NO02G03610.1, NO02G03610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03610.1
Unique NameNO02G03610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1521
Alignment locationchr2:965009..966529 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:965009..966529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03610.1 vs.
Match: XP_005856374.1 (alpha beta hydrolase fold protein [Nannochloropsis gaditana CCMP526]; EKU19990.1 alpha beta hydrolase fold protein [Nannochloropsis gaditana CCMP526]; EWM30318.1 alpha beta hydrolase fold protein [Nannochloropsis gaditana])

HSP 1 Score: 616.3 bits (1588), Expect = 8.400e-173
Identity = 282/381 (74.02%), Postives = 326/381 (85.56%), Query Frame = 0 
Query:  100 EHQRRSSLPNTQEVLASFLARDFQPSPWLTNEHWQTIWGARAIQDIVMKKLAPNTLPQGWKDVYDRRERWETPDGDFFHVDFLFCDGHPAATSSSPRPLAIVLHGLESTSWALLPRSMAKAYVQRGFDVLALNFRGCCGVDNLKPYSYHLGFTDDLTYVLRRLHAEDPCRRVYLTGFSLGGNVILKCLGELGEDAVSLGVEGAAVACVPFDAVRSSSKIDTGFNRWVYADNFLKTLKVKAAQKWKKHRESLDGEELGEGPYDLERVLACSRIGDFDDEVIAKLHNFDGKVDYYTQSCSKQYLPRIRIPALVINARDDPFINENGLPAPDEVGEGTVRLVYHKHGGHCGFLTGQEEKGHREEERWLPTELARFLMHVDVPFR 481
            E  R S     Q VL++F AR F+P PW+TNEHWQTIWGAR IQD ++KK A  +LP+GW+DVYDRRERW+TPDGDFFHVDFLF    P+   S PRP+AIVLHGLESTSWA+LPRSMAKA+ +RGFDVLALNFRGCCG +NLK YSYHLGFTDDL + ++RL AE+P RR+YLTGFSLGGNVILKCLGELGE+A S+GV+GAAVACVPFDAVRSSSKIDTGFNRWVYA NFL TLKVKAA+K++ H+   +G+ + +  YDL+RVLACS IGDFDDEV+AKLHNF+ K+DYY QSCSKQYLP +RIPALVINARDDPFINE GLP P++VG+GTVRL+YH +GGHCGFLTGQE+  H E+ERWLPTELARFL HVD PFR
Sbjct:   73 EGPRLSEASTRQVVLSTFPARPFEPLPWVTNEHWQTIWGARVIQDTMLKKFASESLPKGWQDVYDRRERWDTPDGDFFHVDFLFSHVPPSGPPSQPRPMAIVLHGLESTSWAILPRSMAKAFARRGFDVLALNFRGCCGTENLKAYSYHLGFTDDLKFAIQRLFAEEPRRRIYLTGFSLGGNVILKCLGELGEEAASMGVQGAAVACVPFDAVRSSSKIDTGFNRWVYAANFLSTLKVKAAKKYETHQRHREGKGVDKELYDLDRVLACSTIGDFDDEVVAKLHNFEDKIDYYRQSCSKQYLPLVRIPALVINARDDPFINEAGLPTPEDVGDGTVRLIYHSYGGHCGFLTGQEKTSH-EDERWLPTELARFLEHVDRPFR 452
The following BLAST results are available for this feature:
