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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:937489..941327 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03510.1 vs.
Match: EWM30312.1 (ring u-box domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 305.4 bits (781), Expect = 2.500e-79 Identity = 180/363 (49.59%), Postives = 228/363 (62.81%), Query Frame = 0
Query: 1 MGLMHSSHNKRAHVIKELERFTKPTGLYPSCAWEDKVVRKLILDGKLAPRFAGLEDKHNGTKECPICFLRHVVLNRTSCCRHGLCTECYLQVRKPKG-TSPCPYCQNSKLQILYGTDDEEKMATQELANIRHYDVLTASPQSIPVAMFSSSRSKEEAQEAWAVATQTSSGPAAHAVASPVAPCAASGSGYTA----------KNSRVESESHINSSRTTAGSLRGSSSSKNSYMGVIPYATVKQRSQIEEEMRKQHLTPTLGEELGENTTAAAAAATALLFSFRGADCQG---GGGAGAGGERVGRGGGEEVERRAAQAQSYPRAHEDFVMRRALLESFGVPAHLQHVEDLMLMEAIQRSLEE 350
MGL HSS KRAH++KELERF+KP GLYPSC WED+ VRKLIL+G++AP F G+EDK GT+ECPICFLR+V+LN T CC H LCTECYLQ++ PK S CPYC + KLQILYGTDDEEKM QE ANIR YD+L+ + Q +P A FSS ++K E + AW Q P + A P++ AASGSG A ++ H+++SR+T ++ S+ +Y + ATVK+R +EEE +KQHL P+ E + AA +FSFRG C+ G G G G G+ A++ FVMRR +LE G+PAHLQHVEDLMLMEAIQRSLE+
Sbjct: 1 MGLAHSS--KRAHIMKELERFSKPCGLYPSCTWEDRTVRKLILEGRIAPCFPGMEDKGCGTEECPICFLRYVILNCTRCCNHPLCTECYLQLQAPKDLPSSCPYCNHPKLQILYGTDDEEKMMAQEFANIRLYDLLSMTTQPVPTAAFSSGKAKIEGRTAWVGGEQAGLHPGS---ARPLSFVAASGSGRCADVAVRNKERGTSNDTRRNCHVSASRSTTTAIYSSA----TYKQPVSLATVKERHNVEEEAKKQHLIPS-----QEARNESMAATVGEIFSFRGTGCRSISTGRSIAVGRVEHGIGSGQ-------------HANDHFVMRRRVLEPVGIPAHLQHVEDLMLMEAIQRSLED 336
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03510.1 ID=NO02G03510.1|Name=NO02G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3500bp TACCTTTATGCCAACACCCCTCCTCCCGACCCCTCCCCTCCATCCGCACC AGCACCTGCAGCAGCCGCGGCCTTCTGTTGCGCTGCCTGAATCTCCTTGG GACTCTGTGCTCGAATGTTGTACTTTTCCCGCCATTCCCTCGTTTGCTTC TGCTTCTTCACCAAGGCCTCGTCCAGTTGAGGGACAATCGTCCTGAGCTT TGACGCTGTTTCTTTTAGAATAGGCAAGACCTCGGCAACCGTTCGCTCCA TTAAGACCCCCCCGACCAATCTGTACGCCTTGCGGGACGGGTCCAGCGGC