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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:877420..880376 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03270.1 vs.
Match: EWM30292.1 (glucose-6-phosphate isomerase [Nannochloropsis gaditana]) HSP 1 Score: 1000.3 bits (2585), Expect = 2.600e-288 Identity = 492/562 (87.54%), Postives = 531/562 (94.48%), Query Frame = 0
Query: 57 MPGIETSTVWKTLATHADRMKRVHLRDLLTDAARNSALTVNANGILFDYSRQNVNIETMDFLMDLADAAMLEQKRAAMYAGEKINTTEGRAVLHVALRAARSAEIMVDGVNQVPLVYEVLDHIKDFSARVLSNKFVGATGKPLKNVISIGIGGSYLGPEFVHEAIKCVPQAAEVAKGRTLRFLANVDPVDVARATQGLDPEETLVVVVSKTFTTAETMLNARTLRKWLLEGIKGTAPEDVIRQHMVAASSAVPLVTDFGVDPANIFGFWDWVGGRYSVCSAVGVLPLALVFGFEVLEQFLAGARNIDEHFATAPLRENIPVLMGLLGVWNSTFLGHESRAILPYAQALLRFPAHVQQLDMESNGKRVGIDGRELPFQAGEVNFGEPGTNGQHSFYQLIHQGRTIPTEFIGFARSQQPIELPDEMVSGQDELMSNFFAQPDALALGKTRDQLQVENVAEDLRPHKEFPGNRPSFSLLFGQLDPFTTGQLLALYEHRVFVQGAIWGINSFDQWGVELGKVLAKQVRTQLAASRQGEATISGFNSSTAAMIRFYLLNSTSGSISS 619
MPGIETST WKTLA HA+RMKR HLRDLL DAARNSAL++ ANGILFD+SRQNVNIETMDFLMDLA AAMLE+KRAAM++GEKIN TEGRAVLHVALRA RSA I+VDGVNQVPLV++VLDHIKDFS RVL+ FVGATGK LKN+ISIGIGGSYLGPEFV+EAIKCVPQAAEVA+GRTLRFLANVDPVDVARAT+GL+PEETLVVVVSKTFTTAETMLNARTLRKWLL+G+KGT PE+VIR+HMVAASSAVPLVT+FG+D AN+FGFWDWVGGRYSVCSAVG+LPL+L FGFE+LEQFLAGARNIDEHFATAP+R+NIPVLMGLLG+WNSTFLGHESRAILPYAQALLRFPAHVQQLDMESNGKRVG+DG+ELPFQAGEVNFGEPGTNGQHSFYQLIHQGRTIPTEFIGFARSQ P+ELP+E+VS QDELMSNFFAQPDALALGKT +QL VE V E+LRPHK FPGNRPSFSLLFGQLDPFTTGQLLALYEHRVFVQGAIWGINSFDQWGVELGKVLAKQVRTQL ASRQGE ISGFNSSTAAM+ FYL NS+ S S+
Sbjct: 1 MPGIETSTAWKTLAAHAERMKRTHLRDLLGDAARNSALSIKANGILFDFSRQNVNIETMDFLMDLAGAAMLEEKRAAMFSGEKINVTEGRAVLHVALRAERSATILVDGVNQVPLVHDVLDHIKDFSHRVLTGTFVGATGKSLKNIISIGIGGSYLGPEFVYEAIKCVPQAAEVAEGRTLRFLANVDPVDVARATKGLNPEETLVVVVSKTFTTAETMLNARTLRKWLLDGVKGTGPEEVIRRHMVAASSAVPLVTEFGIDSANVFGFWDWVGGRYSVCSAVGMLPLSLTFGFEILEQFLAGARNIDEHFATAPIRQNIPVLMGLLGIWNSTFLGHESRAILPYAQALLRFPAHVQQLDMESNGKRVGLDGQELPFQAGEVNFGEPGTNGQHSFYQLIHQGRTIPTEFIGFARSQYPVELPNEVVSSQDELMSNFFAQPDALALGKTLEQLDVEGVKEELRPHKTFPGNRPSFSLLFGQLDPFTTGQLLALYEHRVFVQGAIWGINSFDQWGVELGKVLAKQVRTQLTASRQGEKIISGFNSSTAAMLNFYLSNSSESSGSA 562
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03270.1 ID=NO02G03270.1|Name=NO02G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2363bp
