NO02G03450.1, NO02G03450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03450.1
Unique NameNO02G03450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr2:924975..927087 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:924975..927087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03450.1 vs.
Match: XP_004334166.1 (EF hand domain containing protein [Acanthamoeba castellanii str. Neff]; ELR12153.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 292.0 bits (746), Expect = 4.300e-75
Identity = 178/495 (35.96%), Postives = 277/495 (55.96%), Query Frame = 0 
Query:   96 SPERKAPVMRKLSFLATTGV--------VENPFMNNTWEIYRLERLKCAVFGPVLIPPRLLLLIVSLLGAYGFGKLSTIGAEL----ERPMPRWRINLQHPMKFFARGIMFALGYHWISIKGKQASPQHAPIVVSNHCSFCEAIYLPGRLLSMAVSRRENAAIPFFGGLMQQVQCIFVSRTDKDSRTTVADEILRR-SKVERGLWHRQLLVFPEGTTTNGSAVISFKVGSFAGGVSVQPVAVSYPSNKICDPSWVSGGPHPGEILFKLLCQPWNCMNVTFLPVYNPDAAEIADPLLFSTNVRRLIAAELGVPASDHSFDDVLLLMEAKKLGYQ-GGLRDCISELKNMRKILEIDLAKAKEYLHDFSQLDTYRKGLLSYPQFIKAFGSKDSDALRSLFCVLDVQDRGVINLVEYTTGLALLNEQGTDGFDGAMRLIFKIQDSSGEGRLSKEDTAKVLRRLWPDVTTELLDSTFAAADTDKDGTLSADEFLALARSN 577
            S E K+ + R LSF     V        V NPF+N +  I   E  K  V   +L P RL+L+++ L+ A    K++ +G  +    ++P  RWR N+   +++ AR ++F  G+++I +KGKQA    API+VSNH S  + ++     L   +SR+EN  +PF G ++  +Q I V R D DSR    + I    +K E   W R LLVFPEGT TN  A+ISFK G+F  G  VQPVA+ +P     DP WV+G   P  ++++ LCQ  N + VT+LPV+ P   E A+P LF+ NVR  IA  L +P ++H FDDV   MEA KL  +  G  +   +LK++R+   +      + L  FS+ D  R G +++ +F +A G  +SD ++ LF +LD  D G I+  +Y +G+ALL+E+  D  D A++  FK+ D + +GR+ +++   +L  +   ++ + ++  F   D+++DG +  DEF    R N
Sbjct:    9 STEPKSKMTRNLSFSGQFRVNASRVPAPVVNPFINESIAITGYEWFKLVVGSVLLAPIRLVLILLLLVLAVLLVKIALLGLSVRDIHDKPFTRWRKNVLLLVRYMARALLFVWGFYYIPVKGKQADFDEAPILVSNHVSMFDVLFFYYYELPRFISRKENIHMPFVGTVLCAMQGILVDRKDPDSRKKAVEAINEHANKSESEGWPR-LLVFPEGTCTNQKALISFKSGAFNPGKPVQPVAIRHPFIHF-DPCWVNGINLP-LLMWRSLCQFSNYLQVTYLPVHKPSKYEKANPQLFANNVRAQIARALNIPTTEHGFDDVSFAMEAMKLQERPEGFGEV--DLKHLREYTRMSQEDLNKLLKKFSKFDNDRSGDITFHEFREALGLPNSDYVKRLFRLLDTDDSGSISWKKYISGIALLSEEVRD--DEAIKFAFKLFDQNDDGRIEQDELFAILSNVITTISPDEVEQIFTRVDSNQDGFIDCDEFTGFLREN 496
The following BLAST results are available for this feature:
BLAST of NO02G03450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004334166.14.300e-7535.96EF hand domain containing protein [Acanthamoeba ca... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03450NO02G03450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03450.1NO02G03450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03450.1.cds1NO02G03450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03450.1.cds2NO02G03450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03450.1.cds3NO02G03450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03450.1 ID=NO02G03450.1|Name=NO02G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