BLAST of NO02G03610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856374.18.400e-17374.02alpha beta hydrolase fold protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03610NO02G03610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03610.1NO02G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03610.1.cds1NO02G03610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03610.1 ID=NO02G03610.1|Name=NO02G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
ATGCCCATCCGCAAGCTTTTCACCTCGTCCACACCGCCCGCCTCGTCTCC
CACATCATCGTCGACCGGTAGCGGCAGCTCTTCTTATGGCAGCGCCCGCA
ATAGTTTGCCGGGGCACTTCCGCTTCCCCAGCACGCGTCAGAGCAAGGGC
AGCAGCTCTCAAGTCACATCGGTGGAGGACGACAGTGACCAAGCGTCCGT
TTCCTCTTCCATGGTGGGCTTCCACGGTTGCTCGTCGATCGGTACTCGTG
ACGATGACGACGATGACGGCGGCGAAGCCCTTAACGGTGACCAAGGGGAG
CACCAACGCCGGTCCTCCCTACCCAACACGCAAGAGGTTTTGGCCTCTTT
CCTCGCTCGCGACTTCCAACCTTCGCCATGGCTTACGAATGAACACTGGC
AAACCATTTGGGGTGCTCGAGCTATTCAAGACATTGTAATGAAAAAGCTG
GCGCCCAACACCTTGCCGCAAGGATGGAAGGATGTGTATGATCGACGCGA
GCGGTGGGAGACGCCCGATGGGGACTTTTTCCACGTGGATTTCTTATTCT
GTGACGGCCATCCTGCCGCCACTTCCTCATCACCACGGCCACTAGCGATT
GTCTTGCATGGTCTAGAGTCCACCTCATGGGCGCTGCTGCCGCGTTCCAT
GGCCAAGGCTTACGTTCAACGAGGCTTCGACGTCCTCGCCCTGAACTTCC
GCGGCTGTTGTGGAGTTGATAACCTCAAGCCCTACTCCTACCACCTGGGG
TTCACGGACGATTTGACTTACGTACTCCGCCGCCTGCACGCCGAGGACCC
CTGCCGTCGTGTGTATTTGACTGGCTTCTCGCTTGGCGGGAATGTTATTC
TTAAGTGTTTGGGAGAGCTGGGGGAGGATGCGGTCAGCCTAGGCGTGGAA
GGGGCGGCGGTGGCCTGCGTGCCCTTCGATGCCGTGCGCTCCTCCAGTAA
GATCGACACGGGTTTCAATCGATGGGTGTATGCGGACAACTTTTTGAAAA
CGCTCAAAGTGAAGGCGGCGCAGAAATGGAAGAAGCACAGGGAGTCCTTG
GACGGGGAGGAGCTGGGGGAGGGCCCTTACGACCTGGAGCGAGTGCTGGC
TTGTTCTCGCATCGGGGATTTTGACGACGAGGTAATTGCCAAGCTGCACA
ATTTTGATGGTAAAGTGGACTACTACACGCAGAGCTGCTCTAAGCAATAC
CTGCCTCGCATCCGGATTCCAGCTCTAGTGATAAACGCGCGCGATGACCC
TTTCATCAACGAGAATGGCTTACCAGCGCCGGATGAGGTTGGAGAGGGTA
CAGTTCGCCTGGTATATCATAAGCATGGTGGGCATTGTGGATTTTTAACA
GGGCAGGAGGAGAAAGGGCATCGAGAGGAGGAACGGTGGCTTCCCACTGA
ATTGGCGCGTTTTTTGATGCACGTTGACGTGCCGTTTCGTGCACTGGAGA
GAAATGACGACTGTAGTGATGTTGGGGAGAATTGGGCAGGCGAGAGCCAG
TCTGTGTTTGCGGTGAAATGA
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protein sequence of NO02G03610.1

>NO02G03610.1-protein ID=NO02G03610.1-protein|Name=NO02G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MPIRKLFTSSTPPASSPTSSSTGSGSSSYGSARNSLPGHFRFPSTRQSKG