TCCCCGTCTTGCCTTTTCGAAGTTCGTGCCTCATCTTCTATTTTACTTTT
TTGCCTTTGGCTCGGGCTCTATTGTCATTTCATTTATGGCGCTTTGCCCA
ACTTATTCGCTGCGCACCCGGGCCATTTAGACATGGAATCTGTGCCCGTC
GGCCAAAATGAAATTAAAAAAAAAATGCAGCCAGGTCGTAGGCTGAATCA
TGTTTGCCCGATGAGCCAATAAGAAATGAGTTAACTACCACCTTTCTAGG
TCGCAGGACCCACACCATCCATGCGCAGGTACTGGAAATGGCTGCCGAAC
CCCCTACTCAACTGCCGCAGACAGGCCCTTGTCTTACCTGCCATCGTAGC
TCTCTCATCATCATCCCCCCCCATCATCTTCATTACCACCCATCCACTTT
CTGTCACAGATTCAAGGACGCACCAATTGAACATAAACATGCCGGGCATA
GAGACGAGTACCGTGTGGAAGACACTGGCGACACACGCCGATAGGATGAA
GCGCGTTCACCTTCGTGACCTACTTACGGACGCCGCACGAAATTCAGCCC
TCACCGTCAACGCCAACGGCATCCTGTTCGATTACTCCCGGCAGAACGTG
AATATCGAGACGATGGACTTTCTGATGGACCTGGCGGACGCGGCAATGCT
GGAGCAGAAGCGGGCGGCAATGTACGCCGGTGAGAAAATCAACACCACCG
AAGGCCGTGCCGTGCTGCACGTTGCCTTGCGCGCTGCGCGCTCTGCGGAG
ATCATGGTGGACGGCGTGAACCAGGTCCCGTTGGTGTACGAGGTGCTTGA
CCACATCAAGGACTTCTCCGCTCGAGTGCTTTCCAACAAGTTTGTAGGCG
CAACGGGCAAGCCCCTCAAGAACGTCATCTCCATCGGCATTGGCGGCAGC
TACCTGGGACCCGAGTTTGTCCACGAGGCCATTAAGTGCGTGCCCCAAGC
CGCTGAGGTAGCGAAAGGGCGCACGCTACGTTTCCTTGCCAACGTGGATC
CTGTTGATGTGGCGCGAGCCACGCAGGGGCTGGACCCGGAGGAAACGCTG
GTGGTAGTGGTGTCCAAGACTTTTACCACAGCCGAGACCATGCTAAACGC
GCGAACCCTCCGTAAATGGCTTTTGGAAGGGATCAAGGGCACTGCGCCCG
AGGACGTCATCCGTCAGCACATGGTGGCCGCCTCGTCCGCTGTACCGCTC
GTCACGGACTTCGGTGTGGATCCGGCCAATATCTTCGGATTCTGGGACTG
GGTGGGTGGCCGGTACTCGGTCTGCTCTGCTGTGGGCGTGCTGCCTCTCG
CCCTTGTCTTCGGCTTCGAGGTGCTTGAACAATTTCTGGCGGGAGCACGC
AACATCGACGAGCACTTCGCCACAGCGCCCCTGCGTGAGAACATTCCCGT
GCTGATGGGCCTACTGGGAGTCTGGAACTCCACCTTCCTGGGCCACGAGA
GCCGCGCCATCCTGCCCTATGCGCAGGCCCTCCTCCGCTTTCCCGCGCAC
GTGCAGCAGCTTGATATGGAGAGCAACGGCAAGCGCGTGGGCATCGACGG
CCGTGAGCTGCCCTTCCAGGCGGGTGAGGTGAATTTCGGGGAGCCAGGCA
CCAATGGACAGCACTCCTTCTACCAGCTCATTCACCAGGGCCGGACGATT
CCCACGGAGTTCATCGGCTTCGCCCGTAGCCAGCAGCCCATCGAGCTGCC
CGATGAGATGGTAAGTGGCCAGGACGAGCTCATGTCCAACTTTTTCGCGC
AGCCCGATGCCTTGGCCCTGGGCAAGACACGAGATCAGCTGCAGGTAGAG
AACGTGGCGGAGGATCTGCGCCCGCACAAAGAGTTCCCCGGCAACCGACC
CTCTTTCTCCCTGCTCTTTGGCCAGCTGGACCCCTTCACCACGGGGCAGC
TGCTGGCCCTGTACGAGCACCGCGTCTTCGTACAGGGCGCCATCTGGGGC
ATTAACTCTTTCGACCAGTGGGGTGTGGAGCTGGGCAAGGTCCTGGCCAA
GCAGGTGCGCACCCAGCTTGCCGCAAGCCGCCAGGGTGAAGCCACCATAT
CTGGCTTTAACAGCTCCACCGCCGCCATGATTCGCTTCTATCTTCTCAAC