GTTAGCTGTTGGATGACCAGCTCGTGCTCACTGCACTCTTGCTCCAGCTC GTGGAGCTTCGTCGCCATCTGTTTGTGTACAGGTCGGAAGAGAGATGGAT GTGTGAGCATTTGTCATAGATCATAACAACGGAGGGAGTAGGTTGAAGAG TAGATTGATCAGTCAAGCAGTCACAAAGAGGAGCAAGGTTCGGGCAGCAA CTTGTCCTTCCGGCACATTTTCCGCTGTAGCACAAAACCATCAAGTATGG GAGAGGGCCCAACACATGACTTTTTTGGCTAATGTTTGTCCTTTCTAAGT TTATGGTCACTGATTGACATCTATGTTTCCATTTATGGGTACACGTTCAT TCCACTAAGAGATTGAGAAAAACATAGGGTTTCGCTGTATAAATGGATTG ATCCTGAAAATTCTCTTTCTCCAGGCCCCAGGGTGCTCGAAGCCAAACCA TCATAGCTAACCAAGATTGTCATTCATCAGCCTCCCTAGCCCGCTTATTT ACACAATAACGTACCTGCTGACATTCTCCTTGAAGTCTCTGGAACACCTG TGCTTGGCATGGATGGTTGGAGTATGAGGGGTACCGGGCAGGGCGATGGG GACAAGGGGTTTTCGAGCATTTGCACTCCACTCAACAGTTCCAAGCACAA TTAAAAAAGTACCTGGATTATGGCACTAGGATCAGAGAGCTCTAAATTGC TGCCGGCATCCATGACTTTCCGTTCCTGTGAAATTTTGTATGGCGTGTGG CATGGAGGGAGAAGAGACGTGGACCGTGAAATATGCAATATATACATCTT ATCGTCTATCCCCTTCTTCGCCTTTCAGAAGCTTTGTTGGAAAAAAACTC TACAGGTTTCCAGCACCCCCATGCAGCCAATTTGCACGTCGCAGCACCTG AGTTGGTTCTGAGCATCTCGACTTAGACGCAAAATAAAATATCACTCTGA CTCTCAGAACGAAAGGAAGCTAGCCTCACCAAGCGGCAGGTCGTCGCTTG AAGCGGGGCCAGGCGAGCGGGGCGCAATAATTCTGACTCGAAATTACGAA GTATGCTCTTCCTTATACCACCTTCGCACTCACCCCTGTGTGCACCTACA TAACCATCCGTAGATTTCGTTGCCATAGCGCCCATACCGCCTCGCGGGCC CGCCTGCGAGGCAATTACGCTTCACGTCATCATCACTTTGGCAACAAGCT TCCAGATTCCACCACACACAGTAACATGGGGCTAATGCACTCCAGTCACA ACAAGCGGGCACACGTGATCAAGGAATTGGAGAGATTCACCAAACCTACT GGCCTGTATCCGTCTTGCGCCTGGGAGGACAAGGTAGTGCGCAAGCTCAT CCTTGACGGCAAACTTGCTCCACGCTTCGCCGGTTTGGAAGACAAGCACA ACGGCACTAAGGAATGTCCCATTTGCTTCTTGCGCCACGTGGTACTCAAC CGCACGAGCTGCTGTCGTCACGGATTGTGTACTGAATGCTATTTGCAGGT ACGGAAGCCAAAGGGGACCTCTCCCTGTCCTTATTGCCAAAATTCCAAGC TCCAAATTCTCTACGGGACGGACGACGAGGAAAAAATGGCAACTCAAGAG CTAGCCAACATTCGTCATTATGACGTTTTGACGGCCTCGCCTCAGTCGAT CCCTGTTGCTATGTTTAGCAGCAGTAGATCGAAGGAGGAGGCTCAGGAGG CGTGGGCCGTTGCGACGCAAACATCCTCTGGACCAGCCGCTCACGCTGTT GCTTCTCCTGTTGCCCCGTGTGCGGCATCAGGCAGTGGTTATACGGCCAA GAACAGTAGAGTTGAAAGTGAGAGTCACATCAATTCCTCCCGCACCACTG CCGGCAGTCTAAGAGGCAGTAGCAGCAGCAAGAATAGCTACATGGGCGTC