ATGGCAACGACCATCATATTTAGCTCAATGCCCCCCCTGCTGGCCTATTA
TACGTGCGCCGCAGTCACTATCTACGTAGTGCTCGGCCGCTTTTCCAGTC
CAAACCCGCGCTTGAGATGGCTGAAGCTGAAAGACCTGGAGAAAATTGAG
ACCGAAAAGAATGCCGCGCACTTGCCCGAGTCTGATCTTGTGTCCCTTCT
GTCTGGAAATCTATCGTCCTCCAAGCCCAATGTCGTTGCAGGGATGCTGC
AGTCTTCCTTGGCATCGTCGTCCTCCCCCTCGACATCCCCAGAGCGCAAA
GCTCCTGTGATGCGGAAGCTTTCCTTTCTCGCCACGACTGGAGTCGTCGA
AAATCCCTTCATGAACAATACTTGGGAGATCTATAGGCTGGAGCGCCTTA
AATGTGCGGTCTTCGGTCCAGTGCTCATCCCTCCCCGTCTGCTCCTGCTC
ATCGTGTCACTTCTTGGAGCCTATGGGTTCGGGAAGCTCTCTACCATTGG
CGCAGAACTAGAGCGCCCCATGCCTAGATGGCGCATTAACCTGCAGCATC
CCATGAAGTTCTTTGCGCGCGGGATTATGTTTGCATTGGGCTACCATTGG
ATCTCCATCAAAGGAAAGCAAGCAAGCCCACAACACGCTCCTATCGTTGT
CTCCAACCATTGCTCCTTCTGTGAAGCCATCTATCTACCCGGCCGCCTCT
TGTCCATGGCTGTTTCCCGCCGGGAAAACGCTGCTATCCCTTTTTTTGGA
GGACTGATGCAGCAAGTCCAATGTATTTTTGTCTCGCGCACCGATAAAGA
CTCCCGGACCACTGTCGCCGACGAGATCTTGAGACGCTCCAAAGTAGAAA
GGGGGCTGTGGCACCGTCAACTCCTCGTCTTCCCAGAAGGGACCACCACG
AACGGTAGTGCCGTCATCAGCTTCAAAGTCGGCTCTTTCGCCGGTGGGGT
AAGCGTGCAACCAGTCGCTGTATCCTACCCCTCCAACAAGATCTGCGATC
CATCATGGGTCAGTGGTGGGCCGCATCCCGGCGAGATTCTGTTTAAATTG
CTGTGTCAGCCATGGAACTGTATGAATGTTACTTTCCTGCCTGTTTATAA
TCCCGACGCCGCTGAAATTGCTGACCCCCTGCTGTTTAGCACAAATGTCA
GGCGGCTGATAGCCGCAGAGTTGGGCGTGCCTGCTAGTGATCACTCATTC
GATGACGTTTTGCTGTTAATGGAGGCGAAGAAGCTAGGGTACCAGGGGGG
TCTTCGTGATTGCATCTCTGAGCTGAAGAATATGCGAAAGATCCTAGAAA
TCGACCTGGCCAAAGCAAAAGAATACTTGCATGATTTCTCTCAGCTTGAC
ACATACAGGAAGGGGCTGTTGTCATACCCTCAATTCATCAAAGCTTTCGG
CTCCAAGGATTCAGACGCACTGAGGAGTCTATTTTGTGTATTAGACGTGC
AAGATCGGGGAGTGATCAATTTGGTGGAGTACACCACAGGTTTAGCACTG
TTGAACGAGCAAGGCACCGACGGTTTTGATGGAGCCATGCGCTTGATTTT
TAAAATTCAAGATTCGAGCGGGGAGGGGCGGCTCTCGAAGGAAGACACTG
CAAAGGTACTACGGCGGCTGTGGCCTGACGTGACAACGGAGCTTTTAGAC
TCGACGTTTGCTGCGGCGGACACAGACAAGGATGGGACGTTGAGCGCTGA
CGAGTTTCTGGCGTTGGCGAGGTCAAATCAACACCTGTGGCCGTCGCTTA
AGAGCTCGTTATGCGGGAAGCTTTGA
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protein sequence of NO02G03450.1

>NO02G03450.1-protein ID=NO02G03450.1-protein|Name=NO02G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MATTIIFSSMPPLLAYYTCAAVTIYVVLGRFSSPNPRLRWLKLKDLEKIE
TEKNAAHLPESDLVSLLSGNLSSSKPNVVAGMLQSSLASSSSPSTSPERK
APVMRKLSFLATTGVVENPFMNNTWEIYRLERLKCAVFGPVLIPPRLLLL
IVSLLGAYGFGKLSTIGAELERPMPRWRINLQHPMKFFARGIMFALGYHW
