NO02G03170.4, NO02G03170.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03170.4
Unique NameNO02G03170.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2451
Alignment locationchr2:851715..854613 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:851715..854613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03170.4 vs.
Match: EWM30268.1 (udp-sugar transporter ust74c [Nannochloropsis gaditana])

HSP 1 Score: 393.7 bits (1010), Expect = 5.300e-106
Identity = 208/277 (75.09%), Postives = 238/277 (85.92%), Query Frame = 0 
Query:    1 MSWEVLRVMAPLVIISLVNVLSGLGGTQKISLPMFTALRRFSILMTMLLEAYVFGTRPSVAVKLSVFLMIFGALVAALSDLTFDTVGYFMIFLSDLFTALNGVVMKRTLTACPSVNKMAVLYYNSLFGVIIMVGLLSTREEEMEAVRSFTHWNEPRFLLSFCLAAGMGSILNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMIFMSDYIFSWENFVGLHISIVGSLVYSFVELQSILKGRERAVMDMKSRKHAGGRIHVPVGGGKGASKREAELVR 278
            MSWEV+RVMAPLV+ISLVNVL+GLGGTQK+SLPMFTALRRFSILMTMLLEAYVFGT PS AVK+SVF+MI GALVAA+SDL+FDTVGY MI LSDLFTALNGVVMK+TL++  +VNKMAVLYYNSLFGV++M  L++ R+EE+  VR F HW +P F+L F LA  MGS+LNYSIFLCTLYNSALTTTVVGCLKNILTTYIGM  +SDYIFSWENF+G+HISI GSLVYS+VELQSIL  +ER   D+ SRK   GRIH P      +SKREAE++R
Sbjct:   71 MSWEVVRVMAPLVVISLVNVLAGLGGTQKVSLPMFTALRRFSILMTMLLEAYVFGTSPSTAVKMSVFMMIIGALVAAMSDLSFDTVGYAMILLSDLFTALNGVVMKKTLSSSSTVNKMAVLYYNSLFGVVMMGLLMTLRDEELARVREFRHWQDPHFVLYFFLAGAMGSVLNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMFLISDYIFSWENFLGIHISIAGSLVYSYVELQSILNNKERPGTDLTSRKKL-GRIHHPGKLADRSSKREAEMIR 346
The following BLAST results are available for this feature:
BLAST of NO02G03170.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30268.15.300e-10675.09udp-sugar transporter ust74c [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03170NO02G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03170.4NO02G03170.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03170.4.cds1NO02G03170.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03170.4.cds2NO02G03170.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03170.4.cds3NO02G03170.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03170.4.cds4NO02G03170.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03170.4 ID=NO02G03170.4|Name=NO02G03170.4|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp
CTGCATCGGGGACATCTTTGCTGTATATGCGTAGTGAGATAGATTATCAG
TTGAGAGGGGTTCTCGAGAGAGGAGTCGGTGCGGCATGAAATGGTTTTGT
ACAAGGCACAAGGTAGCCCAGGAATTTTGTTCCTTCTCTCTATTCAAAAC
CGCCCCCATGCCTTTGGCACGCAACAGCATAACCATGGGCGGACAGCACT
CTCCTTGAATTTGCGCCAGCCGAGGGCTAAGGACTGATAAATAGACTGGT
AAAGACAGATCAAAGGGGGCGCCATGGTTTTAGCTTTCGGTGGTGTGCCC
