NO02G03240.1, NO02G03240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03240.1
Unique NameNO02G03240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1248
Alignment locationchr2:870943..872190 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:870943..872190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G03240.1 vs.
Match: EWM30228.1 (mitochondrial-processing peptidase alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 467.6 bits (1202), Expect = 4.000e-128
Identity = 265/402 (65.92%), Postives = 318/402 (79.10%), Query Frame = 0 
Query:    1 MLRLTRAVPKNLLALASRSQSS-------------LACLDEEFPGLPALNPAVGTPRLVETTTLPSGVKVVSTACGKMSSVGLSVAAGSMYEALPSENGAALLLKHLAFKGTAARSSLRLMRDLESVGSIPSASVGREAVVYRVTSQPDFAEQALQAVFETALTPKITPYLVSELQVAAAADMEAYAADARLQLSEALYEAAYGENTPLGRPLYFPGTDVTSGSLAAYRAKTFGSGSLTVVGVGVAHAQLSSWAAGLTEGLARGSARAAPISAYVGGEARLKASSDATFVGLALAAPSKADAGALGVLAAAWQAALPAGASVFTLPGLVGVTGVASPSAAGAYVDSLLQVLKSTGEDFALAKKAAQVAALIKLDWALFEGLADGSATVAVDGVSEAEVKALH 390
            M RLTRA   + L + +   S              L  LDEE+P LPALNP+V +P  VET+TL +GVKVVST  GK +SVGLSVAAGS++E +P E G+ALLL+HLAFKGT+ RS+LRL+RDLESVG+ PSA  GRE+++Y+VT+ P++AE AL+A FETAL+PKITPYLVSELQ AAAADME +AADARLQL EALYEAAYGENTPLG PLY  G+ +T+GSLAAYRAKT+G+  +TV G GVAHAQL+SWA  L +GLA GS++AAP S Y+GGEARLKA+SD+TFVGLAL AP + DAG L VLAAAWQ+ALPAGA+VFTLPGLVGVTG ASP+A G+YVD+L QV+K TG+DFA AKKAAQVAAL KLD ++FEGLADG A++     S  E   LH
Sbjct:    2 MWRLTRATKLHKLLVPAAGASGRGHGRGLASSANRLVDLDEEYPDLPALNPSVASPFNVETSTLSNGVKVVSTLAGKTTSVGLSVAAGSLFE-VPGEEGSALLLQHLAFKGTSKRSALRLLRDLESVGAAPSALAGRESLLYKVTALPEYAESALEAAFETALSPKITPYLVSELQTAAAADMETFAADARLQLGEALYEAAYGENTPLGHPLYHLGSQLTAGSLAAYRAKTYGANFITVFGTGVAHAQLASWATRLADGLAPGSSKAAPASPYIGGEARLKATSDSTFVGLALCAPDRKDAGVLEVLAAAWQSALPAGAAVFTLPGLVGVTGAASPTAVGSYVDALFQVVKGTGKDFATAKKAAQVAALTKLDGSVFEGLADGRASL----TSGKEASLLH 398
The following BLAST results are available for this feature:
BLAST of NO02G03240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30228.14.000e-12865.92mitochondrial-processing peptidase alpha subunit [... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03240NO02G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03240.1NO02G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03240.1.cds1NO02G03240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03240.1 ID=NO02G03240.1|Name=NO02G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
ATGTTGCGGCTTACTCGCGCTGTCCCCAAGAACCTGCTGGCATTGGCCAG
CCGTAGTCAGAGCTCCTTGGCCTGCCTTGATGAGGAGTTCCCTGGATTGC
CTGCTTTGAACCCTGCTGTCGGTACGCCGCGTTTGGTGGAGACAACTACG
CTTCCTAGCGGGGTGAAGGTGGTTTCTACGGCATGCGGGAAGATGTCTTC
TGTGGGATTGTCTGTGGCTGCGGGCAGTATGTACGAGGCTCTCCCAAGTG
AGAACGGCGCTGCCTTGTTGCTTAAACATCTTGCCTTTAAAGGGACCGCG
GCACGGTCCTCTTTGCGACTTATGCGCGACCTGGAGAGCGTGGGTTCGAT
CCCGTCAGCCAGTGTCGGAAGGGAGGCTGTGGTGTATCGCGTCACTTCGC
AGCCCGACTTCGCGGAGCAAGCTCTCCAGGCTGTTTTTGAGACCGCTTTG
ACGCCAAAGATAACGCCCTACCTCGTCTCGGAGCTGCAAGTCGCCGCTGC
CGCGGACATGGAAGCCTACGCCGCGGATGCACGTCTGCAGCTGAGCGAGG
CCTTGTACGAGGCGGCCTACGGGGAGAACACGCCCTTAGGCCGGCCCCTA
TACTTCCCAGGCACGGATGTCACTTCGGGATCCCTCGCCGCCTATCGCGC
CAAAACCTTTGGGTCCGGCTCGCTCACTGTGGTGGGGGTTGGGGTCGCGC
ATGCCCAGCTTTCGTCTTGGGCGGCGGGCCTGACGGAGGGATTAGCTAGG
GGCAGCGCCAGGGCTGCGCCTATCTCGGCGTATGTTGGGGGTGAGGCGCG
TCTCAAGGCTTCTTCGGATGCCACTTTTGTGGGCTTGGCACTGGCAGCAC
CAAGCAAGGCGGACGCGGGGGCGTTGGGCGTGTTGGCCGCAGCCTGGCAG
GCGGCCTTGCCTGCGGGCGCGTCCGTCTTTACGCTACCTGGCCTGGTGGG
CGTGACGGGCGTGGCTTCTCCCAGTGCGGCGGGGGCCTACGTGGATTCGT
TACTTCAGGTGCTCAAGAGCACGGGGGAGGACTTTGCCTTGGCCAAAAAA
GCAGCACAAGTAGCGGCCTTGATCAAGCTGGACTGGGCGCTTTTTGAAGG
CCTGGCAGACGGGAGTGCCACAGTTGCTGTTGACGGGGTTTCCGAGGCGG
AAGTCAAGGCTCTTCATGCCAAGATCTGGAAGGGTGGCCTCAGCATTGCC
TCGCTCGGGGATGTGAGCAAGGTGCCCAAGCTCTCCAGCCTCAAGTAA
back to top