ATTCCATATGCGACCGTCAAGCAGCGGAGTCAGATTGAAGAGGAAATGCG GAAGCAGCACCTCACCCCAACTTTAGGAGAAGAACTAGGAGAGAATACGA CGGCAGCAGCAGCGGCAGCAACAGCATTGCTCTTTTCTTTTCGAGGCGCA GACTGCCAGGGCGGTGGCGGCGCAGGTGCCGGTGGAGAAAGAGTAGGGCG TGGAGGAGGAGAAGAGGTGGAGCGACGGGCGGCGCAAGCGCAATCGTACC CGCGAGCGCACGAGGATTTTGTGATGCGCCGGGCCTTGCTGGAGTCCTTT GGAGTGCCGGCTCATTTGCAGCACGTGGAGGACTTGATGTTGATGGAGGC GATACAACGGTCGTTGGAAGAGACGGGAGATGGTGCTGGTGGAGGAGGAG GAGGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGGAAGGGAAGGAGCAGGA GGGAGGGGGGGAGGGAAGGAGGAAGTTGAAAGGGGATTGGGTGGTTAATA AGCCGTGGTAGGTGTGTAAGCTGGAGGAGGCTAAGTTGAGAGGCGGAGAG ATGGGGGTGGTGGGCGGTAATGTTGTGTAAAGGAGTGTAAATATGTAGAC GTATTGGACAGGACGGGAAGTTGAGGCGGTGAAGAAAAGATAGGAGGGGT GGAGGAGGAGGCGGTGGTGCAGCAGCACACCACAACAACCACCACCACCA CCATTACCACCTGCAGCAGTAACAGCGGCAGCAACAGTAGCATCAGCACG GAGAGATTTGAGGATATCGGTAACGACATCACAGGTAAAAAAGATCTCGA GGCACGGATGAAGGACGTCGTCTTATATGATGAGAGGTGAGAAGGTGGGG CCTGTTTCGTAAATCTTTGTCTTACTTCCTCGAATAACATACATATATAC AACCAAGGAAAAGAAATCCCTCAAGATGACGACAAAGATAAGGAGGAGGG GGGAGAGTCTGAGAGGGAGGAGAAGAAGAAGCGAGTGTAAGGGAAAGGCT CCATGGTCCGATATGCGAGTAAATTTCTGAGATTTGTGTAGGTGTTCATT TGTTAAAAACGAGAGAGATGAAAGAAAGAAGGAAAATAAAAAGGGTAAGA TGTAATGGAAAGATATCACAGACAGGAATGCATAGAAAAAGAGAACCAGT CAATCATACAATCAATCAAACACGTACATTCAAAGCGAGATAAACATGAA GCCCTGGAGCGACTTGCCTGATTATAGCGCTCACATTCAGGAAAAGGCAG CAGTCGGGCCGAGAGCTACATAAAGAAGTAAATCAACGAAGCAAGGAAAA back to topprotein sequence of NO02G03510.1 >NO02G03510.1-protein ID=NO02G03510.1-protein|Name=NO02G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp MGLMHSSHNKRAHVIKELERFTKPTGLYPSCAWEDKVVRKLILDGKLAPR FAGLEDKHNGTKECPICFLRHVVLNRTSCCRHGLCTECYLQVRKPKGTSP CPYCQNSKLQILYGTDDEEKMATQELANIRHYDVLTASPQSIPVAMFSSS RSKEEAQEAWAVATQTSSGPAAHAVASPVAPCAASGSGYTAKNSRVESES HINSSRTTAGSLRGSSSSKNSYMGVIPYATVKQRSQIEEEMRKQHLTPTL GEELGENTTAAAAAATALLFSFRGADCQGGGGAGAGGERVGRGGGEEVER RAAQAQSYPRAHEDFVMRRALLESFGVPAHLQHVEDLMLMEAIQRSLEET GDGAGGGGGGGEGGGEGGGGREGAGGRGGGKEEVERGLGG* back