >NO02G03700.1 ID=NO02G03700.1|Name=NO02G03700.1|organism=Nannochloropsis oceanica|type=CDS|length=1983bp|location=Sequence derived from alignment at chr2:996892..999535- (Nannochloropsis oceanica)
ATGCCTAGTCCTGTCATCGCCTCCTTAATGGCTCTGGCGGTCATGGCCGT
GGACCAGGCCAGCGCGCAGGTGGACTCATACCTGTCTGAGGCGGATATGC
AGCGTTACCAAGGCATTGCAAATGCCGGCATGGCGAGCAATACTCCCGAA
GCCATCTATTTTGGCACAAAGCTGAGCAAAGCGCTTGGAGGTAATATCAG
CGGGGTGTGTGCGACAGCGTCGGAAATGATCGTGGGCGCGCCCGGCGACT
TGGCGGCCGTTGGGTACGGATTGGGCGCGCTACGTGAAGGCGGTTGCGAG
GTTTCTTTGGATGGGGCGGCATCACAGGTCACGGCTACGCTTAAAGCCGG
GTGGAAGGCAGAGAACGGGTTGTTTGAAAGTAAATGGTTGGTTTTGATGG
CAGACTCGGCGTTGGGTGGGGGCAAAGTTCTGGAGAATATGGATGCGGCG
ATGAAGAATTTGAATAAGCACAGGTCCGAAGATGGGTTTGTGCGGGCGTC
GCTGGAGGAGAAGATGGGGGGAAGCACTGACGGCACTTTTCTCCTTTTGG
AAGCTGTGGCGGCGACAAAAGTCACGTCGAAAGGGATAAAGAAAACATTG
GATAAGGCCACGCAGCTCCTGCCGGGGGCGGGGGAAGGTGTGGAGGGAGG
GGCTGACCCGGGGGCAGATGCTACGTTGTTGCCTGTTTTAGTCAAAGCGC
TGGCGGCTTTGGGTGAGGAAGGTCTGAGCATGACCTCTGAGCAGGGGGGC
TTGATCGCAAAACAGTTGCTGAAGATGAAGGGGACGGGGTCGGCGAAAGG
CGCGTATAAAGTGTTGACGGCGTTGCAGACCCTAGTGGGCTCATTCGCTG
ATGCCGCGCCTGTGGCTGTTGTGCTGTCAATGCCCGTCATCAAGGTGGGG
GATGGGCTGAAAGTTGATGTTCGGACTCTGTTGGGGAAGCCGGCGGAGGG
GACATACGGAAATGTGGAGGTGGAGAAGGTGGGAGTGGGGGCGGCACAGG
AGGTTGAGTCGATGGCGGGCCAGGTGCTCAAGACTTCGGGGCGCAGTGGA
ACGTTTGAAGGGACTACGGCTGGTTTGGAGATGGGGTTGTACGATGTGGT
GTTGAAGGTAGGGGAGAAGCTGGAGGGGGTCAAGCGATCGTTGGTTGTAC
AGGGTGAAGCCAAGTTGACTAATGTGGAGGTGGGCGTGTCCCCAACTCGT
GCTCATTCGGATGGGAGGATTTACCCGGCTCCTTTGAGGGCAGGGGAGGT
GAAGGCATCTTCGGTGGAAGGGGAGTATATTTCAGCTTCGTTTACTGTGG
AATCGACCATGGCTCCTCAGCAGGCGTTTTTGAAGCTTACCCATTTAGAC
ACTGGTTCCGAGGCGATATACGCAGCAAAGCGTGGGGGGGGGACCGCGGA
TGCTTGGGCGTTTATCGCAGTTGTAAGCCTTGTGGACGACGTTGAATTTG
TCTTTGGGCACCGTTCGGGGGAGTATCAACTTTCTCTCTTAGTAGGGGAC
GTGAGTCTAGAGATGCCTTCGGAGCAAGACCTGGGTACGATGAGCTTGGC
TTTCCCCCCCAAGCCCAAAGCGCACTATGCCCTGTATCGCAAGCCTCTCC
AGTGGGACTCTGACACGGCTCTTGCTCCTCTTCCAGAGATTTACCATCAA
TTCCGCCGACCTGAAAAACGACCCAATCCTGTCTTGCCCGCCGCATTTAC
CACTCTCATCGCGCTTGCCCTGGCAATGTTCCTCATTTATCTTCCCCGTG
TGGGTGCTAACTTGGATGGGCTTCCCTCGGCAGGAGCAGCCTTGGTGTGG
AATGTGGCATGGGTGGGTTGTTTGTGCGCCGTGATACTGTTGTTTACTGC
CTACTGGGTGCACCTAAAGGGCATGACGACGTTAAAATTGTTGTTGCCAT
TGGGGTTGACCACGGTATTGGTGGGGCACCGGGCGTTTGTCAGTAAGAAT
TTGGCTTTTTCTTCTGCGACGCCGGGTAATTAA back to top
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