NO02G03260.1, NO02G03260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03260.1
Unique NameNO02G03260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1006
Alignment locationchr2:876414..877419 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:876414..877419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03260.1 vs.
Match: EWM30288.1 (hypothetical protein Naga_100003g159 [Nannochloropsis gaditana])

HSP 1 Score: 101.3 bits (251), Expect = 3.900e-18
Identity = 53/102 (51.96%), Postives = 65/102 (63.73%), Query Frame = 0 
Query:  110 MDRQKFETMFPSLVAHYPTVRSKSYYKVPGRRSGPGTAPILLEGGADLTASIGSKEDFWVALDVLLDKSLGPGDALPVRQAFVDVYKKHLSRLNIEQIEELA 212
            MDRQKFE MFPSLVAHYP VR + +Y  P RR+ P  A   +  GADLTA I S    W A + LL    G  D   V++ F  VY++HL+ LN+EQIEE+A
Sbjct:   65 MDRQKFEAMFPSLVAHYPKVRGREHYSPPERRT-PRPATQHVADGADLTARISSHGVLWAAFEDLLSIFFGTDDVACVKRTFATVYEEHLNSLNLEQIEEVA 165
The following BLAST results are available for this feature:
BLAST of NO02G03260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30288.13.900e-1851.96hypothetical protein Naga_100003g159 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03260NO02G03260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03260.1NO02G03260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03260.1.cds1NO02G03260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03260.1 ID=NO02G03260.1|Name=NO02G03260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp
CTGCCGTTATAATTTCTTTTGTTGCGGGGGGTGAAAAGGAATGAAGGGGC
ATAGAGAGGGTTGGGGAGAAACGACGGTAACAATAAGTGAAGGCTGCAGT
ATGGTCAGACAAGAGGAGGCTAGGGTACGCAAAGACAATTATTGTGGAGA
GACATCAATTCGGTCAAGAACCGCCTGTTGAGCGCTATTATGGTTGTCCA
GAATAACTAGTACCACCTAGGTACGAGCTTATAAAACTTTAGTCGGAGGC
GGTCGGTCGGGGCTTACTTAGTGCTTGAGATAAGATTTTCCACATCAATT
GGAAAGCATGTAGAGTACGTTTAATGCTAAATCCGCGTCTCACTGGAAAT
GAAAAAACATATTGTGCAGTGCATAGTATCCTTAGGAAAGATTATGAACT
ACTGAACTCTCACCGTTCGCGTAACTGTCTACTACGATCAGCAGGGCCTG
TGATGCCTTGTCACGACATTGATCAGTGTCGGCCTGCTGTCGGCTGTCGC
ATCGCATCATCGCTCAGCACGCACCTTATACACAATGGTGTTACATTACC
AAGGACACAGGACTGTTGCGTTTCATCGCACTCTCTCTTGCTCCTCGCCT
GGACAGAGCCTTCTGCGCCCCAAGGAAGCAACCCCGACCATCATACAATC
ATGGACCGTCAAAAGTTTGAGACAATGTTCCCCTCCCTTGTGGCGCACTA
CCCCACAGTACGGAGCAAGAGTTATTATAAGGTCCCGGGACGACGCTCGG
GTCCGGGTACAGCACCCATACTTTTAGAGGGCGGGGCAGATTTGACAGCA
AGCATTGGTTCGAAAGAGGATTTTTGGGTCGCTCTGGATGTGCTGCTGGA
TAAAAGCCTTGGGCCCGGCGATGCTTTACCTGTCCGGCAGGCATTCGTTG
ATGTGTACAAAAAGCATTTAAGCAGGTTGAACATAGAGCAAATAGAAGAG
TTGGCAAACAGTGTGTAACACGATAAAGGAAAGATAGAAAATGTATCAAA
TGCACG
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protein sequence of NO02G03260.1

