NO02G03560.1, NO02G03560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03560.1
Unique NameNO02G03560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2039
Alignment locationchr2:955326..957453 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:955326..957453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G03560.1 vs.
Match: EWM29475.1 (hypothetical protein Naga_100128g9 [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 5.600e-22
Identity = 128/459 (27.89%), Postives = 190/459 (41.39%), Query Frame = 0 
Query:  143 KLTSTFPKDLRYFSISTYDENGMPSDTLTDYEVLPTTGTNPYAFRDAHQTLPEGEAGTFEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVK--GGCAVVLIFRLFHVRDGYEPFDLATYEDPTVVWGNV-APAKLFYGNQSAGWMELFPCGRPAMNFTTQMFAEEARRRL----TSFRYNLPRHEALKNVNGNAFVLPVDDNQGLFSNADSNYMFAGSYYEAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPADYDIRYFGISTVDMAGGKPTLDSVADIDIENFYTINGALSWTGRNYSIITGPSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVRYMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTCYDPDWVAGKMKENVATIQYYLCDISAPESQRLTPFGRTLNKRRKDWI 595
            K++++FP+ + YFS  TY   G P  +L D  + P+ G NPY      +T  EG AGT+E+Y+T DG   N    N++  L ++     +AA    +      +VV++ RL+            T E P  VWG V  P   +  +    W EL PC     + TT+     A R++      FRY +   +  +  + +       D+  LF   D N    G++              I G  P T T GL  GPR V    +Y  RY+  +  D+    PT  S+   D+ENFY       W  R Y I+   S DI + CGL     +LFL       L N  P        P   A + R MLA        +   SD +S+E+  + C        GKE      C   D++   + +   ++Q Y CD++       TPF       R+D+I
Sbjct:   56 KISASFPRVV-YFSYETYSLRGHPLTSLPDLRIDPSWGKNPY----REETTEEG-AGTYEIYVTRDG---NKGWPNEVRGLSEDHTNATQAAFSRVMDFVDNLSVVML-RLY------------TTEQPPSVWGGVDRPVISYTDDLGQTWKELQPC-----SDTTRYQFNRAMRQIGWTVYDFRYLIYHSQWYRLRSCHLLSKREADHPALF--PDVNVQLGGNFVMV-----------IEGTAPLTAT-GLFEGPRPVWNVTNYSTRYWSFAAADVFVPGPTYSSLTAQDMENFY----GKGW-DRRYKIVGATSIDIVKACGL-DDPHALFLPYKNE--LMNNNP--------PAVPAVIEREMLARH----MAMGLPSDKQSIEYVTSNC--------GKEN----KCLSIDFMKASLGDQYPSLQVYTCDVATGIK---TPF--VYQPYRRDYI 436
The following BLAST results are available for this feature:
BLAST of NO02G03560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29475.15.600e-2227.89hypothetical protein Naga_100128g9 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03560NO02G03560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03560.1NO02G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03560.1.cds1NO02G03560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03560.1 ID=NO02G03560.1|Name=NO02G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2039bp