AGCACCTCCGGGAGCATCAGCAGCAACAGCCGCAGCTAGAGAAAAGTTGG
ACGTGTGACAACACCTCTTGAGAAGGGGGCTTGGTATTTCTTCCAAAGTT
GTCTCGTTACACCAACGCATTCATACTTCGGCGGGGCTACAAGTTAGCAC
AGCGAGATATGCAGTAGAGAGTAGGCCATTCACCGAGGAAGAGGTAAAGG
GAGTGATCTTGGCGTATTATATTCTATTTTTCATTCGTTCAAATTATAAT
CAAAAGTGTGATA back to topprotein sequence of NO02G03270.1 >NO02G03270.1-protein ID=NO02G03270.1-protein|Name=NO02G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MRRYWKWLPNPLLNCRRQALVLPAIVALSSSSPPIIFITTHPLSVTDSRT
HQLNINMPGIETSTVWKTLATHADRMKRVHLRDLLTDAARNSALTVNANG
ILFDYSRQNVNIETMDFLMDLADAAMLEQKRAAMYAGEKINTTEGRAVLH
VALRAARSAEIMVDGVNQVPLVYEVLDHIKDFSARVLSNKFVGATGKPLK
NVISIGIGGSYLGPEFVHEAIKCVPQAAEVAKGRTLRFLANVDPVDVARA
TQGLDPEETLVVVVSKTFTTAETMLNARTLRKWLLEGIKGTAPEDVIRQH
MVAASSAVPLVTDFGVDPANIFGFWDWVGGRYSVCSAVGVLPLALVFGFE
VLEQFLAGARNIDEHFATAPLRENIPVLMGLLGVWNSTFLGHESRAILPY
AQALLRFPAHVQQLDMESNGKRVGIDGRELPFQAGEVNFGEPGTNGQHSF
YQLIHQGRTIPTEFIGFARSQQPIELPDEMVSGQDELMSNFFAQPDALAL
GKTRDQLQVENVAEDLRPHKEFPGNRPSFSLLFGQLDPFTTGQLLALYEH
RVFVQGAIWGINSFDQWGVELGKVLAKQVRTQLAASRQGEATISGFNSST
AAMIRFYLLNSTSGSISSNSRS* back to topmRNA from alignment at chr2:877420..880376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03270.1 ID=NO02G03270.1|Name=NO02G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2957bp|location=Sequence derived from alignment at chr2:877420..880376- (Nannochloropsis oceanica)
TCCCCGTCTTGCCTTTTCGAAGTTCGTGCCTCATCTTCTATTTTACTTTT
TTGCCTTTGGCTCGGGCTCTATTGTCATTTCATTTATGGCGCTTTGCCCA
ACTTATTCGCTGCGCACCCGGGCCATTTAGACATGGAATCTGTGCCCGTC
GGCCAAAATGAAATTAAAAAAAAAATGCAGCCAGGTCGTAGGCTGAATCA
TGTTTGCCCGATGAGCCAATAAGAAATGAGTTAACTACCACCTTTCTAGG
TCGCAGGACCCACACCATCCATGCGCAGGTACTGGAAATGGCTGCCGAAC
CCCCTACTCAACTGCCGCAGACAGGCCCTTGTCTTACCTGCCATCGTAGC
TCTCTCATCATCATCCCCCCCCATCATCTTCATTACCACCCATCCACTTT
CTGTCACAGATTCAAGGACGCACCAATTGAACATAAACATGCCGGGCATA
GAGACGAGTACCGTGTGGAAGACACTGGCGACACACGCCGATAGGATGAA
GCGCGTTCACCTTCGTGACCTACTTACGGACGCCGCACGAAATTCAGCCC
TCACCGTCAACGCCAACGGCATCCTGTTCGATTACTCCCGGCAGAACGTG
AATATCGAGGTATGTGGAAGAGAAGAGAGTTCACAATGAAGTACGAGAGT
TCAACCTGTCATAGGAAAGGAGCACTTGTAAGGCAAGACTAGGAATGCGA
GCATACAGCATCTTTATCATAGGCTAAGGGCAGATTCCTCATGACTTGCT
GGCAAGCATAGTCACATAAAGCGGGAGTTCGACCATTGGATGACGCTCCT
