NO02G03690.1, NO02G03690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03690.1
Unique NameNO02G03690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr2:995189..996510 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:995189..996510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03690.1 vs.
Match: EWM30271.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 3.400e-71
Identity = 139/227 (61.23%), Postives = 164/227 (72.25%), Query Frame = 0 
Query:   91 MELNGPPPICPSCTHAHHPAQKCPVCGHRGKGKTYLLVAKTTAPSCATLHFESFDQRHEAQAFKSLWALARIVRNRVFVEEGRIAAELEFDVNDRSSRHVLGLVGDAPVLCARWRVEFGEGGSGGGQQQGKGSGGGCSIAVIDRLAVLEPYRGRGFSSHTLKFLLEDVDCMAREMQPQGWTIGAVAVTLPEKMLPFWGEKLRSQGGFEVVGGSYTDERNQLMLRMVR 318
            M+    PPIC +CTH H+P++KC VCGHRGKGKTYLLVAKTTAPSCATLHF+SFDQ  EAQAFKSLWALARI+R+RVFVEE  IA ELEFDV+D SS HVLG +GDAPVLCARWRVE   G         K  G    +AVIDRLAVL+PYRGRGF++  LK L ED   + +  +     + A+AV +P  + P   +KLR QGGF V+G  + D RN+ MLRMVR
Sbjct:    1 MQPGNEPPICQTCTHPHYPSEKCAVCGHRGKGKTYLLVAKTTAPSCATLHFKSFDQTLEAQAFKSLWALARIIRSRVFVEEEGIAEELEFDVHDESSHHVLGFLGDAPVLCARWRVEHPNGWENRELLSPKMGGTAGPMAVIDRLAVLKPYRGRGFAAEVLKVLGEDAASVLQGTRLGKEVLRAIAVLIPVDLTPCLSDKLRDQGGFHVMGNPFMDARNKAMLRMVR 227
The following BLAST results are available for this feature:
BLAST of NO02G03690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30271.13.400e-7161.23gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03690NO02G03690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03690.1NO02G03690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03690.1.cds1NO02G03690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03690.1.cds2NO02G03690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03690.1.cds3NO02G03690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03690.1.cds4NO02G03690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03690.1 ID=NO02G03690.1|Name=NO02G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGCAGCTCTACGTGTCATTTCTGCGCACCGCCACCAAGCTACACATGTC
GTCTCCGCGCTTGTGTGTAGCCTGTGTAGTGGTGCTGATGCTGACGCTGG
TCAAAGAATATGCGGGGAAAGTGACAAGGCAGACGAGATCTAATAATGCG
AGAAACCCTGCATCATGTCGCGGACGAGCTGTCTTGGCCTTACACGACGA
CCGTCACGACGTCCGCAAGGTCTTGGCTGTGCCGATTATTTTGGCGCCCG
CTTTTACGACACGAAAACGCATGGAGCTCAATGGCCCGCCCCCTATCTGT
CCATCCTGTACGCATGCACACCACCCGGCGCAAAAGTGCCCGGTGTGTGG
GCACCGCGGCAAGGGAAAAACGTACCTTCTCGTAGCCAAGACGACCGCCC
CGTCCTGCGCGACGCTGCACTTTGAAAGCTTCGACCAACGGCATGAAGCC
CAGGCATTCAAGAGCTTGTGGGCCTTGGCAAGGATAGTGCGGAACCGGGT
CTTTGTCGAGGAAGGCCGGATTGCCGCAGAATTAGAATTTGACGTCAACG
ATCGAAGCAGCCGCCATGTGCTTGGCCTTGTGGGGGATGCCCCCGTCCTC
TGTGCACGGTGGAGGGTTGAATTCGGAGAAGGGGGAAGTGGAGGTGGACA
ACAGCAGGGGAAAGGCAGTGGAGGGGGGTGCTCTATAGCAGTAATTGACC
GATTGGCAGTGTTGGAGCCGTACCGTGGGAGGGGTTTTTCCTCTCATACA
CTCAAGTTTTTGTTGGAGGATGTAGATTGCATGGCTCGAGAGATGCAACC
ACAAGGATGGACGATTGGTGCGGTGGCTGTGACACTTCCGGAGAAGATGT
TACCGTTCTGGGGAGAGAAGCTGCGAAGCCAGGGTGGATTTGAAGTGGTT
GGAGGCTCGTATACTGATGAGAGGAATCAGCTGATGCTGAGAATGGTACG
GCTGATGTCTTAG
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protein sequence of NO02G03690.1

>NO02G03690.1-protein ID=NO02G03690.1-protein|Name=NO02G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MQLYVSFLRTATKLHMSSPRLCVACVVVLMLTLVKEYAGKVTRQTRSNNA
RNPASCRGRAVLALHDDRHDVRKVLAVPIILAPAFTTRKRMELNGPPPIC
