NO02G03130.3, NO02G03130.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03130.3
Unique NameNO02G03130.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1496
Alignment locationchr2:840775..842546 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:840775..842546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G03130.3 vs.
Match: EWM30358.1 (dolichol-phosphate mannosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 324.3 bits (830), Expect = 2.400e-85
Identity = 162/183 (88.52%), Postives = 172/183 (93.99%), Query Frame = 0
Query:    2 LQTLYGPEIIQIRQRPGKLGLGSAYMDGLALVRGNLVVLMDADLSHHPKFIPAMYRKQLEGGFDVVTGTRYALGGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMARVRSRGYVFQMEVIVRARQLGFKIAEVPITFVDRIYGESKLGALEIVAYLRGLGQLFISI 185
            LQ LYGP++IQI QRPGKLGLGSAY+DGLAL R + VVLMDADLSHHPKFIP ++RKQ EG FDVVTGTRYA+GGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVM RVRS+GYVFQMEVIVRARQLG +IAEVPITFVDRIYGESKLGA EIVAYLRGLGQLF+SI
Sbjct:   75 LQELYGPQVIQIHQRPGKLGLGSAYVDGLALARADRVVLMDADLSHHPKFIPELFRKQQEGDFDVVTGTRYAMGGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMGRVRSKGYVFQMEVIVRARQLGLRIAEVPITFVDRIYGESKLGAGEIVAYLRGLGQLFLSI 257          
The following BLAST results are available for this feature:
BLAST of NO02G03130.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30358.12.400e-8588.52dolichol-phosphate mannosyltransferase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03130NO02G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03130.3NO02G03130.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03130.3.cds1NO02G03130.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03130.3.cds2NO02G03130.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03130.3 ID=NO02G03130.3|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp
CCACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATT
CGCCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCG
AGCTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTA
GTGCTGTGGCTGGTGTACAAGCACTTGACGGCAAGGTGCGTGCGGGTAAA
TAATTGGCAGGAGGGCGCTGGAAAGAGGGAGGATGAGGAATATGGGCTCT
GCGATGATTCAACGGAGACACAGGGCGTCTCGCCGCCTGTGGTGTGTGTC
TGTACAGGGCGCACACACACAAGTCCTCGCAATCGTTGATCGGAGATAGA
ACAGGATGGAGTGAGATCGGTGCATTATTATAGCTTCTCTCTTTACCTTC
GGCAGTGTCAAGAGCGGATGATGCCAAACTCCCTTCCATTAAGGGGTGAT
TGTGGTGGGATTGGCTTCTGCTTTGCGCATCCCCTCACGGATCTGTACTT
TCTCCAACTGTGCACCAAGCCTATTTCTCCCCCTCTATCTCTTAACAACA
TTTATAGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCT
GACGGCACTCTGGAAGTAGCGCAGCAGTTGCAGGTAAGTAGGAGTTGATG
TTGGGCAAGGAGACGGGCATCTTTGTCAGAATATAAAAGTCGGGTCAAGT
TTGCCAGGAAGATGGCTATATATATGGATATGGATAAATATCTAGATGTA
GATATCAGCAAACATAGATGGAGATAGATCAAGATAGACAGATAAGGACA
TATGCACACATAAGAAACAGACATAGACAACACAGACTCTCGCCTCTTGT
ACATTCATACACCCCCAAATGTTGCAGACATTGTACGGCCCCGAGATAAT
CCAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGG
ACGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGAT
CTCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGAAAGCAGCTAGA
AGGAGGCTTTGATGTGGTGACGGGGACACGTTACGCCTTGGGCGGAGGCG
TAAGTGGGTGGGACCTAAGACGGAAGCTCATCAGCCGAGGCGCCAACTTC
CTCGCTGCCTTTCTGCTGCAACCGGGCGTGTCGGATTTGACAGGCTCCTT
CCGCTTGTACCGGAAATCGGCATTGGCGGCAGTCATGGCGCGCGTACGAT
CGCGGGGTTATGTGTTTCAAATGGAGGTGATTGTGCGAGCCCGGCAATTG
GGCTTCAAAATTGCTGAGGTGCCGATTACTTTTGTAGATCGCATCTACGG
AGAGAGCAAATTGGGGGCCTTGGAAATTGTGGCGTACCTACGCGGATTAG
GCCAGCTTTTTATTTCGATATAAATGAAGGGCATTAGTGAATTGGGCTCA
GCGTAGAACGAAGACGGGGAAAAGACGTGTTTACATACGTAGATAG
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protein sequence of NO02G03130.3

