NO02G03540.1, NO02G03540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03540.1
Unique NameNO02G03540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length829
Alignment locationchr2:948564..949537 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:948564..949537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G03540.1 vs.
Match: XP_012204814.1 (hypothetical protein SPRG_10368 [Saprolegnia parasitica CBS 223.65]; KDO24553.1 hypothetical protein SPRG_10368 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-8
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 0 
Query:   59 DLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLLAALEKRA 155
            D   S+ L + +  CF+WIG A +A  +GSL  A  TPYD  P++++LL    D  + Q +A RL  +T +QVF SC+LP  P     LAA  +RA
Sbjct:   35 DQAFSVQLWLLEHACFVWIGLASDAAALGSLSTAIKTPYDPFPLAASLLGGHGDEAEAQ-IAQRLVLKTKKQVFVSCNLPDDPE----LAAFVERA 125
The following BLAST results are available for this feature:
BLAST of NO02G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_012204814.12.800e-841.67hypothetical protein SPRG_10368 [Saprolegnia paras... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03540NO02G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03540.1NO02G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03540.1.cds1NO02G03540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03540.1.cds2NO02G03540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03540.1 ID=NO02G03540.1|Name=NO02G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=829bp
CAGATGTGGTCTGCCACTTCCAGCTTTTGATTGCTCTCGAACACGGCTTT
GTTTTCCTAGTCTCAATTATTATGTCGGAGCAAATCTAAAAGCTGATTTA
AATGGTGGTGCTGGATTTCCGTAAAAATGACAATTATGGTATGTTACGCA
ATAATGGTCCCGGGGGCCCCACCCCAACAAATGCGATGGGGGGCATTCCG
CAGCTGCAGGACCTCAATTGTTCAGAATAACTTGTTCGTCACCACAGATA
AAACACAGTTACAGGAGCATCTTCATCAAGCCGACAGATGGCTGAGGAGT
CTCCTGTACCCGCGCCGGCGAACCGCATGGCTCCTCCTGCTTCGATGAGT
ACCTCGTCCTCCACCTGCGCATCATCGTCGTTATCGTCATTGGCCCCACA
CACCGCTCCTCCAAGGGAGCATATGCAGCTGTACACGGCGACGGAGCGGA
GCACGGAGGGGGATTTGGTGGCGTCAATGCATCTACTCGTTGGGGACGGG
TGCTGCTTTATCTGGATTGGAGAAGCCGGCAATGCCCCGCCCATGGGCTC
GTTATGTGTGGCAACCATGACCCCTTATGACAACCTCCCCGTATCCTCCA
CCCTCTTGCGGGATGCCCCCGACAATGATCAGTGCCAGTCAATGGCACAT
CGTTTGGCGAAGCGGACGGGGCAGCAGGTCTTTAGTAGTTGCAGTCTGCC
GGCCTCCCCCGCCCACTTGCCTCTGCTGGCGGCTTTGGAGAAGCGGGCGT
ATGAAGTTTTGACAGAGCCAAATTGATGATATAGGCCTACGCGAAGAAAG
AAAATGGAGAAGATACTTCCAGCTTTGCG
back to top

protein sequence of NO02G03540.1

>NO02G03540.1-protein ID=NO02G03540.1-protein|Name=NO02G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAEESPVPAPANRMAPPASMSTSSSTCASSSLSSLAPHTAPPREHMQLYT
ATERSTEGDLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNL
PVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLLAAL
EKRAYEVLTEPN*
back to top

mRNA from alignment at chr2:948564..949537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03540.1 ID=NO02G03540.1|Name=NO02G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=974bp|location=Sequence derived from alignment at chr2:948564..949537+ (Nannochloropsis oceanica)
CAGATGTGGTCTGCCACTTCCAGCTTTTGATTGCTCTCGAACACGGCTTT
GTTTTCCTAGTCTCAATTATTATGTCGGAGCAAATCTAAAAGCTGATTTA
AATGGTGGTGCTGGATTTCCGTAAAAATGACAATTATGGTATGTTACGCA
ATAATGGTCCCGGGGGCCCCACCCCAACAAATGCGATGGGGGGCATTCCG
CAGCTGCAGGACCTCAATTGTTCAGAATAACTTGTTCGTCACCACAGATA
AAACACAGTTACAGGAGCATCTTCATCAAGCCGACAGATGGCTGAGGAGT
CTCCTGTACCCGCGCCGGCGAACCGCATGGCTCCTCCTGCTTCGATGAGT
ACCTCGTCCTCCACCTGCGCATCATCGTCGTTATCGTCATTGGGTAAGTC
ATCCTGGCCTGGTCTGGCGCTCCTTTTATGGTTTCGATTGGGTGGCGGTA
GGCTACACTTCAAAATCCTTGTAAGCCACGGTTTTTGCACCCCTCTAAAA
ACTCCCCTTTTCTTACTCCCCTTCCGCCCTCCCTACAGCCCCACACACCG
CTCCTCCAAGGGAGCATATGCAGCTGTACACGGCGACGGAGCGGAGCACG
GAGGGGGATTTGGTGGCGTCAATGCATCTACTCGTTGGGGACGGGTGCTG
CTTTATCTGGATTGGAGAAGCCGGCAATGCCCCGCCCATGGGCTCGTTAT
GTGTGGCAACCATGACCCCTTATGACAACCTCCCCGTATCCTCCACCCTC
TTGCGGGATGCCCCCGACAATGATCAGTGCCAGTCAATGGCACATCGTTT
GGCGAAGCGGACGGGGCAGCAGGTCTTTAGTAGTTGCAGTCTGCCGGCCT
CCCCCGCCCACTTGCCTCTGCTGGCGGCTTTGGAGAAGCGGGCGTATGAA
GTTTTGACAGAGCCAAATTGATGATATAGGCCTACGCGAAGAAAGAAAAT
GGAGAAGATACTTCCAGCTTTGCG
back to top

Coding sequence (CDS) from alignment at chr2:948564..949537+

>NO02G03540.1 ID=NO02G03540.1|Name=NO02G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr2:948564..949537+ (Nannochloropsis oceanica)
ATGGCTGAGGAGTCTCCTGTACCCGCGCCGGCGAACCGCATGGCTCCTCC
TGCTTCGATGAGTACCTCGTCCTCCACCTGCGCATCATCGTCGTTATCGT
CATTGGCCCCACACACCGCTCCTCCAAGGGAGCATATGCAGCTGTACACG
GCGACGGAGCGGAGCACGGAGGGGGATTTGGTGGCGTCAATGCATCTACT
CGTTGGGGACGGGTGCTGCTTTATCTGGATTGGAGAAGCCGGCAATGCCC
CGCCCATGGGCTCGTTATGTGTGGCAACCATGACCCCTTATGACAACCTC
CCCGTATCCTCCACCCTCTTGCGGGATGCCCCCGACAATGATCAGTGCCA
GTCAATGGCACATCGTTTGGCGAAGCGGACGGGGCAGCAGGTCTTTAGTA
GTTGCAGTCTGCCGGCCTCCCCCGCCCACTTGCCTCTGCTGGCGGCTTTG
GAGAAGCGGGCGTATGAAGTTTTGACAGAGCCAAATTGA
back to top
Synonyms
Publications