protein sequence of NO02G03240.1

>NO02G03240.1-protein ID=NO02G03240.1-protein|Name=NO02G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MLRLTRAVPKNLLALASRSQSSLACLDEEFPGLPALNPAVGTPRLVETTT
LPSGVKVVSTACGKMSSVGLSVAAGSMYEALPSENGAALLLKHLAFKGTA
ARSSLRLMRDLESVGSIPSASVGREAVVYRVTSQPDFAEQALQAVFETAL
TPKITPYLVSELQVAAAADMEAYAADARLQLSEALYEAAYGENTPLGRPL
YFPGTDVTSGSLAAYRAKTFGSGSLTVVGVGVAHAQLSSWAAGLTEGLAR
GSARAAPISAYVGGEARLKASSDATFVGLALAAPSKADAGALGVLAAAWQ
AALPAGASVFTLPGLVGVTGVASPSAAGAYVDSLLQVLKSTGEDFALAKK
AAQVAALIKLDWALFEGLADGSATVAVDGVSEAEVKALHAKIWKGGLSIA
SLGDVSKVPKLSSLK*
back to top

mRNA from alignment at chr2:870943..872190+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03240.1 ID=NO02G03240.1|Name=NO02G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at chr2:870943..872190+ (Nannochloropsis oceanica)
ATGTTGCGGCTTACTCGCGCTGTCCCCAAGAACCTGCTGGCATTGGCCAG
CCGTAGTCAGAGCTCCTTGGCCTGCCTTGATGAGGAGTTCCCTGGATTGC
CTGCTTTGAACCCTGCTGTCGGTACGCCGCGTTTGGTGGAGACAACTACG
CTTCCTAGCGGGGTGAAGGTGGTTTCTACGGCATGCGGGAAGATGTCTTC
TGTGGGATTGTCTGTGGCTGCGGGCAGTATGTACGAGGCTCTCCCAAGTG
AGAACGGCGCTGCCTTGTTGCTTAAACATCTTGCCTTTAAAGGGACCGCG
GCACGGTCCTCTTTGCGACTTATGCGCGACCTGGAGAGCGTGGGTTCGAT
CCCGTCAGCCAGTGTCGGAAGGGAGGCTGTGGTGTATCGCGTCACTTCGC
AGCCCGACTTCGCGGAGCAAGCTCTCCAGGCTGTTTTTGAGACCGCTTTG
ACGCCAAAGATAACGCCCTACCTCGTCTCGGAGCTGCAAGTCGCCGCTGC
CGCGGACATGGAAGCCTACGCCGCGGATGCACGTCTGCAGCTGAGCGAGG
CCTTGTACGAGGCGGCCTACGGGGAGAACACGCCCTTAGGCCGGCCCCTA
TACTTCCCAGGCACGGATGTCACTTCGGGATCCCTCGCCGCCTATCGCGC
CAAAACCTTTGGGTCCGGCTCGCTCACTGTGGTGGGGGTTGGGGTCGCGC
ATGCCCAGCTTTCGTCTTGGGCGGCGGGCCTGACGGAGGGATTAGCTAGG
GGCAGCGCCAGGGCTGCGCCTATCTCGGCGTATGTTGGGGGTGAGGCGCG
TCTCAAGGCTTCTTCGGATGCCACTTTTGTGGGCTTGGCACTGGCAGCAC
CAAGCAAGGCGGACGCGGGGGCGTTGGGCGTGTTGGCCGCAGCCTGGCAG
GCGGCCTTGCCTGCGGGCGCGTCCGTCTTTACGCTACCTGGCCTGGTGGG
CGTGACGGGCGTGGCTTCTCCCAGTGCGGCGGGGGCCTACGTGGATTCGT
TACTTCAGGTGCTCAAGAGCACGGGGGAGGACTTTGCCTTGGCCAAAAAA
GCAGCACAAGTAGCGGCCTTGATCAAGCTGGACTGGGCGCTTTTTGAAGG
CCTGGCAGACGGGAGTGCCACAGTTGCTGTTGACGGGGTTTCCGAGGCGG
AAGTCAAGGCTCTTCATGCCAAGATCTGGAAGGGTGGCCTCAGCATTGCC
TCGCTCGGGGATGTGAGCAAGGTGCCCAAGCTCTCCAGCCTCAAGTAA
back to top