GAATCCATAGCATGTACGCCTTTCCCTTTCTTTCTAATATAGACGATGGA
CTTTCTGATGGACCTGGCGGACGCGGCAATGCTGGAGCAGAAGCGGGTAC
GTTGCCATTTCGTATAATGGGAAAGGGATAGGGCCTCAATCAAGGCCACT
GAACGGGAACATATACCGGACTTGAATGTGTGAAGAAAAGTCTTGTAAAG
AGATTGTGATGTATAACAAGCACTTTTGATTTGTTAATTTTCACTTCGTA
TCATTCGTCTTTGCCGATTGTCGTTTTTAGGCGGCAATGTACGCCGGTGA
GAAAATCAACACCACCGAAGGCCGTGCCGTGCTGCACGTTGCCTTGCGCG
CTGCGCGCTCTGCGGAGATCATGGTGGACGGCGTGAACCAGGTCCCGTTG
GTGTACGAGGTGCTTGACCACATCAAGGACTTCTCCGCTCGAGTGCTTTC
CAACAAGTTTGTAGGCGCAACGGGCAAGCCCCTCAAGAACGTCATCTCCA
TCGGCATTGGCGGCAGCTACCTGGGACCCGAGTTTGTCCACGAGGCCATT
AAGTGCGGTACGTGTCTGAGGCAGTCCTGCTTTGCGAGAGGTTGATGTCA
ACCACAGGTGCAATGTCTCGGGAAATAAATTTCTTTTCTCTTCACTTTTG
CCCATCTCCCTATCCCCTGCCGGCTATCCTGAATGTCCACACTACCGGCT
CTCAACACTCTCTCCTTCTTTCCCTACTCCCTAGTGCCCCAAGCCGCTGA
GGTAGCGAAAGGGCGCACGCTACGTTTCCTTGCCAACGTGGATCCTGTTG
ATGTGGCGCGAGCCACGCAGGGGCTGGACCCGGAGGAAACGCTGGTGGTA
GTGGTGTCCAAGACTTTTACCACAGCCGAGACCATGCTAAACGCGCGAAC
CCTCCGTAAATGGCTTTTGGAAGGGATCAAGGGCACTGCGCCCGAGGACG
TCATCCGTCAGCACATGGTGGCCGCCTCGTCCGCTGTACCGCTCGTCACG
GACTTCGGTGTGGATCCGGCCAATATCTTCGGATTCTGGGACTGGGTGGG
TGGCCGGTACTCGGTCTGCTCTGCTGTGGGCGTGCTGCCTCTCGCCCTTG
TCTTCGGCTTCGAGGTGCTTGAACAATTTCTGGCGGGAGCACGCAACATC
GACGAGCACTTCGCCACAGCGCCCCTGCGTGAGAACATTCCCGTGCTGAT
GGGCCTACTGGGAGTCTGGAACTCCACCTTCCTGGGCCACGAGAGCCGCG
CCATCCTGCCCTATGCGCAGGCCCTCCTCCGCTTTCCCGCGCACGTGCAG
CAGCTTGATATGGAGAGCAACGGCAAGCGCGTGGGCATCGACGGCCGTGA
GCTGCCCTTCCAGGCGGGTGAGGTGAATTTCGGGGAGCCAGGCACCAATG
GACAGCACTCCTTCTACCAGCTCATTCACCAGGGCCGGACGATTCCCACG
GAGTTCATCGGCTTCGCCCGTAGCCAGCAGCCCATCGAGCTGCCCGATGA
GATGGTAAGTGGCCAGGACGAGCTCATGTCCAACTTTTTCGCGCAGCCCG
ATGCCTTGGCCCTGGGCAAGACACGAGATCAGCTGCAGGTAGAGAACGTG
GCGGAGGATCTGCGCCCGCACAAAGAGTTCCCCGGCAACCGACCCTCTTT
CTCCCTGCTCTTTGGCCAGCTGGACCCCTTCACCACGGGGCAGCTGCTGG
CCCTGTACGAGCACCGCGTCTTCGTACAGGGCGCCATCTGGGGCATTAAC
TCTTTCGACCAGTGGGGTGTGGAGCTGGGCAAGGTCCTGGCCAAGCAGGT
GCGCACCCAGCTTGCCGCAAGCCGCCAGGGTGAAGCCACCATATCTGGCT
TTAACAGCTCCACCGCCGCCATGATTCGCTTCTATCTTCTCAACAGCACC
TCCGGGAGCATCAGCAGCAACAGCCGCAGCTAGAGAAAAGTTGGACGTGT
GACAACACCTCTTGAGAAGGGGGCTTGGTATTTCTTCCAAAGTTGTCTCG
TTACACCAACGCATTCATACTTCGGCGGGGCTACAAGTTAGCACAGCGAG
ATATGCAGTAGAGAGTAGGCCATTCACCGAGGAAGAGGTAAAGGGAGTGA
TCTTGGCGTATTATATTCTATTTTTCATTCGTTCAAATTATAATCAAAAG
