NO02G03600.1, NO02G03600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03600.1
Unique NameNO02G03600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1521
Alignment locationchr2:963175..964695 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:963175..964695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03600.1 vs.
Match: EWM30243.1 (glutamine synthetase [Nannochloropsis gaditana])

HSP 1 Score: 617.1 bits (1590), Expect = 4.900e-173
Identity = 300/492 (60.98%), Postives = 372/492 (75.61%), Query Frame = 0 
Query:   19 DIRYIDLLWCSLAGLRCLRVVPVFVA----AVDGPDDRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVLGSADCQITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            + ++I+ LWCSLAGLRCLRVVPV        VD   D D +  L WLP P P+ SL R  ++LP H D PS  SGV  +GD+ L ++DP  +L  LPWRP H+M  V MLDPIS  PWSLCPRSCLARI++KA+  HG++FRVGFELEF L + D +  +  TYSSA  FD  + +LD+LC TL  +G++VEQ+HKES PGQFE+VLGH P M AVDGLL AREA+ AVA RHQRRV  LPK++ E+AGNGCHVH+SLW+NG+N+L   G T    S   LD VL  Y +  G   L+ET RQFLGGL ALLPALMCFTTPTPNSFRR+QP AWAGAFQGWGI NKEVPLRLP+Q+L++G+FTN+EVKLCD+TANP+IA+AA++SAGLVG++LAA  S+ D   ++   LP PL+VD G+L+  E+TRR I++LP+ W+ AKA LMSPE   LRELLG DMV+ACVA RESEWAAL G+ L++E+ LL+D+Y
Sbjct:    4 ETKHINFLWCSLAGLRCLRVVPVHTMYDKKRVDQYADIDENGYLKWLPKPMPSVSLSRACISLPAHEDTPSPDSGVPFVGDICLQLEDPMSNLMCLPWRPKHFMGAVRMLDPISHAPWSLCPRSCLARILEKAQARHGISFRVGFELEFALATIDGKFDDRHTYSSARGFDVESSLLDDLCDTLYSMGIVVEQLHKESAPGQFELVLGHLPAMEAVDGLLLAREAVAAVAYRHQRRVTLLPKFLPEYAGNGCHVHLSLWKNGINILSLSGATIRPGS---LDGVLDMYTTLSGFSSLNETFRQFLGGLVALLPALMCFTTPTPNSFRRLQPGAWAGAFQGWGIANKEVPLRLPVQTLEDGLFTNVEVKLCDSTANPHIALAAILSAGLVGVDLAATLSEADF-AESFAALPAPLDVDPGQLTYAERTRRKIKELPREWSTAKACLMSPEGKGLRELLGEDMVRACVAIRESEWAALGGIRLEEEIDLLFDRY 491
The following BLAST results are available for this feature:
BLAST of NO02G03600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30243.14.900e-17360.98glutamine synthetase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03600NO02G03600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03600.1NO02G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03600.1.cds1NO02G03600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03600.1 ID=NO02G03600.1|Name=NO02G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
ATGCCTGAGCCTCGACTACAACCACATCGCAAACGGGCCCGCGTCGGTCT
CCCCGACATTCGATACATCGATCTGCTGTGGTGCTCTCTCGCTGGCTTGC
GATGCCTGCGCGTTGTACCTGTGTTTGTTGCTGCCGTCGACGGCCCTGAC
GACCGTGATACCTCAAATCTACTTTATTGGCTGCCCGACCCCTGCCCGAC
GGCCTCCTTGTGCCGGGTAGCGCTGACGCTTCCCTGTCATGCAGACATTC
CAAGCCGGGGCAGTGGTGTCTCGTCTTTGGGAGACGTGCGTCTGAATGTG
AAAGATCCTCAAATGGATCTCTGCTCTCTCCCATGGCGACCCCACCACTA
CATGGCACCGGTGGAAATGCTTGATCCCATTTCCGCGATGCCTTGGTCTC
TTTGTCCCCGAAGCTGCCTTGCACGCATTGTCAAGAAAGCAGAGCTTGAG
CATGGTCTGACATTTCGTGTGGGATTTGAGTTGGAGTTCGTGCTGGGTTC
GGCAGATTGTCAAATCACTGAAATGCGCACCTACTCCTCAGCTGGGGCGT
