NO02G03300.1, NO02G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03300.1
Unique NameNO02G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2081
Alignment locationchr2:886268..888556 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:886268..888556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03300.1 vs.
Match: GAY02821.1 (phosphoribosyl-ATP diphosphatase [Pythium insidiosum])

HSP 1 Score: 285.0 bits (728), Expect = 3.300e-73
Identity = 186/370 (50.27%), Postives = 224/370 (60.54%), Query Frame = 0 
Query:    3 VNRVREELAPLPRDRVGAIVVVDAKEGARAYLAERVTQLCADASTIILQIEEGVVDGEESLVEMVKSVRQATKPSALFWGMMVKAPASMTWSATSISALHKMEIQALIPATTVAGNKISTTTTTNTGPTDLLNPLLPLGQS------LVDGVDAFLACLRTDRSDGLFTTVVVDESNMALGLVYSSGESVRASVAEQRGIYYSRSRSSLWRKGDSSGAVQELVSLDMDCDSDALRFVVRQRGDPPAFCHLNRRNCWQRDRGLTALQRTLEERLKKATEGSYTRRLFQDPELLRHKLVEEAQELSEAVEPDDVAAEAADVFYFALVRCVAAGVGLEDVERHLDARMLKLARRPGNAKAYRIEAAKAILANE 367
            + RV   ++ LP  RV   + V+    A    A+ VTQL        LQ  +  V G   L+    +    T   A  +  + KA  ++   A   SAL  +E  A+   T      +    T +     L+ P LP   +       VD  +AF+ CLR+DR DGLFTTVVVDES +ALGLVYSS ESV A++   RG+YYSRSR  LW+KG+SSG VQELV LD+DCDSDALRF+VRQ G    FCHLN R CW    GLT LQ  LE RL+ A  GSYT+RLF D ELLR+KLVEEAQEL+EA  P  VA EAADV YFA+VRCVAAG  L DVER LD R LK+ RRPGN+KAYRIEAA  IL  +
Sbjct:  110 LQRVAAAVSELPASRVVLRLPVEL---ATLESADAVTQLRGK-----LQRLQSTVGGVVLLLRRAPTALLTTDDEA--FARVSKALQTLR-DAVDESALFAVEWDAIHQETFDRSALVPRIATLHRESIQLMAPALPRASTADDRAQFVDAGEAFVKCLRSDRVDGLFTTVVVDESGVALGLVYSSEESVLAAIESGRGVYYSRSRKGLWKKGESSGNVQELVQLDVDCDSDALRFMVRQTG--AGFCHLNTRTCWGDAGGLTYLQAMLESRLQDAPAGSYTKRLFDDAELLRNKLVEEAQELAEAQTPTHVAEEAADVMYFAMVRCVAAGATLTDVERQLDMRSLKVKRRPGNSKAYRIEAANEILKKQ 466
The following BLAST results are available for this feature:
BLAST of NO02G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAY02821.13.300e-7350.27phosphoribosyl-ATP diphosphatase [Pythium insidios... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03300NO02G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03300.1NO02G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03300.1.cds1NO02G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03300.1.cds2NO02G03300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03300.1 ID=NO02G03300.1|Name=NO02G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2081bp