TGTGATA back to topCoding sequence (CDS) from alignment at chr2:877420..880376- >NO02G03270.1 ID=NO02G03270.1|Name=NO02G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr2:877420..880376- (Nannochloropsis oceanica)
ATGCGCAGGTACTGGAAATGGCTGCCGAACCCCCTACTCAACTGCCGCAG
ACAGGCCCTTGTCTTACCTGCCATCGTAGCTCTCTCATCATCATCCCCCC
CCATCATCTTCATTACCACCCATCCACTTTCTGTCACAGATTCAAGGACG
CACCAATTGAACATAAACATGCCGGGCATAGAGACGAGTACCGTGTGGAA
GACACTGGCGACACACGCCGATAGGATGAAGCGCGTTCACCTTCGTGACC
TACTTACGGACGCCGCACGAAATTCAGCCCTCACCGTCAACGCCAACGGC
ATCCTGTTCGATTACTCCCGGCAGAACGTGAATATCGAGACGATGGACTT
TCTGATGGACCTGGCGGACGCGGCAATGCTGGAGCAGAAGCGGGCGGCAA
TGTACGCCGGTGAGAAAATCAACACCACCGAAGGCCGTGCCGTGCTGCAC
GTTGCCTTGCGCGCTGCGCGCTCTGCGGAGATCATGGTGGACGGCGTGAA
CCAGGTCCCGTTGGTGTACGAGGTGCTTGACCACATCAAGGACTTCTCCG
CTCGAGTGCTTTCCAACAAGTTTGTAGGCGCAACGGGCAAGCCCCTCAAG
AACGTCATCTCCATCGGCATTGGCGGCAGCTACCTGGGACCCGAGTTTGT
CCACGAGGCCATTAAGTGCGTGCCCCAAGCCGCTGAGGTAGCGAAAGGGC
GCACGCTACGTTTCCTTGCCAACGTGGATCCTGTTGATGTGGCGCGAGCC
ACGCAGGGGCTGGACCCGGAGGAAACGCTGGTGGTAGTGGTGTCCAAGAC
TTTTACCACAGCCGAGACCATGCTAAACGCGCGAACCCTCCGTAAATGGC
TTTTGGAAGGGATCAAGGGCACTGCGCCCGAGGACGTCATCCGTCAGCAC
ATGGTGGCCGCCTCGTCCGCTGTACCGCTCGTCACGGACTTCGGTGTGGA
TCCGGCCAATATCTTCGGATTCTGGGACTGGGTGGGTGGCCGGTACTCGG
TCTGCTCTGCTGTGGGCGTGCTGCCTCTCGCCCTTGTCTTCGGCTTCGAG
GTGCTTGAACAATTTCTGGCGGGAGCACGCAACATCGACGAGCACTTCGC
CACAGCGCCCCTGCGTGAGAACATTCCCGTGCTGATGGGCCTACTGGGAG
TCTGGAACTCCACCTTCCTGGGCCACGAGAGCCGCGCCATCCTGCCCTAT
GCGCAGGCCCTCCTCCGCTTTCCCGCGCACGTGCAGCAGCTTGATATGGA
GAGCAACGGCAAGCGCGTGGGCATCGACGGCCGTGAGCTGCCCTTCCAGG
CGGGTGAGGTGAATTTCGGGGAGCCAGGCACCAATGGACAGCACTCCTTC
TACCAGCTCATTCACCAGGGCCGGACGATTCCCACGGAGTTCATCGGCTT
CGCCCGTAGCCAGCAGCCCATCGAGCTGCCCGATGAGATGGTAAGTGGCC
AGGACGAGCTCATGTCCAACTTTTTCGCGCAGCCCGATGCCTTGGCCCTG
GGCAAGACACGAGATCAGCTGCAGGTAGAGAACGTGGCGGAGGATCTGCG
CCCGCACAAAGAGTTCCCCGGCAACCGACCCTCTTTCTCCCTGCTCTTTG
GCCAGCTGGACCCCTTCACCACGGGGCAGCTGCTGGCCCTGTACGAGCAC
CGCGTCTTCGTACAGGGCGCCATCTGGGGCATTAACTCTTTCGACCAGTG
GGGTGTGGAGCTGGGCAAGGTCCTGGCCAAGCAGGTGCGCACCCAGCTTG
CCGCAAGCCGCCAGGGTGAAGCCACCATATCTGGCTTTAACAGCTCCACC
GCCGCCATGATTCGCTTCTATCTTCTCAACAGCACCTCCGGGAGCATCAG
CAGCAACAGCCGCAGCTAG back to top
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