ATCGAAGCACCGAAGCATCTCGGTCGCTCTCTGAGGGGCACCCCATGGTG
AAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGGCTTTTT
GTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAAAGTTAC
AGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATTTCTGTA
GCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTATGGCCCC
CGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGA
GCGCCTCCCTCTCCATCATGGTCATCAACAAGGTATGTACGTGTCTAAGA
GCTCGGATTGACGCTGGACGGGCAGCTAGGAGTGGTTGAAACGAAAAGCA
GGATGGCGTGGGCGTCGTGTGCAAGCTCCGGAGCTTCTCGTCGAAGCACG
ACGGAGCCTGCCCAAAGCCGATGCGGCTGCTCCATACTGTTGAAACGTGC
AGAGTAGAGGTCGAAGGGGGCTTCTTCGTTTTGAGCCGGCGGACAACGGC
TTCATCGAGCGCTTACGATCCACTGGCTGCGCCCGATGGGGCATGCCGCA
TCCTCTCCTGATCTTCACAAGGCTATTTACGTATGCATTGCTTTCTGTTG
AAAAGCTTGCCATAAATCTTGCGTGTTCATTCCTAGATCTGTGTCGATCA
TGCCTTTCTGAACACTAACATGAATCACGCTTATAACACCTTGCTCCTTC
CCTCCCTCGGGCTAGGTCGTCCTAACAATCTACCACTTCCCTTCCTTCGC
CTTCCTGGCCGCCTGTCAATTCCTGTTCACTACCCTCGTCATTTTCTGTC
TGAAAGTCGTCGGACGCGTGCAAGTCACGGCCATGTCCTGGGAGGTTTTG
CGCGTCATGGCGCCACTCGTGATCATCTCCCTCGTCAACGTCTTGTCCGG
CCTAGGTGGTACGCAAAAGATCTCCTTGCCCATGTTTACGGCCCTGCGTC
GATTTTCCATATTGATGACGATGCTGCTTGAAGCATATGTTTTTGGCACC
AGACCGTCGGTGGCCGTGAAATTAAGTGTGTTCCTCATGATTTTTGGGGC
CCTCGTGGCGGCGCTTTCCGACTTGACGTTCGACACAGTGGGGTACTTCA
TGATTTTTTTGTCGGATTTGTTTACGGCTTTGAATGGGGTGGTGATGAAG
AGGACGCTGACTGCTTGCCCTTCTGTCAACAAGATGGCAGTTCTGTACTA
TAACAGTCTGTTTGGCGTAATAATCATGGTGGGGTTGCTGAGCACGCGAG
AAGAAGAGATGGAGGCTGTTCGAAGCTTTACTCATTGGAATGAGCCCCGA
TTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATGGGCTCCATCCTCAACTA
CTCCATTTTCCTCTGCACCCTATACAATAGTGCGCTCACCACCACTGTCG
TTGGCTGTCTCAAGAACATCTTGACCACGTACATTGGCATGATCTTCATG
AGTGACTATATCTTCTCGTGGGAGAACTTCGTGGGCTTGCACATCTCCAT
TGTTGGTTCCTTGGTCTACTCGTTCGTTGAGCTCCAGTCCATCCTCAAGG
GCAGAGAGCGAGCAGTCATGGACATGAAAAGCCGTAAGCACGCGGGAGGG
CGCATTCACGTGCCCGTGGGCGGCGGCAAGGGGGCGAGCAAGCGGGAAGC
AGAGCTGGTGCGTCTGCTCGACCAGCGGCCGCCTTCGGGTGGCGGCAACA
CAGGACCCGAGGAGAAAGAAGACGCTGTTTTGGTCTAACGGCGACTTTCT
CTTCTTAATGGCCCTCCCCTTTCCACCTTTTTTTCGGTTTTCCCGTTCGA
TGCTTCATATTTGTCCTGCCCCGAACATCCAAATAGTATTTTAAAAACTC
TGAACCAAAGCGAATGGAAGACTAAAATCACAAAGAATCAGTGTGTTTTG
GGGCGAGAGGCCGTGAGAGAGGGAACAAGGACTGTAAGATGTTATGGAAG
TGTACATCAGTCAAAAATAAAAAAATAGAGGTAGACAACCCTAGATCCGC
CTTCGCCCCTCCGACCTCCTGGGATCCGAATTAGCAGACCCAATCAAAAC
GTCCCGCCACAAAGACGAAAAGAGCAGGAGAAAAAGAATAAAAGTACCAT
G
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protein sequence of NO02G03170.4

>NO02G03170.4-protein ID=NO02G03170.4-protein|Name=NO02G03170.4|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MSWEVLRVMAPLVIISLVNVLSGLGGTQKISLPMFTALRRFSILMTMLLE
AYVFGTRPSVAVKLSVFLMIFGALVAALSDLTFDTVGYFMIFLSDLFTAL