GCAAAAGCGATATGTCTTGACAATCGCATCACACCCGGAGATGTCCCAGC
CACCCTCGTGGTCCTGATATTTACAACCAACCAACCGCAGGGCCTGAAAA
ATGGACAGGTCAGTCCAAGACATCTGGATCCTGACAGTCGTATGCAGGCA
ACGTATGCATTACTCCCAGGCGTCTTGTCATTCAAGAACCTCCCCATCCA
GACCACACCACACCACCGCCCCCCATCCAGCAACACTACTCATGTCCTCC
GCTTGTCGCATCGTCTATCACTCGCCCTTGCACTCTGAACCACACAGATT
CGAGCCGTCTACGCGCCTAGGTAGCCATGCTGGTGCCCTGCCTTTCACTG
GACGGGGTGCTTGCCGATCCCGACCTGGCTAAGCGGTACGGCGTATTGGG
TACCCTCCTGCTTCAGCCATCCCAATCATCCGCTCTCCCGGCCGTGTAAG
TCAGCTAATCTTCCCCTCATGTATGCATCTTATTGCGACGGTCCGAATGT
GTCTTCAATAGCGGACGCGGCTTCCTTTCCAAGTACACAAGTTGCGATCT
CCCTTCCGCCCTCCCTTTCATGTCCCAACACAAACCATCACCTCAACTGA
GCCTCACACTCACACGAGTCATTTCTTTTTTCTTTTCTTTAACTTCACTC
ACGTATCAATCCATGCGTCGCCAATCCTTTTTTCCTTTTACTCCATTCTC
GGCCTCTGCTTTCCCATTGCGCTAACCCTCCCGACAGAATCCCTGTGGCG
TTGCTACACCATCACAGCCTTGCGCTAGGACCCCTGGCCCTCGCCCAAGT
TGAAGAAGTGCGGCCATGGCTACATAGCGGTATCCGCAAGGCCTTCTTCA
CCATACCCAAGGATATGCCAGTGAACAGGGTCAGAGAAGAACTTGCCCCC
CTCCCTCGCGATCGTGTGGGGGCCATCGTCGTCGTGGACGCCAAGGAGGG
TGCCAGAGCATACTTGGCGGAGCGCGTGACACAGTTGTGCGCGGATGCGT
CGACAATTATCTTGCAAATTGAAGAAGGTGTTGTAGATGGGGAGGAGTCA
CTTGTCGAAATGGTCAAGTCAGTGCGCCAGGCCACCAAGCCAAGTGCCTT
GTTTTGGGGGATGATGGTTAAAGCACCTGCATCCATGACATGGTCGGCAA
CAAGCATCAGCGCTCTACACAAAATGGAAATACAGGCACTTATTCCCGCT
ACCACTGTGGCCGGAAACAAGATCAGCACCACGACTACAACCAATACGGG
CCCCACCGATCTACTTAATCCGTTGCTTCCCTTGGGCCAGTCGTTGGTTG
ATGGCGTAGACGCCTTCTTGGCATGCCTACGCACCGATCGTTCCGATGGA
CTTTTTACTACAGTGGTGGTGGACGAAAGCAACATGGCACTGGGCTTGGT
GTATTCGAGCGGGGAAAGCGTGCGGGCGTCGGTAGCGGAGCAGCGTGGCA
TTTACTACTCCCGGTCTCGGTCCAGCCTTTGGCGGAAAGGAGACTCGAGT
GGAGCTGTGCAGGAGTTGGTCAGTCTGGATATGGACTGCGACTCTGACGC
TTTGCGCTTTGTTGTGCGGCAACGTGGCGACCCCCCGGCCTTTTGTCACT
TGAATCGACGCAATTGTTGGCAACGAGATCGAGGCCTTACCGCCTTGCAA
CGAACCTTGGAGGAACGCTTGAAGAAAGCGACCGAGGGTTCTTATACTCG
TAGACTCTTTCAGGATCCAGAGCTGCTGCGACACAAGCTGGTTGAAGAAG
CACAGGAGCTTAGTGAGGCTGTGGAACCTGACGACGTGGCGGCAGAGGCA
GCGGACGTGTTTTACTTTGCGTTGGTGCGGTGCGTGGCGGCGGGTGTTGG
TTTAGAGGACGTCGAGCGGCACCTTGACGCCCGGATGCTCAAGCTAGCGA
GACGACCAGGCAATGCTAAGGCCTACCGGATCGAGGCAGCTAAGGCTATT
TTGGCTAATGAAAGTCCGCCATCGGCCTCCCCGTCGTGATCTCGTGATCT
TGAGGCGGAGATGTCATCGATACATAGAGAACAGAGAGAGAGAGTAGAAC
ATCAACCTTAAAAGAGAAGAAATTATCCTTT
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protein sequence of NO02G03300.1