to topmRNA from alignment at chr2:937489..941327+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03510.1 ID=NO02G03510.1|Name=NO02G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3839bp|location=Sequence derived from alignment at chr2:937489..941327+ (Nannochloropsis oceanica) TACCTTTATGCCAACACCCCTCCTCCCGACCCCTCCCCTCCATCCGCACC
AGCACCTGCAGCAGCCGCGGCCTTCTGTTGCGCTGCCTGAATCTCCTTGG
GACTCTGTGCTCGAATGTTGTACTTTTCCCGCCATTCCCTCGTTTGCTTC
TGCTTCTTCACCAAGGCCTCGTCCAGTTGAGGGACAATCGTCCTGAGCTT
TGACGCTGTTTCTTTTAGAATAGGCAAGACCTCGGCAACCGTTCGCTCCA
TTAAGACCCCCCCGACCAATCTGTACGCCTTGCGGGACGGGTCCAGCGGC
GTTAGCTGTTGGATGACCAGCTCGTGCTCACTGCACTCTTGCTCCAGCTC
GTGGAGCTTCGTCGCCATCTGTTTGTGTACAGGTCGGAAGAGAGATGGAT
GTGTGAGCATTTGTCATAGATCATAACAACGGAGGGAGTAGGTTGAAGAG
TAGATTGATCAGTCAAGCAGTCACAAAGAGGAGCAAGGTTCGGGCAGCAA
CTTGTCCTTCCGGCACATTTTCCGCTGTAGCACAAAACCATCAAGTATGG
GAGAGGGCCCAACACATGACTTTTTTGGCTAATGTTTGTCCTTTCTAAGT
TTATGGTCACTGATTGACATCTATGTTTCCATTTATGGGTACACGTTCAT
TCCACTAAGAGATTGAGAAAAACATAGGGTTTCGCTGTATAAATGGATTG
ATCCTGAAAATTCTCTTTCTCCAGGCCCCAGGGTGCTCGAAGCCAAACCA
TCATAGCTAACCAAGATTGTCATTCATCAGCCTCCCTAGCCCGCTTATTT
ACACAATAACGTACCTGCTGACATTCTCCTTGAAGTCTCTGGAACACCTG
TGCTTGGCATGGATGGTTGGAGTATGAGGGGTACCGGGCAGGGCGATGGG
GACAAGGGGTTTTCGAGCATTTGCACTCCACTCAACAGTTCCAAGCACAA
TTAAAAAAGTACCTGGATTATGGCACTAGGATCAGAGAGCTCTAAATTGC
TGCCGGCATCCATGACTTTCCGTTCCTGTGAAATTTTGTATGGCGTGTGG
CATGGAGGGAGAAGAGACGTGGACCGTGAAATATGCAATATATACATCTT
ATCGTCTATCCCCTTCTTCGCCTTTCAGAAGCTTTGTTGGAAAAAAACTC
TACAGGTTTCCAGCACCCCCATGCAGCCAATTTGCACGTCGCAGCACCTG
AGTTGGTTCTGAGCATCTCGACTTAGACGCAAAATAAAATATCACTCTGA
CTCTCAGAACGAAAGGAAGCTAGCCTCACCAAGCGGCAGGTCGTCGCTTG
AAGCGGGGCCAGGCGAGCGGGGCGCAATAATTCTGACTCGAAATTACGAA
GTATGCTCTTCCTTATACCACCTTCGCACTCACCCCTGTGTGCACCTACA
TAACCATCCGTAGATTTCGTTGCCATAGCGCCCATACCGCCTCGCGGGCC
CGCCTGCGAGGCAATTACGCTTCACGTCATCATCACTTTGGCAACAAGCT
TCCAGATTCCACCACACACAGTAACATGGGGCTAATGCACTCCAGTCACA