TTCCTCCTTTGCCCCCTTCCCACTAGGCAAAAAAAGCCCAAGCCCCACCC
TTTAGCACAAGAATTTCTCTCGAGTAGTTGCACATGCGTGTAGCAACGAG
CCGCCCCCTCTGGCTCTTCACGCTGGTGGTGGGCGGTGGGACCGCCGCAT
TACAACTTCGCCTCTTCAACAGCACCAGCAGACGCAGCCCACAAGAGCAA
TACAGGACGGACGCTCAATACAAGGCTCGCTTCCTTGTAGAAGAGGATTT
TAGACAAGAGCGACAGCCACTCAACAGTCCAAATTTCCAGAAGGACGTGA
CTGACTGGCTCCCTTATCTTCCCAAGGTAAAGCGGTGTATGCAGAAGCAA
GCTCACTTTCCAAATTCTTGCGATCACGGTCACACGCACCAACCTTACAG
TGCTCATGGCAGCTTCTTGCTACGATCCAGACCTTCCCCATCGCACTGCC
GGAGTTGGCCTGTGTGTACCTTACCACTGTTGCCTAACTTGACTTCCTGG
AATCATGTCAAGCTCACGAGTACGTTTCCCAAGGACCTGCGCTATTTCTC
CATCTCCACCTACGACGAAAATGGCATGCCCTCTGACACTTTGACGGATT
ACGAGGTGCTGCCTACAACGGGAACTAATCCGTACGCGTTCCGTGACGCC
CACCAGACCCTGCCGGAAGGAGAGGCGGGCACGTTCGAGGTCTACATCAC
CTTAGATGGCAAGGTACCAAACCTTCCCAGAGAGAATCAATTGGCAGTGC
TGGGAAAGAACGTGGATGCGAAGGATCGTGCCGCCTGCGACACGTCCGTC
AAAGGTGGGTGCGCAGTAGTTCTCATTTTCCGCCTCTTTCACGTTCGGGA
TGGCTATGAGCCTTTCGATCTTGCTACCTACGAGGACCCCACAGTGGTAT
GGGGCAACGTGGCCCCTGCCAAGCTGTTTTACGGTAATCAATCGGCAGGC
TGGATGGAATTGTTCCCCTGTGGTCGCCCGGCCATGAATTTCACGACGCA
AATGTTTGCCGAGGAGGCGCGCAGAAGGTTGACGTCCTTCCGGTACAACC
TACCCCGACATGAAGCCCTCAAGAATGTGAACGGCAACGCCTTTGTCCTG
CCCGTCGATGACAATCAAGGGCTATTTAGCAACGCCGACTCCAATTATAT
GTTTGCGGGTAGTTACTACGAGGCCAAGCCCGAGGGGCCGGTATACCTGC
TGGGCCACATCACAGGGCGTATGCCCTTCACGCCAACCGGTGGGTTGGAG
CGTGGGCCTCGGTTTGTGGACGTACCAGCCGATTATGACATTCGGTACTT
TGGCATTTCCACAGTGGATATGGCGGGCGGGAAGCCGACATTGGACAGTG
TGGCTGATATTGACATCGAGAACTTTTACACAATAAACGGGGCGTTATCA
TGGACCGGCCGTAACTATTCCATCATCACGGGGCCCAGCAAGGACATTGC
CGAGAAGTGCGGATTGTTCCAGGCCTCGAGGAGTTTGTTTTTGTCCACCG
CCACGCCTGCCTACTTGCAAAACGAGGTTCCCACTGGCGACCTCATCCTG
CCTTTGCCGACCTATGTCGCCTACGTCGTGCGCTACATGCTCGCCTCGCG
CAATCACACCGATGCTTATATAGACGCAGCTTCTGACGCCAAGTCTGTGG
AGTGGACCAGAAATGCTTGTGTCGCCGCGGATGAGCACATTCAGGGTAAG
GAGGAGCACGTCCATCTTACGTGTTACGACCCGGATTGGGTGGCAGGGAA
GATGAAGGAAAACGTGGCGACCATCCAATATTACCTGTGCGACATCAGCG
CGCCCGAAAGCCAGCGCTTGACTCCCTTCGGCCGTACACTCAACAAGCGC
CGTAAGGACTGGATCGAAGGTGAAGTAGAGGGGGGGAAAGGATGATAAAA
GAAGAGCAAGTAATACAAATAAATTACAACAACCACTACGAAGAACATAA
ATGAATGATTGTGAAACAAAGAGACTGCTTACTCTTCTTCCATTTCTGTG
TTTCTTCTTTCTTCAATTGTCATTGTATAAAAAATAAAC
back to top

protein sequence of NO02G03560.1

>NO02G03560.1-protein ID=NO02G03560.1-protein|Name=NO02G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MRVATSRPLWLFTLVVGGGTAALQLRLFNSTSRRSPQEQYRTDAQYKARF
LVEEDFRQERQPLNSPNFQKDVTDWLPYLPKVKRCMQKQAHFPNSCDHGH
THQPYSAHGSFLLRSRPSPSHCRSWPVCTLPLLPNLTSWNHVKLTSTFPK
DLRYFSISTYDENGMPSDTLTDYEVLPTTGTNPYAFRDAHQTLPEGEAGT
FEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVKGGCAVVLIFR
LFHVRDGYEPFDLATYEDPTVVWGNVAPAKLFYGNQSAGWMELFPCGRPA
MNFTTQMFAEEARRRLTSFRYNLPRHEALKNVNGNAFVLPVDDNQGLFSN
ADSNYMFAGSYYEAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPAD
YDIRYFGISTVDMAGGKPTLDSVADIDIENFYTINGALSWTGRNYSIITG
PSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVR
YMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTCYDP
DWVAGKMKENVATIQYYLCDISAPESQRLTPFGRTLNKRRKDWIEGEVEG
GKG*
back to top

mRNA from alignment at chr2:955326..957453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03560.1 ID=NO02G03560.1|Name=NO02G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp|location=Sequence derived from alignment at chr2:955326..957453- (Nannochloropsis oceanica)
TTCCTCCTTTGCCCCCTTCCCACTAGGCAAAAAAAGCCCAAGCCCCACCC
TTTGTAAGTCCCCTTCCCTCCCTCCTTCTTCTTTCGCACATCACTGGCCC
CTCACCACATAGTTCCCACTTATCCACTTTGATCCAATACAGAGCACAAG
AATTTCTCTCGAGTAGTTGCACATGCGTGTAGCAACGAGCCGCCCCCTCT
GGCTCTTCACGCTGGTGGTGGGCGGTGGGACCGCCGCATTACAACTTCGC
CTCTTCAACAGCACCAGCAGACGCAGCCCACAAGAGCAATACAGGACGGA
CGCTCAATACAAGGCTCGCTTCCTTGTAGAAGAGGATTTTAGACAAGAGC
GACAGCCACTCAACAGTCCAAATTTCCAGAAGGACGTGACTGACTGGCTC
CCTTATCTTCCCAAGGTAAAGCGGTGTATGCAGAAGCAAGCTCACTTTCC
AAATTCTTGCGATCACGGTCACACGCACCAACCTTACAGTGCTCATGGCA
GCTTCTTGCTACGATCCAGACCTTCCCCATCGCACTGCCGGAGTTGGCCT
GTGTGTACCTTACCACTGTTGCCTAACTTGACTTCCTGGAATCATGTCAA
GCTCACGAGTACGTTTCCCAAGGACCTGCGCTATTTCTCCATCTCCACCT
ACGACGAAAATGGCATGCCCTCTGACACTTTGACGGATTACGAGGTGCTG
CCTACAACGGGAACTAATCCGTACGCGTTCCGTGACGCCCACCAGACCCT
GCCGGAAGGAGAGGCGGGCACGTTCGAGGTCTACATCACCTTAGATGGCA
AGGTACCAAACCTTCCCAGAGAGAATCAATTGGCAGTGCTGGGAAAGAAC
GTGGATGCGAAGGATCGTGCCGCCTGCGACACGTCCGTCAAAGGTGGGTG
CGCAGTAGTTCTCATTTTCCGCCTCTTTCACGTTCGGGATGGCTATGAGC
CTTTCGATCTTGCTACCTACGAGGACCCCACAGTGGTATGGGGCAACGTG
GCCCCTGCCAAGCTGTTTTACGGTAATCAATCGGCAGGCTGGATGGAATT
GTTCCCCTGTGGTCGCCCGGCCATGAATTTCACGACGCAAATGTTTGCCG
AGGAGGCGCGCAGAAGGTTGACGTCCTTCCGGTACAACCTACCCCGACAT
GAAGCCCTCAAGAATGTGAACGGCAACGCCTTTGTCCTGCCCGTCGATGA
CAATCAAGGGCTATTTAGCAACGCCGACTCCAATTATATGTTTGCGGGTA
GTTACTACGAGGCCAAGCCCGAGGGGCCGGTATACCTGCTGGGCCACATC
ACAGGGCGTATGCCCTTCACGCCAACCGGTGGGTTGGAGCGTGGGCCTCG
GTTTGTGGACGTACCAGCCGATTATGACATTCGGTACTTTGGCATTTCCA
CAGTGGATATGGCGGGCGGGAAGCCGACATTGGACAGTGTGGCTGATATT
GACATCGAGAACTTTTACACAATAAACGGGGCGTTATCATGGACCGGCCG
TAACTATTCCATCATCACGGGGCCCAGCAAGGACATTGCCGAGAAGTGCG
GATTGTTCCAGGCCTCGAGGAGTTTGTTTTTGTCCACCGCCACGCCTGCC
TACTTGCAAAACGAGGTTCCCACTGGCGACCTCATCCTGCCTTTGCCGAC
CTATGTCGCCTACGTCGTGCGCTACATGCTCGCCTCGCGCAATCACACCG
ATGCTTATATAGACGCAGCTTCTGACGCCAAGTCTGTGGAGTGGACCAGA