ISIKGKQASPQHAPIVVSNHCSFCEAIYLPGRLLSMAVSRRENAAIPFFG
GLMQQVQCIFVSRTDKDSRTTVADEILRRSKVERGLWHRQLLVFPEGTTT
NGSAVISFKVGSFAGGVSVQPVAVSYPSNKICDPSWVSGGPHPGEILFKL
LCQPWNCMNVTFLPVYNPDAAEIADPLLFSTNVRRLIAAELGVPASDHSF
DDVLLLMEAKKLGYQGGLRDCISELKNMRKILEIDLAKAKEYLHDFSQLD
TYRKGLLSYPQFIKAFGSKDSDALRSLFCVLDVQDRGVINLVEYTTGLAL
LNEQGTDGFDGAMRLIFKIQDSSGEGRLSKEDTAKVLRRLWPDVTTELLD
STFAAADTDKDGTLSADEFLALARSNQHLWPSLKSSLCGKL*
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mRNA from alignment at chr2:924975..927087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03450.1 ID=NO02G03450.1|Name=NO02G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp|location=Sequence derived from alignment at chr2:924975..927087- (Nannochloropsis oceanica)
ATGGCAACGACCATCATATTTAGCTCAATGCCCCCCCTGCTGGCCTATTA
TACGTGCGCCGCAGTCACTATCTACGTAGTGCTCGGCCGCTTTTCCAGTC
CAAACCCGCGCTTGAGATGGCTGAAGCTGAAAGACCTGGAGAAAATTGAG
ACCGAAAAGAATGCCGCGCACTTGCCCGAGTCTGATCTTGTGTCCCTTCT
GTCTGGAAATCTATCGTCCTCCAAGCCCAATGTCGTTGCAGGGATGCTGC
AGTCTTCCTTGGCATCGTCGTCCTCCCCCTCGACATCCCCAGAGCGCAAA
GCTCCTGTGATGCGGAAGCTTTCCTTTCTCGCCACGACTGGAGTCGTCGA
AAATCCCTTCATGAACAATACTTGGGAGATCTATAGGCTGGAGCGCCTTA
AATGTGCGGTCTTCGGTCCAGTGCTCATCCCTCCCCGTCTGCTCCTGCTC
ATCGTGTCACTTCTTGGAGCCTATGGGTTCGGGAAGCTCTCTACCATTGG
CGCAGAACTAGAGCGCCCCATGCCTAGATGGCGCATTAACCTGCAGCATC
CCATGAAGTTCTTTGCGCGCGGGATTATGTTTGCATTGGGCTACCATTGG
ATCTCCATCAAAGGAAAGCAAGCAAGCCCACAACACGCTCCTATCGTTGT
CTCCAACCATTGCTCCTTCTGTGAAGCCATCTATCTACCCGGCCGCCTCT
TGTCCATGGCTGTTTCCCGCCGGGAAAACGCTGCTATCCCTTTTTTTGGA
GGACTGATGCAGCAAGGCAAGTAGTAACATTTAGGGATGGATTGATTGTG
GCACGAGAAGCAGAGAGCAGAGCCGACCCCGAGCGAATTCACCTCATATT
TGCTTTTAACTTGGCATTTTCTCTCCCCCATCCCGTTTCCCTCTTCCCCC
TCCGCCCCACAGTCCAATGTATTTTTGTCTCGCGCACCGATAAAGACTCC
CGGACCACTGTCGCCGACGAGATCTTGAGACGCTCCAAAGTAGAAAGGGG
GCTGTGGCACCGTCAACTCCTCGTCTTCCCAGAAGGGACCACCACGAACG
GTAGTGCCGTCATCAGCTTCAAAGTCGGCTCTTTCGCCGGTGGGGTAAGC
GTGCAACCAGTCGCTGTATCCTACCCCTCCAACAAGATCTGCGATCCATC
ATGGGTCAGTGGTGGGCCGCATCCCGGCGAGATTCTGTTTAAATTGCTGT
GTCAGCCATGGAACTGTATGAATGTTACTTTCCTGCCTGTTTATAATCCC
GACGCCGCTGAAATTGCTGACCCCCTGCTGTTTAGCACAAATGTCAGGCG
GCTGATAGCCGCAGAGTTGGGCGTGCCTGCTAGTGATCACTCATTCGATG
ACGTTTTGCTGTTAATGGAGGCGAAGAAGCTAGGGTACCAGGGGGGTCTT
CGTGATTGCATCTCTGAGCTGAAGAATATGCGAAAGATCCTAGAAATCGA
CCTGGCCAAAGCAAAAGAATACTTGCATGATTTCTCTCAGCTTGACACAT
ACAGGAAGGGGCTGTTGTCATACCCTCAATTCATCAAAGCTTTCGGCTCC
AAGGATTCAGACGCACTGAGGAGTCTATTTTGTGTATTAGACGTGCAAGA
TCGGGGAGTGATCAATTTGGTGGAGTACACCACAGGTTTAGCACTGGTAT
GTATTCCTCCCATCTCTCACTCCTTTCTCGATGTCCTTCTCGATAACTTC
TCTTCCCTTCTTTTCACCCTCTCTTCGCAAAATTTCTCCCTCTCTCCAAT
