NO02G03590.1, NO02G03590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03590.1
Unique NameNO02G03590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1641
Alignment locationchr2:961488..963128 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:961488..963128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03590.1 vs.
Match: EWM30313.1 (hypothetical protein Naga_100003g121 [Nannochloropsis gaditana])

HSP 1 Score: 198.4 bits (503), Expect = 4.600e-47
Identity = 155/402 (38.56%), Postives = 215/402 (53.48%), Query Frame = 0 
Query:   22 YLVLQLEQLVVQIEEHMNPSLVGHSFIVVVDPPSVQTEGGVDEGELHRTDLDSL-PLGVSAGAMRQGVRQNMSTGEIMHHFPVVMRVPAAAWRSPPSAPVLEAYRNLAERGPVRLLRRVVAGDGLKLLEDGKIGRLGQYSVQMQGTNEEEESESSSSSISVFLEQAKELGTFLQAELARLLGYRLVFGVGRTMEEARRNAKGLLLLRS-----KPPGKRHARTEVDHAHTDNHATERTEVQSPAEGEKYKTYARNCKGVLDSK---DEKE------EYGPLSLAEFICQTCKASFFKAVELLEHFQNEHEQNFQTKKMTARVPTRKPLYPSVETATSSDCSSKTEERLRDMRAASCLQLIPKSTPQLHPQGPGIITMSEILATRTTTADITTFLCEIGAPPI 409
            +L+L+LE L VQIEEHMNPSL+G +F++V           ++  E   ++ DSL PL  SA A   G+RQNM+ G IM HFP V  V AA+WRS  S  +L+ Y+N+A +GPV+LLRRVV GDGL L+ED   G+ G+YSV +  +    E + +  S    +EQAKELG FL+AEL RLLGYRL FGVGRT+EEARR AKGLL+ R       PP +RH   E   +  D+ A   +      +G++  T+++N +     +   DE+E           S+    C+T  +        +E+ Q         K  T RV    P          +D   KT++    + A  C Q    S  +L   G G + MS IL T T  +++ +FLC + AP I
Sbjct:   23 HLLLKLEHLFVQIEEHMNPSLIGRAFVIV---------DTLEAKEQQESEDDSLTPLDYSAEAFNSGIRQNMTLGFIMRHFPDVALVLAASWRSR-STSMLQEYQNVANKGPVQLLRRVVEGDGLTLVEDFGDGQFGEYSVALPTS----EHDCTRPSYLGEIEQAKELGGFLRAELKRLLGYRLTFGVGRTLEEARRTAKGLLVFRGDGSMPSPPLRRH--HENSFSGQDHDARPTSHGFFFEDGDESGTFSQNYESSNRQEIRVDEEEIVLGASMNRAWSMRSSKCRTSPSD-------VENAQQASHSGQAQKVSTNRV---APFCSQDTKLRVTDDKMKTQQ---CVEAFKCRQSTAISGHRLRLHGHGTVVMSWILDTFTDASELASFLCSVEAPSI 395
The following BLAST results are available for this feature:
BLAST of NO02G03590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30313.14.600e-4738.56hypothetical protein Naga_100003g121 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03590NO02G03590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03590.1NO02G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03590.1.cds1NO02G03590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03590.1 ID=NO02G03590.1|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp
TATTCGTGCTTGTGTTTTGGGTGAGTGTTTGGTTGTATAGTAGGTGAGTG
CACTATCAATATTACGGGATAGTCGTCAATCGTCCTGTCATGCGACCATG
CACGACTAATAGTCGTCATACCCACCTGAGGAAAGCGAAGAAAAAGCGTG
ACCGCAACCCAAAAGCTCAAGCGGGGTGGACTCGCGTCACGTTGACCTCC
CTGCCTCTACCACAGCTATGATAATCACACCCCGCGCTCATTTCCAACCA
ACCCCACGACAGGAAGCGCACATGTATACAAAGCTCTCCTTCCCCACGCG
GCGATGGTTCCTTACAGCCTTGGCACGGAGGCGCTAGCTAGCGATGGACC
AGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAATGACCAC
ATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGATTGAAGA
GCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTCGTCGACC
CTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCTGCACCGT
ACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCATGCGGCA
AGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCACTTTCCAG
TTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTCCGCACCC
GTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCAGGCTACT
GCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGACGGCAAGA
TTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAATGAGGAG
GAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCGAGCAGGC
GAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTGCTGGGGT
ATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCGCCGAAAT
GCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGAGACACGC
GAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACAGAAAGGA
CCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTATGCACGC
AACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAATACGGGCC
ATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGCTTTTTTA
AGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCAAAACTTC
CAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTCTGTACCC
ATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACCGAGGAAC
GCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACCGAAGTCA
ACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGAGCGAAAT
CCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTGTGCGAGA
TTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACCTGGGTCT
CAAGAAGAACAAGCAAAGAAATAAATTTATTACCACCAGAA
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protein sequence of NO02G03590.1

