NO02G03330.1, NO02G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03330.1
Unique NameNO02G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length825
Alignment locationchr2:895208..896200 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:895208..896200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03330.1 vs.
Match: EWM30212.1 (inosine triphosphate pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 1.200e-75
Identity = 138/175 (78.86%), Postives = 155/175 (88.57%), Query Frame = 0 
Query:   73 RAVIKFITSNPLKTREVQALLAEGGLRVPFDIQTLDIQLPELQESPLVIAIEKTRLASNRVKAPCLVEDTSLCLNALGGLPGPYIKHFLDELGSAGLFKMVEAYEDRSARAICNVGFSPGPGQQPVIFTGITYGEIVLPEEDDNGFGWDTCFRPSGFTTTFSKMTVNEKNAISHR 248
            R  +KF+TSNPLKTREVQALLAEGGL+VPFDI TLDI+LPELQE+PLVIAIEKTRLA+  V+ P LVEDT LC +ALG LPGPYIKHFLD+LG  GLF+M+E YED SA+A+CNVGFSPGPG QP+IFTGITYGEIV PEE D+GFGWDTCF PSGF +TFSKMTV +KNAISHR
Sbjct:   86 RLEVKFLTSNPLKTREVQALLAEGGLQVPFDIVTLDIELPELQETPLVIAIEKTRLAAQAVQGPVLVEDTCLCFDALGDLPGPYIKHFLDQLGPEGLFRMIENYEDHSAKAVCNVGFSPGPGCQPLIFTGITYGEIVRPEEGDDGFGWDTCFAPSGFNSTFSKMTVEQKNAISHR 260
The following BLAST results are available for this feature:
BLAST of NO02G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30212.11.200e-7578.86inosine triphosphate pyrophosphatase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03330NO02G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03330.1NO02G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03330.1.cds1NO02G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03330.1.cds2NO02G03330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03330.1.cds3NO02G03330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03330.1 ID=NO02G03330.1|Name=NO02G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
ATGGGGGGGGCGCAAGGCATCCCACGGGCGTTGGCACCAGTGGTGCTGCT
TTCATTCTGCGTAATTGCACCTTCTTGGGCATTTGTTCGACCCGTTCCCG
CCAGATGCACACTTTCTTCCTCTCTTTCCGGCCACACCATAATCGCAAGT
GCCACCCACGTTCCTGGAAGCACACTGGCATGCTCAACGCCTACGGCAGC
CAGCTACAGTCAAAAAAGGGCAGTTATAAAATTCATTACGAGCAATCCTC
TTAAAACGCGTGAAGTGCAAGCCCTATTGGCGGAAGGAGGTCTTCGAGTG
CCCTTCGACATTCAGACTCTTGATATACAGCTGCCTGAGCTGCAAGAGTC
TCCGCTGGTGATTGCAATTGAAAAGACTCGGCTAGCCTCAAACAGAGTAA
AGGCGCCATGCCTTGTAGAGGACACCTCGTTGTGCCTCAACGCACTCGGC
GGGTTACCAGGACCATACATCAAGCACTTCTTGGATGAGTTGGGAAGCGC
GGGATTGTTTAAGATGGTGGAAGCTTACGAAGACCGCTCCGCCAGGGCCA
TCTGCAACGTCGGGTTTTCTCCCGGTCCAGGGCAGCAGCCCGTAATTTTT
ACTGGTATCACATACGGCGAAATTGTTCTCCCGGAAGAGGACGACAACGG
GTTTGGATGGGATACTTGCTTTCGTCCTTCTGGGTTCACCACCACTTTCT
CGAAGATGACGGTCAATGAGAAGAATGCCATTTCTCACCGCAGTTTGGCG
TTGCGCCAATTCCAACAATACATAGCAGATAATTGGGGCGAGGGAGGATT
TGATGAAAGGGGTGTATTCAAGTAG
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protein sequence of NO02G03330.1

>NO02G03330.1-protein ID=NO02G03330.1-protein|Name=NO02G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MGGAQGIPRALAPVVLLSFCVIAPSWAFVRPVPARCTLSSSLSGHTIIAS
