NO02G03360.1, NO02G03360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03360.1
Unique NameNO02G03360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length342
Alignment locationchr2:902981..903865 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:902981..903865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03360.1 vs.
Match: EWM30254.1 (hypothetical protein Naga_100003g148 [Nannochloropsis gaditana])

HSP 1 Score: 78.2 bits (191), Expect = 1.900e-11
Identity = 54/96 (56.25%), Postives = 60/96 (62.50%), Query Frame = 0 
Query:    1 MVSGGHCLAFALRLPHGASILARSQGVVMGIERRSPFGGRRMLSTE-ESTQAAAHAPSKGSSLLQRLSSFLAGVGVTSLVGYYFLVQDVKRSTESV 96
            M  G  CL  A R  H  S    + G      R SP G  R LSTE EST   ++   KGSS  QRLSSFLAGVGVTSLVGY+FL+QDVKRST+SV
Sbjct:   57 MAHGSRCLTSAFR--HFRSPYEMTVGA-----RWSPGGCHRKLSTEAESTSLTSN---KGSSFFQRLSSFLAGVGVTSLVGYFFLIQDVKRSTDSV 142
The following BLAST results are available for this feature:
BLAST of NO02G03360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30254.11.900e-1156.25hypothetical protein Naga_100003g148 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03360NO02G03360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03360.1NO02G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03360.1.cds1NO02G03360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03360.1.cds2NO02G03360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03360.1.cds3NO02G03360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03360.1 ID=NO02G03360.1|Name=NO02G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=342bp
ATGGTTTCTGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCCACACGG
TGCCAGCATCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAGAACGCC
GGTCACCTTTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGTACTCAA
GCAGCCGCTCATGCACCGTCCAAAGGTTCTTCGCTCCTTCAGCGGTTATC
CTCCTTCCTGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACTATTTTC
TCGTCCAGGATGTGAAGCGGTCGACCGAGTCGGTACAAGCGGGCATGAGC
GACATCACAAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAA
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protein sequence of NO02G03360.1

>NO02G03360.1-protein ID=NO02G03360.1-protein|Name=NO02G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MVSGGHCLAFALRLPHGASILARSQGVVMGIERRSPFGGRRMLSTEESTQ
AAAHAPSKGSSLLQRLSSFLAGVGVTSLVGYYFLVQDVKRSTESVQAGMS
DITKRLEALEKSK*
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mRNA from alignment at chr2:902981..903865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03360.1 ID=NO02G03360.1|Name=NO02G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp|location=Sequence derived from alignment at chr2:902981..903865+ (Nannochloropsis oceanica)
ATGGTTTCTGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCCACACGG
TGCCAGCATCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAGAACGCC
GGTCACCTTTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGTACTCAA
GCAGCCGCTCATGCACCGTCCAAAGGTACATGAGAATGATACGAAGGAAA
GGGGAAAGTGGAGGGGGCGGGGGGGAAGAGTGCAGGCTGGCCTTTGTGCG
CGATGAAGAGGAGGGACAGAACGCAGGCCAGGGTCTTGATGTTGCCAGGC
ATGGAACCTGACGAATCAAAAAAGTGCCATCTTACCCTGCCCTCCGAAAC
ATTTGGCATTTCAAACAGGTTCTTCGCTCCTTCAGCGGTTATCCTCCTTC
CTGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACTATTTTCTCGTCCA
GGATGTGAAGCGGTACGTGTTGGGAACGGACGAAGCTCAGCTCTGCTAGT
GTCTGGTATTTGATATCATCCGAAAATATTGGTGACACTCGGTTTACCAA
CTACATCTCCTTGCTGGTGGCCACCTCATGCCTCGCTCCTACATCGGCTG
CTCGGAGATGCAAGGGGAAAGAACATCTGGCCGAGAGGGCTCTCTTTTGG
GATCAGGACCTTTTATTTATTATTCAATTTCTGGTTTTCGAACGGGGTAC
TTTTTTATGCGCTCCCTTTTGTCGTACCTACTTATCAAATTGAAACTGTT
CTCCCATTCTGACCTAATCGGCTCCTTTCCATTCTTATCTTCCTGCACCA
CGTCAAATACAGGTCGACCGAGTCGGTACAAGCGGGCATGAGCGACATCA
CAAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAA
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Coding sequence (CDS) from alignment at chr2:902981..903865+

>NO02G03360.1 ID=NO02G03360.1|Name=NO02G03360.1|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at chr2:902981..903865+ (Nannochloropsis oceanica)
ATGGTTTCTGGGGGGCACTGTCTGGCGTTTGCCTTGCGTCTTCCACACGG
TGCCAGCATCTTGGCTCGATCTCAAGGGGTGGTGATGGGGATAGAACGCC
GGTCACCTTTTGGAGGCCGCCGCATGTTGTCTACGGAGGAAAGTACTCAA
GCAGCCGCTCATGCACCGTCCAAAGGTTCTTCGCTCCTTCAGCGGTTATC
CTCCTTCCTGGCTGGCGTGGGCGTGACGTCCTTGGTGGGCTACTATTTTC
TCGTCCAGGATGTGAAGCGGTCGACCGAGTCGGTACAAGCGGGCATGAGC
GACATCACAAAGAGACTGGAGGCGCTGGAGAAGAGCAAATAA
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Synonyms
Publications