ACAAGCGGGCACACGTGATCAAGGAATTGGAGAGGTAAGTCCTCAGGGAG
CAAGCTTGAGCTCGGGGAGGGAGGGGGAAGAAGGGGGAGGGAGGGCGAGG
TGCTTGTTCGGACCGTTCCTTCCCTTCTGTTGTGTCCTGTGGCGGATGGC
TTATGGTACACAGGGCATAACTGTAATCGTCTCCACGTTTGTGGCTATCG
CCTTTCCCTGTTCGATAAGACGTGGTTTACTAGCATAGGAAAGTCTGGCG
CCTCTTTGTGAGCGTCGTGGTCTTGTCCTCAATGCCAGCTCCTTGGAGCT
GGCTTTTCTTCCTTGTCTCGTCCACTCCTCGCAGTGAAATCAATTCTCCT
CCCTCCTCTAATTCTACACGTAGATTCACCAAACCTACTGGCCTGTATCC
GTCTTGCGCCTGGGAGGACAAGGTAGTGCGCAAGCTCATCCTTGACGGCA
AACTTGCTCCACGCTTCGCCGGTTTGGAAGACAAGCACAACGGCACTAAG
GAATGTCCCATTTGCTTCTTGCGCCACGTGGTACTCAACCGCACGAGCTG
CTGTCGTCACGGATTGTGTACTGAATGCTATTTGCAGGTACGGAAGCCAA
AGGGGACCTCTCCCTGTCCTTATTGCCAAAATTCCAAGCTCCAAATTCTC
TACGGGACGGACGACGAGGAAAAAATGGCAACTCAAGAGCTAGCCAACAT
TCGTCATTATGACGTTTTGACGGCCTCGCCTCAGTCGATCCCTGTTGCTA
TGTTTAGCAGCAGTAGATCGAAGGAGGAGGCTCAGGAGGCGTGGGCCGTT
GCGACGCAAACATCCTCTGGACCAGCCGCTCACGCTGTTGCTTCTCCTGT
TGCCCCGTGTGCGGCATCAGGCAGTGGTTATACGGCCAAGAACAGTAGAG
TTGAAAGTGAGAGTCACATCAATTCCTCCCGCACCACTGCCGGCAGTCTA
AGAGGCAGTAGCAGCAGCAAGAATAGCTACATGGGCGTCATTCCATATGC
GACCGTCAAGCAGCGGAGTCAGATTGAAGAGGAAATGCGGAAGCAGCACC
TCACCCCAACTTTAGGAGAAGAACTAGGAGAGAATACGACGGCAGCAGCA
GCGGCAGCAACAGCATTGCTCTTTTCTTTTCGAGGCGCAGACTGCCAGGG
CGGTGGCGGCGCAGGTGCCGGTGGAGAAAGAGTAGGGCGTGGAGGAGGAG
AAGAGGTGGAGCGACGGGCGGCGCAAGCGCAATCGTACCCGCGAGCGCAC
GAGGATTTTGTGATGCGCCGGGCCTTGCTGGAGTCCTTTGGAGTGCCGGC
TCATTTGCAGCACGTGGAGGACTTGATGTTGATGGAGGCGATACAACGGT
CGTTGGAAGAGACGGGAGATGGTGCTGGTGGAGGAGGAGGAGGAGGAGAA
GGAGGAGGAGAAGGAGGAGGAGGAAGGGAAGGAGCAGGAGGGAGGGGGGG
AGGGAAGGAGGAAGTTGAAAGGGGATTGGGTGGTTAATAAGCCGTGGTAG
GTGTGTAAGCTGGAGGAGGCTAAGTTGAGAGGCGGAGAGATGGGGGTGGT
GGGCGGTAATGTTGTGTAAAGGAGTGTAAATATGTAGACGTATTGGACAG
GACGGGAAGTTGAGGCGGTGAAGAAAAGATAGGAGGGGTGGAGGAGGAGG
CGGTGGTGCAGCAGCACACCACAACAACCACCACCACCACCATTACCACC
TGCAGCAGTAACAGCGGCAGCAACAGTAGCATCAGCACGGAGAGATTTGA
GGATATCGGTAACGACATCACAGGTAAAAAAGATCTCGAGGCACGGATGA
AGGACGTCGTCTTATATGATGAGAGGTGAGAAGGTGGGGCCTGTTTCGTA
AATCTTTGTCTTACTTCCTCGAATAACATACATATATACAACCAAGGAAA