SSSQVTSVEDDSDQASVSSSMVGFHGCSSIGTRDDDDDDGGEALNGDQGE
HQRRSSLPNTQEVLASFLARDFQPSPWLTNEHWQTIWGARAIQDIVMKKL
APNTLPQGWKDVYDRRERWETPDGDFFHVDFLFCDGHPAATSSSPRPLAI
VLHGLESTSWALLPRSMAKAYVQRGFDVLALNFRGCCGVDNLKPYSYHLG
FTDDLTYVLRRLHAEDPCRRVYLTGFSLGGNVILKCLGELGEDAVSLGVE
GAAVACVPFDAVRSSSKIDTGFNRWVYADNFLKTLKVKAAQKWKKHRESL
DGEELGEGPYDLERVLACSRIGDFDDEVIAKLHNFDGKVDYYTQSCSKQY
LPRIRIPALVINARDDPFINENGLPAPDEVGEGTVRLVYHKHGGHCGFLT
GQEEKGHREEERWLPTELARFLMHVDVPFRALERNDDCSDVGENWAGESQ
SVFAVK*
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mRNA from alignment at chr2:965009..966529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03610.1 ID=NO02G03610.1|Name=NO02G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp|location=Sequence derived from alignment at chr2:965009..966529+ (Nannochloropsis oceanica)
ATGCCCATCCGCAAGCTTTTCACCTCGTCCACACCGCCCGCCTCGTCTCC
CACATCATCGTCGACCGGTAGCGGCAGCTCTTCTTATGGCAGCGCCCGCA
ATAGTTTGCCGGGGCACTTCCGCTTCCCCAGCACGCGTCAGAGCAAGGGC
AGCAGCTCTCAAGTCACATCGGTGGAGGACGACAGTGACCAAGCGTCCGT
TTCCTCTTCCATGGTGGGCTTCCACGGTTGCTCGTCGATCGGTACTCGTG
ACGATGACGACGATGACGGCGGCGAAGCCCTTAACGGTGACCAAGGGGAG
CACCAACGCCGGTCCTCCCTACCCAACACGCAAGAGGTTTTGGCCTCTTT
CCTCGCTCGCGACTTCCAACCTTCGCCATGGCTTACGAATGAACACTGGC
AAACCATTTGGGGTGCTCGAGCTATTCAAGACATTGTAATGAAAAAGCTG
GCGCCCAACACCTTGCCGCAAGGATGGAAGGATGTGTATGATCGACGCGA
GCGGTGGGAGACGCCCGATGGGGACTTTTTCCACGTGGATTTCTTATTCT
GTGACGGCCATCCTGCCGCCACTTCCTCATCACCACGGCCACTAGCGATT
GTCTTGCATGGTCTAGAGTCCACCTCATGGGCGCTGCTGCCGCGTTCCAT
GGCCAAGGCTTACGTTCAACGAGGCTTCGACGTCCTCGCCCTGAACTTCC
GCGGCTGTTGTGGAGTTGATAACCTCAAGCCCTACTCCTACCACCTGGGG
TTCACGGACGATTTGACTTACGTACTCCGCCGCCTGCACGCCGAGGACCC
CTGCCGTCGTGTGTATTTGACTGGCTTCTCGCTTGGCGGGAATGTTATTC
TTAAGTGTTTGGGAGAGCTGGGGGAGGATGCGGTCAGCCTAGGCGTGGAA
GGGGCGGCGGTGGCCTGCGTGCCCTTCGATGCCGTGCGCTCCTCCAGTAA
GATCGACACGGGTTTCAATCGATGGGTGTATGCGGACAACTTTTTGAAAA
CGCTCAAAGTGAAGGCGGCGCAGAAATGGAAGAAGCACAGGGAGTCCTTG
GACGGGGAGGAGCTGGGGGAGGGCCCTTACGACCTGGAGCGAGTGCTGGC
TTGTTCTCGCATCGGGGATTTTGACGACGAGGTAATTGCCAAGCTGCACA
ATTTTGATGGTAAAGTGGACTACTACACGCAGAGCTGCTCTAAGCAATAC
CTGCCTCGCATCCGGATTCCAGCTCTAGTGATAAACGCGCGCGATGACCC
TTTCATCAACGAGAATGGCTTACCAGCGCCGGATGAGGTTGGAGAGGGTA