PSCTHAHHPAQKCPVCGHRGKGKTYLLVAKTTAPSCATLHFESFDQRHEA
QAFKSLWALARIVRNRVFVEEGRIAAELEFDVNDRSSRHVLGLVGDAPVL
CARWRVEFGEGGSGGGQQQGKGSGGGCSIAVIDRLAVLEPYRGRGFSSHT
LKFLLEDVDCMAREMQPQGWTIGAVAVTLPEKMLPFWGEKLRSQGGFEVV
GGSYTDERNQLMLRMVRLMS*
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mRNA from alignment at chr2:995189..996510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03690.1 ID=NO02G03690.1|Name=NO02G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at chr2:995189..996510+ (Nannochloropsis oceanica)
ATGCAGCTCTACGTGTCATTTCTGCGCACCGCCACCAAGCTACACATGTC
GTCTCCGCGCTTGTGTGTAGCCTGTGTAGTGGTGCTGATGCTGACGCTGG
TCAAAGAATATGCGGGGAAAGTGACAAGGCAGACGAGATCTAATAATGCG
AGAAACCCTGCATCATGTCGCGGACGTGAGGAACTCGTTTTTAAGAGGAA
ATTAATAAGTGTTCGGGTCCTCCCCTTACAATTTCTTACCCAATTTCAAA
ATCCGATTTGCACACAGGAGCTGTCTTGGCCTTACACGACGACCGTCACG
ACGTCCGCAAGGTCTTGGCTGTGCCGATTATTTTGGTAATTGAGTCCTCC
TTTCCACGCAACGACGGGTCCTGGGCCTCACCCTCTCCGCGCACACTCCA
ACGCAGGCGCCCGCTTTTACGACACGAAAACGCATGGAGCTCAATGGCCC
GCCCCCTATCTGTCCATCCTGTACGCATGCACACCACCCGGTAAGTCGTT
TGGTCCTCCATTTTACTGCCTGCCTCCACTCCGCATCTGTTATTCCAAGT
CGGTTCATGGAGGAGTTTGCCTGTCTGTGTGTCTTTTGTGTACACATTAT
ATGCTAAGCACTCTTATTCGTGTACTGTAAATTGCGTGACCCATCATTTA
CATTCTTACAAATCCCTACTTACCATATCGGTCCAGGCGCAAAAGTGCCC
GGTGTGTGGGCACCGCGGCAAGGGAAAAACGTACCTTCTCGTAGCCAAGA
CGACCGCCCCGTCCTGCGCGACGCTGCACTTTGAAAGCTTCGACCAACGG
CATGAAGCCCAGGCATTCAAGAGCTTGTGGGCCTTGGCAAGGATAGTGCG
GAACCGGGTCTTTGTCGAGGAAGGCCGGATTGCCGCAGAATTAGAATTTG
ACGTCAACGATCGAAGCAGCCGCCATGTGCTTGGCCTTGTGGGGGATGCC
CCCGTCCTCTGTGCACGGTGGAGGGTTGAATTCGGAGAAGGGGGAAGTGG
AGGTGGACAACAGCAGGGGAAAGGCAGTGGAGGGGGGTGCTCTATAGCAG
TAATTGACCGATTGGCAGTGTTGGAGCCGTACCGTGGGAGGGGTTTTTCC
TCTCATACACTCAAGTTTTTGTTGGAGGATGTAGATTGCATGGCTCGAGA
GATGCAACCACAAGGATGGACGATTGGTGCGGTGGCTGTGACACTTCCGG
AGAAGATGTTACCGTTCTGGGGAGAGAAGCTGCGAAGCCAGGGTGGATTT
GAAGTGGTTGGAGGCTCGTATACTGATGAGAGGAATCAGCTGATGCTGAG
AATGGTACGGCTGATGTCTTAG
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Coding sequence (CDS) from alignment at chr2:995189..996510+

>NO02G03690.1 ID=NO02G03690.1|Name=NO02G03690.1|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr2:995189..996510+ (Nannochloropsis oceanica)
ATGCAGCTCTACGTGTCATTTCTGCGCACCGCCACCAAGCTACACATGTC
GTCTCCGCGCTTGTGTGTAGCCTGTGTAGTGGTGCTGATGCTGACGCTGG
TCAAAGAATATGCGGGGAAAGTGACAAGGCAGACGAGATCTAATAATGCG
AGAAACCCTGCATCATGTCGCGGACGAGCTGTCTTGGCCTTACACGACGA
CCGTCACGACGTCCGCAAGGTCTTGGCTGTGCCGATTATTTTGGCGCCCG
CTTTTACGACACGAAAACGCATGGAGCTCAATGGCCCGCCCCCTATCTGT
CCATCCTGTACGCATGCACACCACCCGGCGCAAAAGTGCCCGGTGTGTGG
GCACCGCGGCAAGGGAAAAACGTACCTTCTCGTAGCCAAGACGACCGCCC
CGTCCTGCGCGACGCTGCACTTTGAAAGCTTCGACCAACGGCATGAAGCC
CAGGCATTCAAGAGCTTGTGGGCCTTGGCAAGGATAGTGCGGAACCGGGT
CTTTGTCGAGGAAGGCCGGATTGCCGCAGAATTAGAATTTGACGTCAACG
ATCGAAGCAGCCGCCATGTGCTTGGCCTTGTGGGGGATGCCCCCGTCCTC
TGTGCACGGTGGAGGGTTGAATTCGGAGAAGGGGGAAGTGGAGGTGGACA
ACAGCAGGGGAAAGGCAGTGGAGGGGGGTGCTCTATAGCAGTAATTGACC
GATTGGCAGTGTTGGAGCCGTACCGTGGGAGGGGTTTTTCCTCTCATACA
CTCAAGTTTTTGTTGGAGGATGTAGATTGCATGGCTCGAGAGATGCAACC
ACAAGGATGGACGATTGGTGCGGTGGCTGTGACACTTCCGGAGAAGATGT
TACCGTTCTGGGGAGAGAAGCTGCGAAGCCAGGGTGGATTTGAAGTGGTT
GGAGGCTCGTATACTGATGAGAGGAATCAGCTGATGCTGAGAATGGTACG
GCTGATGTCTTAG
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Synonyms
Publications