Coding sequence (CDS) from alignment at chr2:870943..872190+

>NO02G03240.1 ID=NO02G03240.1|Name=NO02G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr2:870943..872190+ (Nannochloropsis oceanica)
ATGTTGCGGCTTACTCGCGCTGTCCCCAAGAACCTGCTGGCATTGGCCAG
CCGTAGTCAGAGCTCCTTGGCCTGCCTTGATGAGGAGTTCCCTGGATTGC
CTGCTTTGAACCCTGCTGTCGGTACGCCGCGTTTGGTGGAGACAACTACG
CTTCCTAGCGGGGTGAAGGTGGTTTCTACGGCATGCGGGAAGATGTCTTC
TGTGGGATTGTCTGTGGCTGCGGGCAGTATGTACGAGGCTCTCCCAAGTG
AGAACGGCGCTGCCTTGTTGCTTAAACATCTTGCCTTTAAAGGGACCGCG
GCACGGTCCTCTTTGCGACTTATGCGCGACCTGGAGAGCGTGGGTTCGAT
CCCGTCAGCCAGTGTCGGAAGGGAGGCTGTGGTGTATCGCGTCACTTCGC
AGCCCGACTTCGCGGAGCAAGCTCTCCAGGCTGTTTTTGAGACCGCTTTG
ACGCCAAAGATAACGCCCTACCTCGTCTCGGAGCTGCAAGTCGCCGCTGC
CGCGGACATGGAAGCCTACGCCGCGGATGCACGTCTGCAGCTGAGCGAGG
CCTTGTACGAGGCGGCCTACGGGGAGAACACGCCCTTAGGCCGGCCCCTA
TACTTCCCAGGCACGGATGTCACTTCGGGATCCCTCGCCGCCTATCGCGC
CAAAACCTTTGGGTCCGGCTCGCTCACTGTGGTGGGGGTTGGGGTCGCGC
ATGCCCAGCTTTCGTCTTGGGCGGCGGGCCTGACGGAGGGATTAGCTAGG
GGCAGCGCCAGGGCTGCGCCTATCTCGGCGTATGTTGGGGGTGAGGCGCG
TCTCAAGGCTTCTTCGGATGCCACTTTTGTGGGCTTGGCACTGGCAGCAC
CAAGCAAGGCGGACGCGGGGGCGTTGGGCGTGTTGGCCGCAGCCTGGCAG
GCGGCCTTGCCTGCGGGCGCGTCCGTCTTTACGCTACCTGGCCTGGTGGG
CGTGACGGGCGTGGCTTCTCCCAGTGCGGCGGGGGCCTACGTGGATTCGT
TACTTCAGGTGCTCAAGAGCACGGGGGAGGACTTTGCCTTGGCCAAAAAA
GCAGCACAAGTAGCGGCCTTGATCAAGCTGGACTGGGCGCTTTTTGAAGG
CCTGGCAGACGGGAGTGCCACAGTTGCTGTTGACGGGGTTTCCGAGGCGG
AAGTCAAGGCTCTTCATGCCAAGATCTGGAAGGGTGGCCTCAGCATTGCC
TCGCTCGGGGATGTGAGCAAGGTGCCCAAGCTCTCCAGCCTCAAGTAA
back to top
Synonyms
Publications