TCGACGACGCGGCCCCTATTCTTGACGAGCTGTGCAAAACTCTGAGTGAG
CTGGGCCTCATCGTGGAACAAATGCACAAAGAAAGCGGACCAGGCCAATT
TGAAATTGTCCTTGGTCACAGACCAGTGATGACAGCAGTCGATGGACTGC
TGTTCGCTCGGGAGGCCATCGTTGCCGTGGCACAGCGGCACCAGCGGCGC
GTCAACTTCTTGCCTAAGTACATGGGTGAACACGCGGGCAACGGTTGCCA
CGTGCACATTAGCCTATGGCGGAATGGGATGAATTTACTGCCACCACCCG
GTCTTACTGAAACCACACCCTCTCTAACCAATTTGGACGACGTGCTCAAG
ACGTATTGTAGTGCTGAGGGAATGTTGTTGCTCGATGAGACGCTTCGTCA
ATTTCTTGGTGGCCTTCATGCCTTGCTGCCCGCGCTTATGTGCTTTACGA
CTCCCACACCCAACTCATTCCGTCGCATCCAGCCACGAGCGTGGGCAGGC
GCCTTTCAAGGATGGGGGATTGGCAACAAGGAAGTACCACTTCGTCTACC
TATTCAATCGTTGGATGAAGGGGTATTTACAAACCTTGAGGTCAAGCTGT
GCGATGCCACGGCCAATCCTTACATTGCTGTCGCCGCGCTAATAAGTGCT
GGTCTGGTAGGCTTGGAATTGGCGGCAATGACCTCAAAGGACGATGAGCC
AATCCAAAACCCTATGCTCCTACCTCCGCCGCTTGAAGTAGATGCAGGAG
AGCTTTCGCTTTTTGAACAGACACGACGTGGTATTCGAAAATTGCCCAAG
AACTGGGCAGAGGCCAAGGCGCACCTAATGAGCCCGGAGGCAACGCGTTT
GAGGGAATTGCTGGGAACGGACATGGTGCAAGCTTGTGTAGCCACCAGGG
AAAGCGAATGGGCGGCGTTGAAGGGAATGACGCTTGACAAGGAAGTTTCA
TTGCTATACGACAAGTATTGA
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protein sequence of NO02G03600.1

>NO02G03600.1-protein ID=NO02G03600.1-protein|Name=NO02G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MPEPRLQPHRKRARVGLPDIRYIDLLWCSLAGLRCLRVVPVFVAAVDGPD
DRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNV
KDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELE
HGLTFRVGFELEFVLGSADCQITEMRTYSSAGAFDDAAPILDELCKTLSE
LGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRR
VNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLK
TYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAG
AFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISA
GLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPK
NWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVS
LLYDKY*
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mRNA from alignment at chr2:963175..964695+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03600.1 ID=NO02G03600.1|Name=NO02G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp|location=Sequence derived from alignment at chr2:963175..964695+ (Nannochloropsis oceanica)
ATGCCTGAGCCTCGACTACAACCACATCGCAAACGGGCCCGCGTCGGTCT
CCCCGACATTCGATACATCGATCTGCTGTGGTGCTCTCTCGCTGGCTTGC
GATGCCTGCGCGTTGTACCTGTGTTTGTTGCTGCCGTCGACGGCCCTGAC
GACCGTGATACCTCAAATCTACTTTATTGGCTGCCCGACCCCTGCCCGAC
GGCCTCCTTGTGCCGGGTAGCGCTGACGCTTCCCTGTCATGCAGACATTC
CAAGCCGGGGCAGTGGTGTCTCGTCTTTGGGAGACGTGCGTCTGAATGTG
AAAGATCCTCAAATGGATCTCTGCTCTCTCCCATGGCGACCCCACCACTA
CATGGCACCGGTGGAAATGCTTGATCCCATTTCCGCGATGCCTTGGTCTC
TTTGTCCCCGAAGCTGCCTTGCACGCATTGTCAAGAAAGCAGAGCTTGAG
CATGGTCTGACATTTCGTGTGGGATTTGAGTTGGAGTTCGTGCTGGGTTC
GGCAGATTGTCAAATCACTGAAATGCGCACCTACTCCTCAGCTGGGGCGT
TCGACGACGCGGCCCCTATTCTTGACGAGCTGTGCAAAACTCTGAGTGAG
CTGGGCCTCATCGTGGAACAAATGCACAAAGAAAGCGGACCAGGCCAATT