>NO02G03590.1-protein ID=NO02G03590.1-protein|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MDQPPPPSFINPFALLNDHMAYLVLQLEQLVVQIEEHMNPSLVGHSFIVV
VDPPSVQTEGGVDEGELHRTDLDSLPLGVSAGAMRQGVRQNMSTGEIMHH
FPVVMRVPAAAWRSPPSAPVLEAYRNLAERGPVRLLRRVVAGDGLKLLED
GKIGRLGQYSVQMQGTNEEEESESSSSSISVFLEQAKELGTFLQAELARL
LGYRLVFGVGRTMEEARRNAKGLLLLRSKPPGKRHARTEVDHAHTDNHAT
ERTEVQSPAEGEKYKTYARNCKGVLDSKDEKEEYGPLSLAEFICQTCKAS
FFKAVELLEHFQNEHEQNFQTKKMTARVPTRKPLYPSVETATSSDCSSKT
EERLRDMRAASCLQLIPKSTPQLHPQGPGIITMSEILATRTTTADITTFL
CEIGAPPIHLPGWPPPPGSQEEQAKK*
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mRNA from alignment at chr2:961488..963128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03590.1 ID=NO02G03590.1|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at chr2:961488..963128- (Nannochloropsis oceanica)
TATTCGTGCTTGTGTTTTGGGTGAGTGTTTGGTTGTATAGTAGGTGAGTG
CACTATCAATATTACGGGATAGTCGTCAATCGTCCTGTCATGCGACCATG
CACGACTAATAGTCGTCATACCCACCTGAGGAAAGCGAAGAAAAAGCGTG
ACCGCAACCCAAAAGCTCAAGCGGGGTGGACTCGCGTCACGTTGACCTCC
CTGCCTCTACCACAGCTATGATAATCACACCCCGCGCTCATTTCCAACCA
ACCCCACGACAGGAAGCGCACATGTATACAAAGCTCTCCTTCCCCACGCG
GCGATGGTTCCTTACAGCCTTGGCACGGAGGCGCTAGCTAGCGATGGACC
AGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAATGACCAC
ATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGATTGAAGA
GCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTCGTCGACC
CTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCTGCACCGT
ACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCATGCGGCA
AGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCACTTTCCAG
TTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTCCGCACCC
GTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCAGGCTACT
GCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGACGGCAAGA
TTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAATGAGGAG
GAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCGAGCAGGC
GAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTGCTGGGGT
ATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCGCCGAAAT
GCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGAGACACGC
GAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACAGAAAGGA
CCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTATGCACGC
AACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAATACGGGCC
ATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGCTTTTTTA
AGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCAAAACTTC
CAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTCTGTACCC
ATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACCGAGGAAC
GCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACCGAAGTCA
ACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGAGCGAAAT
CCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTGTGCGAGA
TTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACCTGGGTCT
CAAGAAGAACAAGCAAAGAAATAAATTTATTACCACCAGAA
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Coding sequence (CDS) from alignment at chr2:961488..963128-

>NO02G03590.1 ID=NO02G03590.1|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr2:961488..963128- (Nannochloropsis oceanica)
ATGGACCAGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAA
TGACCACATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGA
TTGAAGAGCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTC
GTCGACCCTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCT
GCACCGTACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCA
TGCGGCAAGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCAC
TTTCCAGTTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTC
CGCACCCGTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCA
GGCTACTGCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGAC
GGCAAGATTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAA
TGAGGAGGAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCG
AGCAGGCGAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTG
CTGGGGTATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCG
CCGAAATGCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGA
GACACGCGAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACA
GAAAGGACCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTA
TGCACGCAACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAAT
ACGGGCCATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGC
TTTTTTAAGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCA
AAACTTCCAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTC
TGTACCCATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACC
GAGGAACGCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACC
GAAGTCAACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGA
GCGAAATCCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTG
TGCGAGATTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACC
TGGGTCTCAAGAAGAACAAGCAAAGAAATAA
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Synonyms
Publications