NO02G03680.1, NO02G03680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03680.1
Unique NameNO02G03680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr2:994295..994951 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:994295..994951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03680.1 vs.
Match: EWM30291.1 (nadh ubiquinone [Nannochloropsis gaditana])

HSP 1 Score: 364.0 bits (933), Expect = 3.300e-97
Identity = 187/227 (82.38%), Postives = 197/227 (86.78%), Query Frame = 0 
Query:    1 MSFMRASRAALLSSNAAFG---------AITRSSYSIIRTSSKALHASRPAPQSTEVTKATGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 219
            M+  RA   A+ +S A  G         + + +  ++ RT  + LHAS  A +STEVTKA GGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK
Sbjct:    1 MALSRARIIAMTTSRAIRGVPGCIRDPCSSSITGQNVTRTCIRELHASGRASKSTEVTKAAGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
The following BLAST results are available for this feature:
BLAST of NO02G03680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30291.13.300e-9782.38nadh ubiquinone [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03680NO02G03680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03680.1NO02G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03680.1.cds1NO02G03680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03680.1 ID=NO02G03680.1|Name=NO02G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGTCTTTCATGCGTGCGTCCCGAGCCGCATTGCTGTCCAGCAACGCCGC
CTTTGGGGCCATCACCAGGAGCAGCTACAGCATAATCCGGACTAGCAGCA
AGGCCCTGCATGCCTCGCGGCCGGCGCCGCAAAGCACCGAGGTTACCAAG
GCCACGGGCGGCGTGGACCAACTCCTCAAGACCAAGAACGGCGTCGAGTA
CGTCGTGTCCAAGGTAGACGACTTGGTAAATTGGGCGCGCAAGGGCTCGT
TGTGGCCTATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAAATGATGCAC
TCGGCGGCCGCACGGTACGATATGGAACGGTTCGGCATGGTCTTCCGTGC
GTCCCCCAGGCAATCGGACGTGATGATAGTGGCCGGTACGCTCACCAACA
AGATGGCACCTGCTCTTCGCAAGGTCTACGATCAGATGCCTGAACCCCGG
TGGGTTGTTTCGATGGGCTCATGCGCGAACGGAGGAGGGTACTACCATTA
CTCCTATGCTGTGGTCCGTGGGTGCGACCGTATCGTGCCTGTTGACATTT
ACGTTCCTGGCTGCCCGCCAACGGCCGAAGCCTTATTGTATGGCATGCTT
CAGTTGCAGAAGAAGGTGAAGGGAAATAAGGGTTTATTGCTCAAGCTCCG
CAAGTAG
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protein sequence of NO02G03680.1

>NO02G03680.1-protein ID=NO02G03680.1-protein|Name=NO02G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MSFMRASRAALLSSNAAFGAITRSSYSIIRTSSKALHASRPAPQSTEVTK
ATGGVDQLLKTKNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMH
SAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR
WVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGML
QLQKKVKGNKGLLLKLRK*
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mRNA from alignment at chr2:994295..994951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03680.1 ID=NO02G03680.1|Name=NO02G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at chr2:994295..994951- (Nannochloropsis oceanica)
ATGTCTTTCATGCGTGCGTCCCGAGCCGCATTGCTGTCCAGCAACGCCGC
CTTTGGGGCCATCACCAGGAGCAGCTACAGCATAATCCGGACTAGCAGCA
AGGCCCTGCATGCCTCGCGGCCGGCGCCGCAAAGCACCGAGGTTACCAAG
GCCACGGGCGGCGTGGACCAACTCCTCAAGACCAAGAACGGCGTCGAGTA
CGTCGTGTCCAAGGTAGACGACTTGGTAAATTGGGCGCGCAAGGGCTCGT
TGTGGCCTATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAAATGATGCAC
TCGGCGGCCGCACGGTACGATATGGAACGGTTCGGCATGGTCTTCCGTGC
GTCCCCCAGGCAATCGGACGTGATGATAGTGGCCGGTACGCTCACCAACA
AGATGGCACCTGCTCTTCGCAAGGTCTACGATCAGATGCCTGAACCCCGG
TGGGTTGTTTCGATGGGCTCATGCGCGAACGGAGGAGGGTACTACCATTA
CTCCTATGCTGTGGTCCGTGGGTGCGACCGTATCGTGCCTGTTGACATTT
ACGTTCCTGGCTGCCCGCCAACGGCCGAAGCCTTATTGTATGGCATGCTT
CAGTTGCAGAAGAAGGTGAAGGGAAATAAGGGTTTATTGCTCAAGCTCCG
CAAGTAG
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Coding sequence (CDS) from alignment at chr2:994295..994951-

>NO02G03680.1 ID=NO02G03680.1|Name=NO02G03680.1|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at chr2:994295..994951- (Nannochloropsis oceanica)
ATGTCTTTCATGCGTGCGTCCCGAGCCGCATTGCTGTCCAGCAACGCCGC
CTTTGGGGCCATCACCAGGAGCAGCTACAGCATAATCCGGACTAGCAGCA
AGGCCCTGCATGCCTCGCGGCCGGCGCCGCAAAGCACCGAGGTTACCAAG
GCCACGGGCGGCGTGGACCAACTCCTCAAGACCAAGAACGGCGTCGAGTA
CGTCGTGTCCAAGGTAGACGACTTGGTAAATTGGGCGCGCAAGGGCTCGT
TGTGGCCTATGACCTTCGGCCTGGCCTGCTGTGCCGTGGAAATGATGCAC
TCGGCGGCCGCACGGTACGATATGGAACGGTTCGGCATGGTCTTCCGTGC
GTCCCCCAGGCAATCGGACGTGATGATAGTGGCCGGTACGCTCACCAACA
AGATGGCACCTGCTCTTCGCAAGGTCTACGATCAGATGCCTGAACCCCGG
TGGGTTGTTTCGATGGGCTCATGCGCGAACGGAGGAGGGTACTACCATTA
CTCCTATGCTGTGGTCCGTGGGTGCGACCGTATCGTGCCTGTTGACATTT
ACGTTCCTGGCTGCCCGCCAACGGCCGAAGCCTTATTGTATGGCATGCTT
CAGTTGCAGAAGAAGGTGAAGGGAAATAAGGGTTTATTGCTCAAGCTCCG
CAAGTAG
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Synonyms
Publications