>NO02G03300.1-protein ID=NO02G03300.1-protein|Name=NO02G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MPVNRVREELAPLPRDRVGAIVVVDAKEGARAYLAERVTQLCADASTIIL
QIEEGVVDGEESLVEMVKSVRQATKPSALFWGMMVKAPASMTWSATSISA
LHKMEIQALIPATTVAGNKISTTTTTNTGPTDLLNPLLPLGQSLVDGVDA
FLACLRTDRSDGLFTTVVVDESNMALGLVYSSGESVRASVAEQRGIYYSR
SRSSLWRKGDSSGAVQELVSLDMDCDSDALRFVVRQRGDPPAFCHLNRRN
CWQRDRGLTALQRTLEERLKKATEGSYTRRLFQDPELLRHKLVEEAQELS
EAVEPDDVAAEAADVFYFALVRCVAAGVGLEDVERHLDARMLKLARRPGN
AKAYRIEAAKAILANESPPSASPS*
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mRNA from alignment at chr2:886268..888556+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03300.1 ID=NO02G03300.1|Name=NO02G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp|location=Sequence derived from alignment at chr2:886268..888556+ (Nannochloropsis oceanica)
GCAAAAGCGATATGTCTTGACAATCGCATCACACCCGGAGATGTCCCAGC
CACCCTCGTGGTCCTGATATTTACAACCAACCAACCGCAGGGCCTGAAAA
ATGGACAGGTCAGTCCAAGACATCTGGATCCTGACAGTCGTATGCAGGCA
ACGTATGCATTACTCCCAGGCGTCTTGTCATTCAAGAACCTCCCCATCCA
GACCACACCACACCACCGCCCCCCATCCAGCAACACTACTCATGTCCTCC
GCTTGTCGCATCGTCTATCACTCGCCCTTGCACTCTGAACCACACAGATT
CGAGCCGTCTACGCGCCTAGGTAGCCATGCTGGTGCCCTGCCTTTCACTG
GACGGGGTGCTTGCCGATCCCGACCTGGCTAAGCGGTACGGCGTATTGGG
TACCCTCCTGCTTCAGCCATCCCAATCATCCGCTCTCCCGGCCGTGTAAG
TCAGCTAATCTTCCCCTCATGTATGCATCTTATTGCGACGGTCCGAATGT
GTCTTCAATAGCGGACGCGGCTTCCTTTCCAAGTACACAAGTTGCGATCT
CCCTTCCGCCCTCCCTTTCATGTCCCAACACAAACCATCACCTCAACTGA
GCCTCACACTCACACGAGTCATTTCTTTTTTCTTTTCTTTAACTTCACTC
ACGTATCAATCCATGCGTCGCCAATCCTTTTTTCCTTTTACTCCATTCTC
GGCCTCTGCTTTCCCATTGCGCTAACCCTCCCGACAGAATCCCTGTGGCG
TTGCTACACCATCACAGCCTTGCGCTAGGACCCCTGGCCCTCGCCCAAGT
TGAAGAAGTGCGGCCATGGCTACATAGCGGTATCCGCAAGGCCTTCTTCA
CCATACCCAAGGATATGCCAGTGAACAGGGTCAGAGAAGAACTTGCCCCC
CTCCCTCGCGATCGTGTGGGGGCCATCGTCGTCGTGGACGCCAAGGAGGG
TGCCAGAGCATACTTGGCGGAGCGCGTGACACAGTTGTGCGCGGATGCGT
CGACAATTATCTTGCAAATTGAAGAAGGTGTTGTAGATGGGGAGGAGTCA
CTTGTCGAAATGGTCAAGTCAGTGCGCCAGGCCACCAAGCCAAGTGCCTT
GTTTTGGGGGATGATGGTTAAAGCACCTGCATCCATGACATGGTCGGCAA
CAAGCATCAGCGCTCTACACAAAATGGAAATACAGGCACTTATTCCCGCT
ACCACTGTGGCCGGAAACAAGATCAGCACCACGACTACAACCAATACGGG
CCCCACCGATCTACTTAATCCGTTGCTTCCCTTGGGCCAGTCGTTGGTTG
ATGGCGTAGACGCCTTCTTGGCATGCCTACGCACCGATCGTTCCGATGGA
CTTTTTACTACAGTGGTGGTGGACGAAAGCAACATGGCACTGGGCTTGGT
GTATTCGAGCGGGGAAAGCGTGCGGGCGTCGGTAGCGGAGCAGCGTGGCA
TTTACTACTCCCGGTCTCGGTCCAGCCTTTGGCGGAAAGGAGACTCGAGT