ATHVPGSTLACSTPTAASYSQKRAVIKFITSNPLKTREVQALLAEGGLRV
PFDIQTLDIQLPELQESPLVIAIEKTRLASNRVKAPCLVEDTSLCLNALG
GLPGPYIKHFLDELGSAGLFKMVEAYEDRSARAICNVGFSPGPGQQPVIF
TGITYGEIVLPEEDDNGFGWDTCFRPSGFTTTFSKMTVNEKNAISHRSLA
LRQFQQYIADNWGEGGFDERGVFK*
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mRNA from alignment at chr2:895208..896200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03330.1 ID=NO02G03330.1|Name=NO02G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at chr2:895208..896200- (Nannochloropsis oceanica)
ATGGGGGGGGCGCAAGGCATCCCACGGGCGTTGGCACCAGTGGTGCTGCT
TTCATTCTGCGTAATTGCACCTTCTTGGGCATTTGTTCGACCCGTTCCCG
CCAGATGCACACTTTCTTCCTCTCTTTCCGGCCACACCATAATCGCAAGT
GCCACCCACGTTCCTGGAAGCACACTGGCATGCTCAACGCCTACGGCAGC
CAGCTACAGTCAAAAAAGGGCAGTTATAAAATTCATTACGAGCAATCCTC
TTAAAACGCGTGAAGTGCAAGCCCTATTGGCGGAAGGAGGTCTTCGAGTG
CCCTTCGACATTCAGACTCTTGATATACAGCTGCCTGAGCTGCAAGAGTC
TCCGCTGGTGATTGCAATTGAAAAGACTCGGCTAGCCTCAAACAGAGTAA
AGGTAAGCTTTTTCATTTCCTCGCCACCAACTCACTTCTGCTTCCTTCCA
GTAAGTCACTTCTTACCTGTCCCTTCCCTTTGACACGTACAGGCGCCATG
CCTTGTAGAGGACACCTCGTTGTGCCTCAACGCACTCGGCGGGTTACCAG
GACCATACATCAAGCACTTCTTGGATGAGTTGGGAAGCGCGGGATTGTTT
AAGGTATGCTTTTCAACATGTATTCGTGGAGGAGAGGTTGACCCACATCA
TCTACCTTCCCTCCTCCTGTACCTCCCCCAGATGGTGGAAGCTTACGAAG
ACCGCTCCGCCAGGGCCATCTGCAACGTCGGGTTTTCTCCCGGTCCAGGG
CAGCAGCCCGTAATTTTTACTGGTATCACATACGGCGAAATTGTTCTCCC
GGAAGAGGACGACAACGGGTTTGGATGGGATACTTGCTTTCGTCCTTCTG
GGTTCACCACCACTTTCTCGAAGATGACGGTCAATGAGAAGAATGCCATT
TCTCACCGCAGTTTGGCGTTGCGCCAATTCCAACAATACATAGCAGATAA
TTGGGGCGAGGGAGGATTTGATGAAAGGGGTGTATTCAAGTAG
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Coding sequence (CDS) from alignment at chr2:895208..896200-

>NO02G03330.1 ID=NO02G03330.1|Name=NO02G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at chr2:895208..896200- (Nannochloropsis oceanica)
ATGGGGGGGGCGCAAGGCATCCCACGGGCGTTGGCACCAGTGGTGCTGCT
TTCATTCTGCGTAATTGCACCTTCTTGGGCATTTGTTCGACCCGTTCCCG
CCAGATGCACACTTTCTTCCTCTCTTTCCGGCCACACCATAATCGCAAGT
GCCACCCACGTTCCTGGAAGCACACTGGCATGCTCAACGCCTACGGCAGC
CAGCTACAGTCAAAAAAGGGCAGTTATAAAATTCATTACGAGCAATCCTC
TTAAAACGCGTGAAGTGCAAGCCCTATTGGCGGAAGGAGGTCTTCGAGTG
CCCTTCGACATTCAGACTCTTGATATACAGCTGCCTGAGCTGCAAGAGTC
TCCGCTGGTGATTGCAATTGAAAAGACTCGGCTAGCCTCAAACAGAGTAA
AGGCGCCATGCCTTGTAGAGGACACCTCGTTGTGCCTCAACGCACTCGGC
GGGTTACCAGGACCATACATCAAGCACTTCTTGGATGAGTTGGGAAGCGC
GGGATTGTTTAAGATGGTGGAAGCTTACGAAGACCGCTCCGCCAGGGCCA
TCTGCAACGTCGGGTTTTCTCCCGGTCCAGGGCAGCAGCCCGTAATTTTT
ACTGGTATCACATACGGCGAAATTGTTCTCCCGGAAGAGGACGACAACGG
GTTTGGATGGGATACTTGCTTTCGTCCTTCTGGGTTCACCACCACTTTCT
CGAAGATGACGGTCAATGAGAAGAATGCCATTTCTCACCGCAGTTTGGCG
TTGCGCCAATTCCAACAATACATAGCAGATAATTGGGGCGAGGGAGGATT
TGATGAAAGGGGTGTATTCAAGTAG
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Synonyms
Publications