NGVVMKRTLTACPSVNKMAVLYYNSLFGVIIMVGLLSTREEEMEAVRSFT
HWNEPRFLLSFCLAAGMGSILNYSIFLCTLYNSALTTTVVGCLKNILTTY
IGMIFMSDYIFSWENFVGLHISIVGSLVYSFVELQSILKGRERAVMDMKS
RKHAGGRIHVPVGGGKGASKREAELVRLLDQRPPSGGGNTGPEEKEDAVL
V*
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mRNA from alignment at chr2:851715..854613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03170.4 ID=NO02G03170.4|Name=NO02G03170.4|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp|location=Sequence derived from alignment at chr2:851715..854613+ (Nannochloropsis oceanica)
CTGCATCGGGGACATCTTTGCTGTATATGCGTAGTGAGATAGATTATCAG
TTGAGAGGGGTTCTCGAGAGAGGAGTCGGTGCGGCATGAAATGGTTTTGT
ACAAGGCACAAGGTAGCCCAGGAATTTTGTTCCTTCTCTCTATTCAAAAC
CGCCCCCATGCCTTTGGCACGCAACAGCATAACCATGGGCGGACAGCACT
CTCCTTGAATTTGCGCCAGCCGAGGGCTAAGGACTGATAAATAGACTGGT
AAAGACAGATCAAAGGGGGCGCCATGGTTTTAGCTTTCGGTGGTGTGCCC
ATCGAAGCACCGAAGCATCTCGGTCGCTCTCTGAGGGGCACCCCATGGTG
AAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGGCTTTTT
GTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAAAGTTAC
AGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATTTCTGTA
GCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTATGGCCCC
CGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGA
GCGCCTCCCTCTCCATCATGGTCATCAACAAGGTATGTACGTGTCTAAGA
GCTCGGATTGACGCTGGACGGGCAGCTAGGAGTGGTTGAAACGAAAAGCA
GGATGGCGTGGGCGTCGTGTGCAAGCTCCGGAGCTTCTCGTCGAAGCACG
ACGGAGCCTGCCCAAAGCCGATGCGGCTGCTCCATACTGTTGAAACGTGC
AGAGTAGAGGTCGAAGGGGGCTTCTTCGTTTTGAGCCGGCGGACAACGGC
TTCATCGAGCGCTTACGATCCACTGGCTGCGCCCGATGGGGCATGCCGCA
TCCTCTCCTGATCTTCACAAGGCTATTTACGTATGCATTGCTTTCTGTTG
AAAAGCTTGCCATAAATCTTGCGTGTTCATTCCTAGATCTGTGTCGATCA
TGCCTTTCTGAACACTAACATGAATCACGCTTATAACACCTTGCTCCTTC
CCTCCCTCGGGCTAGGTCGTCCTAACAATCTACCACTTCCCTTCCTTCGC
CTTCCTGGCCGCCTGTCAATTCCTGTTCACTACCCTCGTCATTTTCTGTC
TGAAAGTCGTCGGACGCGTGCAAGTCACGGCCATGTCCTGGGAGGTTTTG
CGCGTCATGGCGCCACTCGTGATCATCTCCCTCGTCAACGTCTTGTCCGG
CCTAGGTGGTACGCAAAAGATCTCCTTGCCCATGTTTACGGCCCTGCGTC
GATTTTCCATATTGATGACGATGCTGCTTGAAGCATATGTTTTTGGCACC
AGACCGTCGGTGGCCGTGAAATTAAGTGTGTTCCTCATGATTTTTGGGGC
CCTCGTGGCGGCGCTTTCCGACTTGACGTTCGACACAGTGGGGTACTTCA
TGATTTTTTTGTCGGATTTGTTTACGGCTTTGAATGGGGTGGTGATGAAG
AGGACGCTGACTGCTTGCCCTTCTGTCAACAAGATGGCAGTTCTGTACTA
TAACAGTCTGTTTGGGTAGGTGACGAAAGGAGGGAGGGGGAGGAAAGGGG
TGAGGGGGAGGACCTTGCTTCACGACGAAGCTAATTACGTAGAGACGGGT
ATTCGTCTGTCTCTTACCACATTCTTCACTTCCCGTCTTCATTTGAACAC
CTTTTCCGTCGCTCACAGCGTAATAATCATGGTGGGGTTGCTGAGCACGC
GAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTCATTGGAATGAGCCC
CGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATGGGCTCCATCCTCAA
CTACTCCATTTTCCTCTGCACCCTATACAATAGTGCGCTCACCACCACTG
TCGTTGGCTGTCTCAAGGTAACTAAAGCCCCTTTCTCCCTCTGATATTTT
TTTCTCATCTCACACTACATCTATGGGCGTCAAATATTCATCTACCTACA
CACCTCCCTCCCTCCTCCCTCCCTCCCTCCCCCCTGAAGAACATCTTGAC
CACGTACATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGA
ACTTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTC
GTTGAGCTCCAGTCCATCCTCAAGGGCAGAGAGGTATGAAGTGAGGGAAT
GAAAGAGGATTGGGTATGCTGATAGTTTCCCTTTGGGAGAAATGGTTGAA
GAGAGGGGTAGGTGCGGGCCCTTTCCTGCTGAGGTGGTTTCGGTCCTCCA
CTACCTTTTCCTCCTTTCACGAACCCCTTGTCATTCCACTCTTCTTTTTT
CCACAGCGAGCAGTCATGGACATGAAAAGCCGTAAGCACGCGGGAGGGCG
CATTCACGTGCCCGTGGGCGGCGGCAAGGGGGCGAGCAAGCGGGAAGCAG
AGCTGGTGCGTCTGCTCGACCAGCGGCCGCCTTCGGGTGGCGGCAACACA
GGACCCGAGGAGAAAGAAGACGCTGTTTTGGTCTAACGGCGACTTTCTCT
TCTTAATGGCCCTCCCCTTTCCACCTTTTTTTCGGTTTTCCCGTTCGATG
CTTCATATTTGTCCTGCCCCGAACATCCAAATAGTATTTTAAAAACTCTG
AACCAAAGCGAATGGAAGACTAAAATCACAAAGAATCAGTGTGTTTTGGG
GCGAGAGGCCGTGAGAGAGGGAACAAGGACTGTAAGATGTTATGGAAGTG
TACATCAGTCAAAAATAAAAAAATAGAGGTAGACAACCCTAGATCCGCCT
TCGCCCCTCCGACCTCCTGGGATCCGAATTAGCAGACCCAATCAAAACGT
CCCGCCACAAAGACGAAAAGAGCAGGAGAAAAAGAATAAAAGTACCATG
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Coding sequence (CDS) from alignment at chr2:851715..854613+

>NO02G03170.4 ID=NO02G03170.4|Name=NO02G03170.4|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr2:851715..854613+ (Nannochloropsis oceanica)
ATGTCCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCATCTCCCT
CGTCAACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCCTTGCCCA
TGTTTACGGCCCTGCGTCGATTTTCCATATTGATGACGATGCTGCTTGAA
GCATATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAAGTGTGTT
CCTCATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTGACGTTCG
ACACAGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTTACGGCTTTG
AATGGGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTGTCAACAA
GATGGCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAATCATGGTGG
GGTTGCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACT
CATTGGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCAT
GGGCTCCATCCTCAACTACTCCATTTTCCTCTGCACCCTATACAATAGTG
CGCTCACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTGACCACGTAC
ATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGAACTTCGT
GGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTCGTTGAGC
TCCAGTCCATCCTCAAGGGCAGAGAGCGAGCAGTCATGGACATGAAAAGC
CGTAAGCACGCGGGAGGGCGCATTCACGTGCCCGTGGGCGGCGGCAAGGG
GGCGAGCAAGCGGGAAGCAGAGCTGGTGCGTCTGCTCGACCAGCGGCCGC
CTTCGGGTGGCGGCAACACAGGACCCGAGGAGAAAGAAGACGCTGTTTTG
GTCTAA
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Synonyms
Publications