TTAAAACTTACTTCCAGCTTCATCCATCTAACAATCCCTCCCTCCCTTCC
TTCCCTTTTTCCTTACCCTTTTCCCTTACCTTTTCAGTTGAACGAGCAAG
GCACCGACGGTTTTGATGGAGCCATGCGCTTGATTTTTAAAATTCAAGAT
TCGAGCGGGGAGGGGCGGCTCTCGAAGGAAGACACTGCAAAGGTACTACG
GCGGCTGTGGCCTGACGTGACAACGGAGCTTTTAGACTCGACGTTTGCTG
CGGCGGACACAGACAAGGATGGGACGTTGAGCGCTGACGAGTTTCTGGCG
TTGGCGAGGTCAAATCAACACCTGTGGCCGTCGCTTAAGAGCTCGTTATG
CGGGAAGCTTTGA
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Coding sequence (CDS) from alignment at chr2:924975..927087-

>NO02G03450.1 ID=NO02G03450.1|Name=NO02G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr2:924975..927087- (Nannochloropsis oceanica)
ATGGCAACGACCATCATATTTAGCTCAATGCCCCCCCTGCTGGCCTATTA
TACGTGCGCCGCAGTCACTATCTACGTAGTGCTCGGCCGCTTTTCCAGTC
CAAACCCGCGCTTGAGATGGCTGAAGCTGAAAGACCTGGAGAAAATTGAG
ACCGAAAAGAATGCCGCGCACTTGCCCGAGTCTGATCTTGTGTCCCTTCT
GTCTGGAAATCTATCGTCCTCCAAGCCCAATGTCGTTGCAGGGATGCTGC
AGTCTTCCTTGGCATCGTCGTCCTCCCCCTCGACATCCCCAGAGCGCAAA
GCTCCTGTGATGCGGAAGCTTTCCTTTCTCGCCACGACTGGAGTCGTCGA
AAATCCCTTCATGAACAATACTTGGGAGATCTATAGGCTGGAGCGCCTTA
AATGTGCGGTCTTCGGTCCAGTGCTCATCCCTCCCCGTCTGCTCCTGCTC
ATCGTGTCACTTCTTGGAGCCTATGGGTTCGGGAAGCTCTCTACCATTGG
CGCAGAACTAGAGCGCCCCATGCCTAGATGGCGCATTAACCTGCAGCATC
CCATGAAGTTCTTTGCGCGCGGGATTATGTTTGCATTGGGCTACCATTGG
ATCTCCATCAAAGGAAAGCAAGCAAGCCCACAACACGCTCCTATCGTTGT
CTCCAACCATTGCTCCTTCTGTGAAGCCATCTATCTACCCGGCCGCCTCT
TGTCCATGGCTGTTTCCCGCCGGGAAAACGCTGCTATCCCTTTTTTTGGA
GGACTGATGCAGCAAGTCCAATGTATTTTTGTCTCGCGCACCGATAAAGA
CTCCCGGACCACTGTCGCCGACGAGATCTTGAGACGCTCCAAAGTAGAAA
GGGGGCTGTGGCACCGTCAACTCCTCGTCTTCCCAGAAGGGACCACCACG
AACGGTAGTGCCGTCATCAGCTTCAAAGTCGGCTCTTTCGCCGGTGGGGT
AAGCGTGCAACCAGTCGCTGTATCCTACCCCTCCAACAAGATCTGCGATC
CATCATGGGTCAGTGGTGGGCCGCATCCCGGCGAGATTCTGTTTAAATTG
CTGTGTCAGCCATGGAACTGTATGAATGTTACTTTCCTGCCTGTTTATAA
TCCCGACGCCGCTGAAATTGCTGACCCCCTGCTGTTTAGCACAAATGTCA
GGCGGCTGATAGCCGCAGAGTTGGGCGTGCCTGCTAGTGATCACTCATTC
GATGACGTTTTGCTGTTAATGGAGGCGAAGAAGCTAGGGTACCAGGGGGG
TCTTCGTGATTGCATCTCTGAGCTGAAGAATATGCGAAAGATCCTAGAAA
TCGACCTGGCCAAAGCAAAAGAATACTTGCATGATTTCTCTCAGCTTGAC
ACATACAGGAAGGGGCTGTTGTCATACCCTCAATTCATCAAAGCTTTCGG
CTCCAAGGATTCAGACGCACTGAGGAGTCTATTTTGTGTATTAGACGTGC
AAGATCGGGGAGTGATCAATTTGGTGGAGTACACCACAGGTTTAGCACTG
TTGAACGAGCAAGGCACCGACGGTTTTGATGGAGCCATGCGCTTGATTTT
TAAAATTCAAGATTCGAGCGGGGAGGGGCGGCTCTCGAAGGAAGACACTG
CAAAGGTACTACGGCGGCTGTGGCCTGACGTGACAACGGAGCTTTTAGAC
TCGACGTTTGCTGCGGCGGACACAGACAAGGATGGGACGTTGAGCGCTGA
CGAGTTTCTGGCGTTGGCGAGGTCAAATCAACACCTGTGGCCGTCGCTTA
AGAGCTCGTTATGCGGGAAGCTTTGA
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Synonyms
Publications