GGAGCTGTGCAGGAGTTGGTCAGTCTGGATATGGACTGCGACTCTGACGC
TTTGCGCTTTGTTGTGCGGCAACGTGGCGACCCCCCGGTGAGTGGCCAGG
TGGTGTTAGGGGAGGGCATGGTTAGCTATGTATGATGTGGTGTGCGGCCG
TTTGAGAAATAATCATTAGGGGGAAAGACAGCACACACCGGCTTGTATGA
TTTCAAAGAAATCAAGATCACCTTCGCTACAGGCACCATGTAATGTACGG
TCAACTAATTCAATCTATACCTGGCGCTCTACCATCGCAACATAGGCCTT
TTGTCACTTGAATCGACGCAATTGTTGGCAACGAGATCGAGGCCTTACCG
CCTTGCAACGAACCTTGGAGGAACGCTTGAAGAAAGCGACCGAGGGTTCT
TATACTCGTAGACTCTTTCAGGATCCAGAGCTGCTGCGACACAAGCTGGT
TGAAGAAGCACAGGAGCTTAGTGAGGCTGTGGAACCTGACGACGTGGCGG
CAGAGGCAGCGGACGTGTTTTACTTTGCGTTGGTGCGGTGCGTGGCGGCG
GGTGTTGGTTTAGAGGACGTCGAGCGGCACCTTGACGCCCGGATGCTCAA
GCTAGCGAGACGACCAGGCAATGCTAAGGCCTACCGGATCGAGGCAGCTA
AGGCTATTTTGGCTAATGAAAGTCCGCCATCGGCCTCCCCGTCGTGATCT
CGTGATCTTGAGGCGGAGATGTCATCGATACATAGAGAACAGAGAGAGAG
AGTAGAACATCAACCTTAAAAGAGAAGAAATTATCCTTT
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Coding sequence (CDS) from alignment at chr2:886268..888556+

>NO02G03300.1 ID=NO02G03300.1|Name=NO02G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr2:886268..888556+ (Nannochloropsis oceanica)
ATGCCAGTGAACAGGGTCAGAGAAGAACTTGCCCCCCTCCCTCGCGATCG
TGTGGGGGCCATCGTCGTCGTGGACGCCAAGGAGGGTGCCAGAGCATACT
TGGCGGAGCGCGTGACACAGTTGTGCGCGGATGCGTCGACAATTATCTTG
CAAATTGAAGAAGGTGTTGTAGATGGGGAGGAGTCACTTGTCGAAATGGT
CAAGTCAGTGCGCCAGGCCACCAAGCCAAGTGCCTTGTTTTGGGGGATGA
TGGTTAAAGCACCTGCATCCATGACATGGTCGGCAACAAGCATCAGCGCT
CTACACAAAATGGAAATACAGGCACTTATTCCCGCTACCACTGTGGCCGG
AAACAAGATCAGCACCACGACTACAACCAATACGGGCCCCACCGATCTAC
TTAATCCGTTGCTTCCCTTGGGCCAGTCGTTGGTTGATGGCGTAGACGCC
TTCTTGGCATGCCTACGCACCGATCGTTCCGATGGACTTTTTACTACAGT
GGTGGTGGACGAAAGCAACATGGCACTGGGCTTGGTGTATTCGAGCGGGG
AAAGCGTGCGGGCGTCGGTAGCGGAGCAGCGTGGCATTTACTACTCCCGG
TCTCGGTCCAGCCTTTGGCGGAAAGGAGACTCGAGTGGAGCTGTGCAGGA
GTTGGTCAGTCTGGATATGGACTGCGACTCTGACGCTTTGCGCTTTGTTG
TGCGGCAACGTGGCGACCCCCCGGCCTTTTGTCACTTGAATCGACGCAAT
TGTTGGCAACGAGATCGAGGCCTTACCGCCTTGCAACGAACCTTGGAGGA
ACGCTTGAAGAAAGCGACCGAGGGTTCTTATACTCGTAGACTCTTTCAGG
ATCCAGAGCTGCTGCGACACAAGCTGGTTGAAGAAGCACAGGAGCTTAGT
GAGGCTGTGGAACCTGACGACGTGGCGGCAGAGGCAGCGGACGTGTTTTA
CTTTGCGTTGGTGCGGTGCGTGGCGGCGGGTGTTGGTTTAGAGGACGTCG
AGCGGCACCTTGACGCCCGGATGCTCAAGCTAGCGAGACGACCAGGCAAT
GCTAAGGCCTACCGGATCGAGGCAGCTAAGGCTATTTTGGCTAATGAAAG
TCCGCCATCGGCCTCCCCGTCGTGA
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Synonyms
Publications