AATGCTTGTGTCGCCGCGGATGAGCACATTCAGGGTAAGGAGGAGCACGT
CCATCTTACGTGTTACGACCCGGATTGGGTGGCAGGGAAGATGAAGGAAA
ACGTGGCGACCATCCAATATTACCTGTGCGACATCAGCGCGCCCGAAAGC
CAGCGCTTGACTCCCTTCGGCCGTACACTCAACAAGCGCCGTAAGGACTG
GATCGAAGGTGAAGTAGAGGGGGGGAAAGGATGATAAAAGAAGAGCAAGT
AATACAAATAAATTACAACAACCACTACGAAGAACATAAATGAATGATTG
TGAAACAAAGAGACTGCTTACTCTTCTTCCATTTCTGTGTTTCTTCTTTC
TTCAATTGTCATTGTATAAAAAATAAAC
back to top

Coding sequence (CDS) from alignment at chr2:955326..957453-

>NO02G03560.1 ID=NO02G03560.1|Name=NO02G03560.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr2:955326..957453- (Nannochloropsis oceanica)
ATGCGTGTAGCAACGAGCCGCCCCCTCTGGCTCTTCACGCTGGTGGTGGG
CGGTGGGACCGCCGCATTACAACTTCGCCTCTTCAACAGCACCAGCAGAC
GCAGCCCACAAGAGCAATACAGGACGGACGCTCAATACAAGGCTCGCTTC
CTTGTAGAAGAGGATTTTAGACAAGAGCGACAGCCACTCAACAGTCCAAA
TTTCCAGAAGGACGTGACTGACTGGCTCCCTTATCTTCCCAAGGTAAAGC
GGTGTATGCAGAAGCAAGCTCACTTTCCAAATTCTTGCGATCACGGTCAC
ACGCACCAACCTTACAGTGCTCATGGCAGCTTCTTGCTACGATCCAGACC
TTCCCCATCGCACTGCCGGAGTTGGCCTGTGTGTACCTTACCACTGTTGC
CTAACTTGACTTCCTGGAATCATGTCAAGCTCACGAGTACGTTTCCCAAG
GACCTGCGCTATTTCTCCATCTCCACCTACGACGAAAATGGCATGCCCTC
TGACACTTTGACGGATTACGAGGTGCTGCCTACAACGGGAACTAATCCGT
ACGCGTTCCGTGACGCCCACCAGACCCTGCCGGAAGGAGAGGCGGGCACG
TTCGAGGTCTACATCACCTTAGATGGCAAGGTACCAAACCTTCCCAGAGA
GAATCAATTGGCAGTGCTGGGAAAGAACGTGGATGCGAAGGATCGTGCCG
CCTGCGACACGTCCGTCAAAGGTGGGTGCGCAGTAGTTCTCATTTTCCGC
CTCTTTCACGTTCGGGATGGCTATGAGCCTTTCGATCTTGCTACCTACGA
GGACCCCACAGTGGTATGGGGCAACGTGGCCCCTGCCAAGCTGTTTTACG
GTAATCAATCGGCAGGCTGGATGGAATTGTTCCCCTGTGGTCGCCCGGCC
ATGAATTTCACGACGCAAATGTTTGCCGAGGAGGCGCGCAGAAGGTTGAC
GTCCTTCCGGTACAACCTACCCCGACATGAAGCCCTCAAGAATGTGAACG
GCAACGCCTTTGTCCTGCCCGTCGATGACAATCAAGGGCTATTTAGCAAC
GCCGACTCCAATTATATGTTTGCGGGTAGTTACTACGAGGCCAAGCCCGA
GGGGCCGGTATACCTGCTGGGCCACATCACAGGGCGTATGCCCTTCACGC
CAACCGGTGGGTTGGAGCGTGGGCCTCGGTTTGTGGACGTACCAGCCGAT
TATGACATTCGGTACTTTGGCATTTCCACAGTGGATATGGCGGGCGGGAA
GCCGACATTGGACAGTGTGGCTGATATTGACATCGAGAACTTTTACACAA
TAAACGGGGCGTTATCATGGACCGGCCGTAACTATTCCATCATCACGGGG
CCCAGCAAGGACATTGCCGAGAAGTGCGGATTGTTCCAGGCCTCGAGGAG
TTTGTTTTTGTCCACCGCCACGCCTGCCTACTTGCAAAACGAGGTTCCCA
CTGGCGACCTCATCCTGCCTTTGCCGACCTATGTCGCCTACGTCGTGCGC
TACATGCTCGCCTCGCGCAATCACACCGATGCTTATATAGACGCAGCTTC
TGACGCCAAGTCTGTGGAGTGGACCAGAAATGCTTGTGTCGCCGCGGATG
AGCACATTCAGGGTAAGGAGGAGCACGTCCATCTTACGTGTTACGACCCG
GATTGGGTGGCAGGGAAGATGAAGGAAAACGTGGCGACCATCCAATATTA
CCTGTGCGACATCAGCGCGCCCGAAAGCCAGCGCTTGACTCCCTTCGGCC
GTACACTCAACAAGCGCCGTAAGGACTGGATCGAAGGTGAAGTAGAGGGG
GGGAAAGGATGA
back to top
Synonyms
Publications