TGAAATTGTCCTTGGTCACAGACCAGTGATGACAGCAGTCGATGGACTGC
TGTTCGCTCGGGAGGCCATCGTTGCCGTGGCACAGCGGCACCAGCGGCGC
GTCAACTTCTTGCCTAAGTACATGGGTGAACACGCGGGCAACGGTTGCCA
CGTGCACATTAGCCTATGGCGGAATGGGATGAATTTACTGCCACCACCCG
GTCTTACTGAAACCACACCCTCTCTAACCAATTTGGACGACGTGCTCAAG
ACGTATTGTAGTGCTGAGGGAATGTTGTTGCTCGATGAGACGCTTCGTCA
ATTTCTTGGTGGCCTTCATGCCTTGCTGCCCGCGCTTATGTGCTTTACGA
CTCCCACACCCAACTCATTCCGTCGCATCCAGCCACGAGCGTGGGCAGGC
GCCTTTCAAGGATGGGGGATTGGCAACAAGGAAGTACCACTTCGTCTACC
TATTCAATCGTTGGATGAAGGGGTATTTACAAACCTTGAGGTCAAGCTGT
GCGATGCCACGGCCAATCCTTACATTGCTGTCGCCGCGCTAATAAGTGCT
GGTCTGGTAGGCTTGGAATTGGCGGCAATGACCTCAAAGGACGATGAGCC
AATCCAAAACCCTATGCTCCTACCTCCGCCGCTTGAAGTAGATGCAGGAG
AGCTTTCGCTTTTTGAACAGACACGACGTGGTATTCGAAAATTGCCCAAG
AACTGGGCAGAGGCCAAGGCGCACCTAATGAGCCCGGAGGCAACGCGTTT
GAGGGAATTGCTGGGAACGGACATGGTGCAAGCTTGTGTAGCCACCAGGG
AAAGCGAATGGGCGGCGTTGAAGGGAATGACGCTTGACAAGGAAGTTTCA
TTGCTATACGACAAGTATTGA
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Coding sequence (CDS) from alignment at chr2:963175..964695+

>NO02G03600.1 ID=NO02G03600.1|Name=NO02G03600.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr2:963175..964695+ (Nannochloropsis oceanica)
ATGCCTGAGCCTCGACTACAACCACATCGCAAACGGGCCCGCGTCGGTCT
CCCCGACATTCGATACATCGATCTGCTGTGGTGCTCTCTCGCTGGCTTGC
GATGCCTGCGCGTTGTACCTGTGTTTGTTGCTGCCGTCGACGGCCCTGAC
GACCGTGATACCTCAAATCTACTTTATTGGCTGCCCGACCCCTGCCCGAC
GGCCTCCTTGTGCCGGGTAGCGCTGACGCTTCCCTGTCATGCAGACATTC
CAAGCCGGGGCAGTGGTGTCTCGTCTTTGGGAGACGTGCGTCTGAATGTG
AAAGATCCTCAAATGGATCTCTGCTCTCTCCCATGGCGACCCCACCACTA
CATGGCACCGGTGGAAATGCTTGATCCCATTTCCGCGATGCCTTGGTCTC
TTTGTCCCCGAAGCTGCCTTGCACGCATTGTCAAGAAAGCAGAGCTTGAG
CATGGTCTGACATTTCGTGTGGGATTTGAGTTGGAGTTCGTGCTGGGTTC
GGCAGATTGTCAAATCACTGAAATGCGCACCTACTCCTCAGCTGGGGCGT
TCGACGACGCGGCCCCTATTCTTGACGAGCTGTGCAAAACTCTGAGTGAG
CTGGGCCTCATCGTGGAACAAATGCACAAAGAAAGCGGACCAGGCCAATT
TGAAATTGTCCTTGGTCACAGACCAGTGATGACAGCAGTCGATGGACTGC
TGTTCGCTCGGGAGGCCATCGTTGCCGTGGCACAGCGGCACCAGCGGCGC
GTCAACTTCTTGCCTAAGTACATGGGTGAACACGCGGGCAACGGTTGCCA
CGTGCACATTAGCCTATGGCGGAATGGGATGAATTTACTGCCACCACCCG
GTCTTACTGAAACCACACCCTCTCTAACCAATTTGGACGACGTGCTCAAG
ACGTATTGTAGTGCTGAGGGAATGTTGTTGCTCGATGAGACGCTTCGTCA
ATTTCTTGGTGGCCTTCATGCCTTGCTGCCCGCGCTTATGTGCTTTACGA
CTCCCACACCCAACTCATTCCGTCGCATCCAGCCACGAGCGTGGGCAGGC
GCCTTTCAAGGATGGGGGATTGGCAACAAGGAAGTACCACTTCGTCTACC
TATTCAATCGTTGGATGAAGGGGTATTTACAAACCTTGAGGTCAAGCTGT
GCGATGCCACGGCCAATCCTTACATTGCTGTCGCCGCGCTAATAAGTGCT
GGTCTGGTAGGCTTGGAATTGGCGGCAATGACCTCAAAGGACGATGAGCC
AATCCAAAACCCTATGCTCCTACCTCCGCCGCTTGAAGTAGATGCAGGAG
AGCTTTCGCTTTTTGAACAGACACGACGTGGTATTCGAAAATTGCCCAAG
AACTGGGCAGAGGCCAAGGCGCACCTAATGAGCCCGGAGGCAACGCGTTT
GAGGGAATTGCTGGGAACGGACATGGTGCAAGCTTGTGTAGCCACCAGGG
AAAGCGAATGGGCGGCGTTGAAGGGAATGACGCTTGACAAGGAAGTTTCA
TTGCTATACGACAAGTATTGA
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Synonyms
Publications