>NO02G03260.1-protein ID=NO02G03260.1-protein|Name=NO02G03260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MLNPRLTGNEKTYCAVHSILRKDYELLNSHRSRNCLLRSAGPVMPCHDID
QCRPAVGCRIASSLSTHLIHNGVTLPRTQDCCVSSHSLLLLAWTEPSAPQ
GSNPDHHTIMDRQKFETMFPSLVAHYPTVRSKSYYKVPGRRSGPGTAPIL
LEGGADLTASIGSKEDFWVALDVLLDKSLGPGDALPVRQAFVDVYKKHLS
RLNIEQIEELANSV*
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mRNA from alignment at chr2:876414..877419+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03260.1 ID=NO02G03260.1|Name=NO02G03260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp|location=Sequence derived from alignment at chr2:876414..877419+ (Nannochloropsis oceanica)
CTGCCGTTATAATTTCTTTTGTTGCGGGGGGTGAAAAGGAATGAAGGGGC
ATAGAGAGGGTTGGGGAGAAACGACGGTAACAATAAGTGAAGGCTGCAGT
ATGGTCAGACAAGAGGAGGCTAGGGTACGCAAAGACAATTATTGTGGAGA
GACATCAATTCGGTCAAGAACCGCCTGTTGAGCGCTATTATGGTTGTCCA
GAATAACTAGTACCACCTAGGTACGAGCTTATAAAACTTTAGTCGGAGGC
GGTCGGTCGGGGCTTACTTAGTGCTTGAGATAAGATTTTCCACATCAATT
GGAAAGCATGTAGAGTACGTTTAATGCTAAATCCGCGTCTCACTGGAAAT
GAAAAAACATATTGTGCAGTGCATAGTATCCTTAGGAAAGATTATGAACT
ACTGAACTCTCACCGTTCGCGTAACTGTCTACTACGATCAGCAGGGCCTG
TGATGCCTTGTCACGACATTGATCAGTGTCGGCCTGCTGTCGGCTGTCGC
ATCGCATCATCGCTCAGCACGCACCTTATACACAATGGTGTTACATTACC
AAGGACACAGGACTGTTGCGTTTCATCGCACTCTCTCTTGCTCCTCGCCT
GGACAGAGCCTTCTGCGCCCCAAGGAAGCAACCCCGACCATCATACAATC
ATGGACCGTCAAAAGTTTGAGACAATGTTCCCCTCCCTTGTGGCGCACTA
CCCCACAGTACGGAGCAAGAGTTATTATAAGGTCCCGGGACGACGCTCGG
GTCCGGGTACAGCACCCATACTTTTAGAGGGCGGGGCAGATTTGACAGCA
AGCATTGGTTCGAAAGAGGATTTTTGGGTCGCTCTGGATGTGCTGCTGGA
TAAAAGCCTTGGGCCCGGCGATGCTTTACCTGTCCGGCAGGCATTCGTTG
ATGTGTACAAAAAGCATTTAAGCAGGTTGAACATAGAGCAAATAGAAGAG
TTGGCAAACAGTGTGTAACACGATAAAGGAAAGATAGAAAATGTATCAAA
TGCACG
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Coding sequence (CDS) from alignment at chr2:876414..877419+

>NO02G03260.1 ID=NO02G03260.1|Name=NO02G03260.1|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at chr2:876414..877419+ (Nannochloropsis oceanica)
ATGCTAAATCCGCGTCTCACTGGAAATGAAAAAACATATTGTGCAGTGCA
TAGTATCCTTAGGAAAGATTATGAACTACTGAACTCTCACCGTTCGCGTA
ACTGTCTACTACGATCAGCAGGGCCTGTGATGCCTTGTCACGACATTGAT
CAGTGTCGGCCTGCTGTCGGCTGTCGCATCGCATCATCGCTCAGCACGCA
CCTTATACACAATGGTGTTACATTACCAAGGACACAGGACTGTTGCGTTT
CATCGCACTCTCTCTTGCTCCTCGCCTGGACAGAGCCTTCTGCGCCCCAA
GGAAGCAACCCCGACCATCATACAATCATGGACCGTCAAAAGTTTGAGAC
AATGTTCCCCTCCCTTGTGGCGCACTACCCCACAGTACGGAGCAAGAGTT
ATTATAAGGTCCCGGGACGACGCTCGGGTCCGGGTACAGCACCCATACTT
TTAGAGGGCGGGGCAGATTTGACAGCAAGCATTGGTTCGAAAGAGGATTT
TTGGGTCGCTCTGGATGTGCTGCTGGATAAAAGCCTTGGGCCCGGCGATG
CTTTACCTGTCCGGCAGGCATTCGTTGATGTGTACAAAAAGCATTTAAGC
AGGTTGAACATAGAGCAAATAGAAGAGTTGGCAAACAGTGTGTAA
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Synonyms
Publications