AGAAATCCCTCAAGATGACGACAAAGATAAGGAGGAGGGGGGAGAGTCTG
AGAGGGAGGAGAAGAAGAAGCGAGTGTAAGGGAAAGGCTCCATGGTCCGA
TATGCGAGTAAATTTCTGAGATTTGTGTAGGTGTTCATTTGTTAAAAACG
AGAGAGATGAAAGAAAGAAGGAAAATAAAAAGGGTAAGATGTAATGGAAA
GATATCACAGACAGGAATGCATAGAAAAAGAGAACCAGTCAATCATACAA
TCAATCAAACACGTACATTCAAAGCGAGATAAACATGAAGCCCTGGAGCG
ACTTGCCTGATTATAGCGCTCACATTCAGGAAAAGGCAGCAGTCGGGCCG
AGAGCTACATAAAGAAGTAAATCAACGAAGCAAGGAAAA back to topCoding sequence (CDS) from alignment at chr2:937489..941327+ >NO02G03510.1 ID=NO02G03510.1|Name=NO02G03510.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr2:937489..941327+ (Nannochloropsis oceanica) ATGGGGCTAATGCACTCCAGTCACAACAAGCGGGCACACGTGATCAAGGA ATTGGAGAGATTCACCAAACCTACTGGCCTGTATCCGTCTTGCGCCTGGG AGGACAAGGTAGTGCGCAAGCTCATCCTTGACGGCAAACTTGCTCCACGC TTCGCCGGTTTGGAAGACAAGCACAACGGCACTAAGGAATGTCCCATTTG CTTCTTGCGCCACGTGGTACTCAACCGCACGAGCTGCTGTCGTCACGGAT TGTGTACTGAATGCTATTTGCAGGTACGGAAGCCAAAGGGGACCTCTCCC TGTCCTTATTGCCAAAATTCCAAGCTCCAAATTCTCTACGGGACGGACGA CGAGGAAAAAATGGCAACTCAAGAGCTAGCCAACATTCGTCATTATGACG TTTTGACGGCCTCGCCTCAGTCGATCCCTGTTGCTATGTTTAGCAGCAGT AGATCGAAGGAGGAGGCTCAGGAGGCGTGGGCCGTTGCGACGCAAACATC CTCTGGACCAGCCGCTCACGCTGTTGCTTCTCCTGTTGCCCCGTGTGCGG CATCAGGCAGTGGTTATACGGCCAAGAACAGTAGAGTTGAAAGTGAGAGT CACATCAATTCCTCCCGCACCACTGCCGGCAGTCTAAGAGGCAGTAGCAG CAGCAAGAATAGCTACATGGGCGTCATTCCATATGCGACCGTCAAGCAGC GGAGTCAGATTGAAGAGGAAATGCGGAAGCAGCACCTCACCCCAACTTTA GGAGAAGAACTAGGAGAGAATACGACGGCAGCAGCAGCGGCAGCAACAGC ATTGCTCTTTTCTTTTCGAGGCGCAGACTGCCAGGGCGGTGGCGGCGCAG GTGCCGGTGGAGAAAGAGTAGGGCGTGGAGGAGGAGAAGAGGTGGAGCGA CGGGCGGCGCAAGCGCAATCGTACCCGCGAGCGCACGAGGATTTTGTGAT GCGCCGGGCCTTGCTGGAGTCCTTTGGAGTGCCGGCTCATTTGCAGCACG TGGAGGACTTGATGTTGATGGAGGCGATACAACGGTCGTTGGAAGAGACG GGAGATGGTGCTGGTGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGG AGGAGGAGGAAGGGAAGGAGCAGGAGGGAGGGGGGGAGGGAAGGAGGAAG TTGAAAGGGGATTGGGTGGTTAA back to top
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