>NO02G03130.3-protein ID=NO02G03130.3-protein|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MLQTLYGPEIIQIRQRPGKLGLGSAYMDGLALVRGNLVVLMDADLSHHPK
FIPAMYRKQLEGGFDVVTGTRYALGGGVSGWDLRRKLISRGANFLAAFLL
QPGVSDLTGSFRLYRKSALAAVMARVRSRGYVFQMEVIVRARQLGFKIAE
VPITFVDRIYGESKLGALEIVAYLRGLGQLFISI*
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mRNA from alignment at chr2:840775..842546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03130.3 ID=NO02G03130.3|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at chr2:840775..842546+ (Nannochloropsis oceanica)
CCACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATT CGCCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCG AGCTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTA GTGCTGTGGCTGGTGTACAAGCACTTGACGGCAAGGTGCGTGCGGGTAAA TAATTGGCAGGAGGGCGCTGGAAAGAGGGAGGATGAGGAATATGGGCTCT GCGATGATTCAACGGAGACACAGGGCGTCTCGCCGCCTGTGGTGTGTGTC TGTACAGGGCGCACACACACAAGTCCTCGCAATCGTTGATCGGAGATAGA ACAGGATGGAGTGAGATCGGTGCATTATTATAGCTTCTCTCTTTACCTTC GGCAGTGTCAAGAGCGGATGATGCCAAACTCCCTTCCATTAAGGGGTGAT TGTGGTGGGATTGGCTTCTGCTTTGCGCATCCCCTCACGGATCTGTACTT TCTCCAACTGTGCACCAAGCCTATTTCTCCCCCTCTATCTCTTAACAACA TTTATAGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCT GACGGCACTCTGGAAGTAGCGCAGCAGTTGCAGGTAAGTAGGAGTTGATG TTGGGCAAGGAGACGGGCATCTTTGTCAGAATATAAAAGTCGGGTCAAGT TTGCCAGGAAGATGGCTATATATATGGATATGGATAAATATCTAGATGTA GATATCAGCAAACATAGATGGAGATAGATCAAGATAGACAGATAAGGACA TATGCACACATAAGAAACAGACATAGACAACACAGACTCTCGCCTCTTGT ACATTCATACACCCCCAAATGTTGCAGACATTGTACGGCCCCGAGATAAT CCAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGG ACGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGAT CTCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGGTGCGTGTTTGT GGGTTGATTGCGATTGAACGCAAGGGTAGTCACAGAAGGGGATATTTGGT ACGAATTAATGAAATACAAAAAAAAATCGGCGGGCAATAGTTCATCAGGA AATACGGGCTGGAGCACGGCCTCCACATGCTGCCGCCAGGTTATACCACG TACCTTGGGGAAGGTGGTTAGGTGTCATGAATGTGTTCATAGTATTTCAT GCGCGATTTACTCACGTCCATCTACGGCACGCACTTCCACACATGCTGAT CCACAATATGACAGAAAGCAGCTAGAAGGAGGCTTTGATGTGGTGACGGG GACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAAGACGGA AGCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTGCAACCG GGCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATCGGCATT GGCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTCAAATGG AGGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAGGTGCCG ATTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGCCTTGGA AATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGATATAAA TGAAGGGCATTAGTGAATTGGGCTCAGCGTAGAACGAAGACGGGGAAAAG ACGTGTTTACATACGTAGATAG
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Coding sequence (CDS) from alignment at chr2:840775..842546+

>NO02G03130.3 ID=NO02G03130.3|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr2:840775..842546+ (Nannochloropsis oceanica)
ATGTTGCAGACATTGTACGGCCCCGAGATAATCCAAATACGCCAGCGGCC
GGGCAAGTTGGGCTTGGGCAGCGCCTATATGGACGGGCTGGCCTTGGTGC
GGGGGAATCTGGTAGTGCTGATGGACGCGGATCTCTCCCACCATCCCAAG
TTTATCCCAGCGATGTACCGAAAGCAGCTAGAAGGAGGCTTTGATGTGGT
GACGGGGACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAA
GACGGAAGCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTG
CAACCGGGCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATC
GGCATTGGCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTC
AAATGGAGGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAG
GTGCCGATTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGC
CTTGGAAATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGA
TATAA
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Synonyms
Publications