CAGTTCGCCTGGTATATCATAAGCATGGTGGGCATTGTGGATTTTTAACA
GGGCAGGAGGAGAAAGGGCATCGAGAGGAGGAACGGTGGCTTCCCACTGA
ATTGGCGCGTTTTTTGATGCACGTTGACGTGCCGTTTCGTGCACTGGAGA
GAAATGACGACTGTAGTGATGTTGGGGAGAATTGGGCAGGCGAGAGCCAG
TCTGTGTTTGCGGTGAAATGA
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Coding sequence (CDS) from alignment at chr2:965009..966529+

>NO02G03610.1 ID=NO02G03610.1|Name=NO02G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr2:965009..966529+ (Nannochloropsis oceanica)
ATGCCCATCCGCAAGCTTTTCACCTCGTCCACACCGCCCGCCTCGTCTCC
CACATCATCGTCGACCGGTAGCGGCAGCTCTTCTTATGGCAGCGCCCGCA
ATAGTTTGCCGGGGCACTTCCGCTTCCCCAGCACGCGTCAGAGCAAGGGC
AGCAGCTCTCAAGTCACATCGGTGGAGGACGACAGTGACCAAGCGTCCGT
TTCCTCTTCCATGGTGGGCTTCCACGGTTGCTCGTCGATCGGTACTCGTG
ACGATGACGACGATGACGGCGGCGAAGCCCTTAACGGTGACCAAGGGGAG
CACCAACGCCGGTCCTCCCTACCCAACACGCAAGAGGTTTTGGCCTCTTT
CCTCGCTCGCGACTTCCAACCTTCGCCATGGCTTACGAATGAACACTGGC
AAACCATTTGGGGTGCTCGAGCTATTCAAGACATTGTAATGAAAAAGCTG
GCGCCCAACACCTTGCCGCAAGGATGGAAGGATGTGTATGATCGACGCGA
GCGGTGGGAGACGCCCGATGGGGACTTTTTCCACGTGGATTTCTTATTCT
GTGACGGCCATCCTGCCGCCACTTCCTCATCACCACGGCCACTAGCGATT
GTCTTGCATGGTCTAGAGTCCACCTCATGGGCGCTGCTGCCGCGTTCCAT
GGCCAAGGCTTACGTTCAACGAGGCTTCGACGTCCTCGCCCTGAACTTCC
GCGGCTGTTGTGGAGTTGATAACCTCAAGCCCTACTCCTACCACCTGGGG
TTCACGGACGATTTGACTTACGTACTCCGCCGCCTGCACGCCGAGGACCC
CTGCCGTCGTGTGTATTTGACTGGCTTCTCGCTTGGCGGGAATGTTATTC
TTAAGTGTTTGGGAGAGCTGGGGGAGGATGCGGTCAGCCTAGGCGTGGAA
GGGGCGGCGGTGGCCTGCGTGCCCTTCGATGCCGTGCGCTCCTCCAGTAA
GATCGACACGGGTTTCAATCGATGGGTGTATGCGGACAACTTTTTGAAAA
CGCTCAAAGTGAAGGCGGCGCAGAAATGGAAGAAGCACAGGGAGTCCTTG
GACGGGGAGGAGCTGGGGGAGGGCCCTTACGACCTGGAGCGAGTGCTGGC
TTGTTCTCGCATCGGGGATTTTGACGACGAGGTAATTGCCAAGCTGCACA
ATTTTGATGGTAAAGTGGACTACTACACGCAGAGCTGCTCTAAGCAATAC
CTGCCTCGCATCCGGATTCCAGCTCTAGTGATAAACGCGCGCGATGACCC
TTTCATCAACGAGAATGGCTTACCAGCGCCGGATGAGGTTGGAGAGGGTA
CAGTTCGCCTGGTATATCATAAGCATGGTGGGCATTGTGGATTTTTAACA
GGGCAGGAGGAGAAAGGGCATCGAGAGGAGGAACGGTGGCTTCCCACTGA
ATTGGCGCGTTTTTTGATGCACGTTGACGTGCCGTTTCGTGCACTGGAGA
GAAATGACGACTGTAGTGATGTTGGGGAGAATTGGGCAGGCGAGAGCCAG
TCTGTGTTTGCGGTGAAATGA
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Synonyms
Publications