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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:825548..827797 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03080.1 vs.
Match: EWM30211.1 (UDPglucose pyrophosphorylase [Nannochloropsis gaditana]) HSP 1 Score: 986.5 bits (2549), Expect = 4.600e-284 Identity = 517/727 (71.11%), Postives = 598/727 (82.26%), Query Frame = 0
Query: 25 IVSSSPTVVLASTASSPSRHCWGTTVLRQNIYSHGGFVFPSKLLRESRPAGTIVSLSSPSHSRLFLGRRGGAVPSTTVPSTTVPAAAAGRVTTTAAAATGTSSSSSSPPTAIKLGSASTREVELFEMLMGLGQDHLFQNWPAAGEAEDAKHAFFQQVQQLDESYPGGVVAYVKKARALLGAAVRQENPFEGVTPSVPDGETLAYGTAEFAAAEERGLDEVAHAVFVLVAGGLGERLGYGGIKLALPVESTTGETYLEFYASYILALQARARQRTGDASLILPLAIMTSDDTDAQTRELLLRNGNFGMAEGQVVIVKQSKVPALQDSEARLTLADPYTLDTKPHGHGDVHHLLLRSGLTAQWLAEGRKWVFFMQDTNALVVNSILPALAVSATKGYDMNSICIPRKAGEASGAITKLTSRSGDAIIINVEYNQLDPLLRATTFPEGDTNDPSSGCSPFPGNANNIVMSLPSYHRVLQGVDQGVVEEFVNPKFKDSTRTAFTKPTRLECMMQDFPKLLAKEMGSTARVGFTSFEKWLSFSPAKNSLDAGAKAYAATGVPPATASSAEMDFYRSHLLKLRAALSASAAADGLKYGQVETFADIPLETGPRVVLTPALAVTTRELQEKFG-GRIRVSGRSTLVLDGKGIRIEALDLDGTLVVKAGPRAKVVVKDAVVRNEGWKLVATGEEAVEEERIRGFLIEKEGGVVIDLG-EAEGDFVVTGNGEVVKQ 750
I++SS + P R G++ R N GF P +LL+ S AGTIV PS + F RRGGA T+ T + T +A+ + ++SS A+K+ + S E ++F+ L+ LGQDHLFQ+WP AGEA+DAKH FF QVQQLD+SYPGG++AY+ KAR LL AAV QENPFEG+TPSVPDG+TL YG++EFAAAEE+GL E AHA FV+VAGGLGERLGYGGIKLALPVESTT TYLEFYASYILALQARAR RTGDASL+LPLAIMTSDDTD+QTRELL RN NFGM +GQ+ I+KQ KVPALQDS ARL AD YTLDTKPHGHGDVHHLLLRSGLTAQWLA G+KWVFF+QDTNALVVNS+LPALAVSAT GYDMNSICIPRKAGEASGAITKLT+R+GD+IIINVEYNQLDPLLRATT+P+GDTND S+GCSPFPGNANNIVM LP+YHRVLQG QGVVEEFVNPKFKDS+RTAFTKPTRLECMMQDFPKLLAKE+G ARVGFTSFEKWLSFSPAKNSL+AGAKA+AATGVPPATASSAEMDFYR+HLLK+R A+S S AA L G + +FADIPLETGPR+++TPA+AVT++EL ++ G GRI V+G STLVLDG GI +E+LDLDGT +++AGPRA+V V+DA VRN GW L G +AVEEERIRGF + K+ GVV+DLG +AEG+F+VTGNGEVVKQ
Sbjct: 18 IIASSFLFFACGASIWPPRGFRGSSTHRANTC---GFFPPLRLLKTSLSAGTIV----PSSADCFFRRRGGATSPTSFSGKTQSPTTNPKPTLSASPSPTSASS-----IALKMNTVSKEEDDIFKTLIDLGQDHLFQDWPPAGEADDAKHNFFLQVQQLDKSYPGGIMAYIHKARDLLRAAVAQENPFEGMTPSVPDGQTLTYGSSEFAAAEEKGLREAAHATFVVVAGGLGERLGYGGIKLALPVESTTSTTYLEFYASYILALQARARHRTGDASLLLPLAIMTSDDTDSQTRELLERNNNFGMQDGQMTIIKQDKVPALQDSNARLASADTYTLDTKPHGHGDVHHLLLRSGLTAQWLAAGKKWVFFLQDTNALVVNSVLPALAVSATHGYDMNSICIPRKAGEASGAITKLTNRNGDSIIINVEYNQLDPLLRATTYPDGDTNDQSTGCSPFPGNANNIVMYLPNYHRVLQGEAQGVVEEFVNPKFKDSSRTAFTKPTRLECMMQDFPKLLAKEIGGKARVGFTSFEKWLSFSPAKNSLEAGAKAFAATGVPPATASSAEMDFYRAHLLKIR-AVSGSRAAANLLDGPISSFADIPLETGPRIIVTPAVAVTSKELHDRVGKGRISVTGTSTLVLDGAGISVESLDLDGTFILRAGPRARVTVRDAKVRNAGWCLAPAGPDAVEEERIRGFRVIKDNGVVVDLGMDAEGEFLVTGNGEVVKQ 731
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03080.1 ID=NO02G03080.1|Name=NO02G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp
ATGCCATTGGACTTGTCGTCAAGAAGACAGGGGCAGCCGCTGCCCTATCT
ACTGCTGGCCACCGCTGTCGTCATCGTCTCCTCTTCTCCGACTGTCGTGC
TGGCCTCCACAGCATCATCACCATCACGACATTGTTGGGGCACCACAGTC
CTGCGGCAGAACATATATAGTCATGGGGGATTTGTTTTCCCATCAAAACT
GCTCAGAGAATCACGTCCGGCAGGCACGATTGTCTCTCTCTCCTCTCCTT
CCCACTCACGATTGTTCTTGGGCCGCCGCGGGGGGGCCGTCCCTTCCACC
ACCGTCCCTTCCACCACCGTTCCTGCAGCGGCTGCAGGTCGCGTGACGAC
GACAGCAGCTGCTGCCACGGGCACTTCTTCCTCTTCTTCCTCGCCTCCTA
CGGCCATCAAACTGGGGTCAGCCTCGACGCGAGAGGTCGAGCTGTTCGAG
ATGCTGATGGGCTTGGGGCAAGACCACCTCTTCCAAAACTGGCCGGCCGC
AGGGGAGGCAGAGGATGCAAAACACGCTTTCTTTCAGCAGGTGCAGCAGT
TAGATGAGAGCTACCCAGGTGGTGTTGTAGCTTATGTCAAGAAAGCTCGG
GCCTTGCTAGGGGCTGCTGTGAGGCAGGAAAACCCTTTTGAGGGTGTGAC
ACCCTCTGTACCTGACGGGGAGACACTAGCGTACGGGACGGCCGAATTTG
CCGCGGCGGAAGAAAGGGGATTGGACGAGGTGGCACATGCGGTCTTTGTC
TTGGTGGCGGGTGGATTAGGAGAGCGTTTAGGGTATGGAGGGATCAAACT
TGCGTTGCCTGTTGAGTCGACGACGGGGGAGACGTACCTGGAGTTTTATG
CGAGTTATATTTTGGCGTTGCAGGCACGCGCTCGGCAACGGACTGGCGAT
GCATCTTTGATCTTGCCTTTAGCCATTATGACTTCCGATGACACAGACGC
GCAGACCCGGGAGTTGTTGCTGCGCAATGGCAATTTCGGGATGGCAGAGG
GGCAGGTGGTGATTGTCAAGCAGAGCAAGGTCCCGGCCTTGCAAGACTCG
GAGGCCCGCCTGACCTTGGCTGATCCTTATACCCTCGACACCAAACCGCA
CGGACACGGTGACGTCCACCATCTCTTGCTCCGTAGCGGTCTGACCGCGC
AGTGGCTAGCTGAAGGCCGCAAATGGGTATTTTTTATGCAGGATACCAAT
GCCCTGGTCGTTAATTCCATCCTCCCTGCCCTGGCCGTGAGCGCCACCAA
GGGGTACGACATGAATAGCATCTGTATCCCCCGTAAGGCTGGGGAGGCTT
CCGGCGCCATCACCAAGCTGACCAGCCGGTCGGGTGACGCTATAATTATC
AATGTGGAATACAACCAGCTCGACCCCCTGTTACGTGCCACCACCTTCCC
GGAAGGCGATACCAATGACCCTTCCTCAGGCTGCTCCCCATTCCCTGGCA
ACGCCAATAATATCGTCATGTCCCTCCCTTCCTACCACCGCGTCCTCCAA
GGAGTCGACCAAGGAGTCGTCGAAGAATTCGTCAATCCCAAATTTAAAGA
TAGCACCCGCACGGCATTCACCAAACCCACCCGGCTCGAATGCATGATGC
AAGACTTTCCCAAGCTCCTGGCAAAGGAAATGGGGTCCACAGCCAGGGTT
GGATTCACGAGCTTCGAAAAATGGCTCTCGTTCTCCCCGGCCAAAAACAG
TCTGGATGCCGGGGCCAAGGCATACGCAGCTACAGGTGTGCCCCCCGCGA
CGGCCTCCAGTGCGGAGATGGACTTTTACCGGTCGCATTTGCTTAAACTG
CGCGCAGCCTTGTCAGCTTCCGCTGCTGCAGATGGTCTGAAATACGGCCA
GGTGGAGACGTTCGCTGATATTCCTTTGGAGACTGGACCTCGGGTTGTGT
TGACCCCTGCGCTGGCAGTGACAACCCGGGAGTTGCAGGAGAAGTTTGGC
GGGAGGATAAGAGTGTCAGGAAGGAGCACGCTGGTATTGGACGGTAAGGG
TATTCGTATTGAAGCGCTGGATTTGGACGGGACCTTGGTTGTGAAGGCGG
GGCCGAGGGCGAAGGTAGTTGTGAAGGATGCGGTGGTGAGGAATGAGGGG
TGGAAATTGGTGGCGACGGGAGAGGAGGCGGTGGAAGAGGAAAGAATCAG
AGGCTTTCTTATTGAGAAGGAGGGAGGGGTTGTGATTGACTTGGGGGAGG
CGGAGGGGGATTTTGTGGTGACGGGAAATGGGGAAGTAGTGAAACAGTGA back to topprotein sequence of NO02G03080.1 >NO02G03080.1-protein ID=NO02G03080.1-protein|Name=NO02G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp
MPLDLSSRRQGQPLPYLLLATAVVIVSSSPTVVLASTASSPSRHCWGTTV
LRQNIYSHGGFVFPSKLLRESRPAGTIVSLSSPSHSRLFLGRRGGAVPST
TVPSTTVPAAAAGRVTTTAAAATGTSSSSSSPPTAIKLGSASTREVELFE
MLMGLGQDHLFQNWPAAGEAEDAKHAFFQQVQQLDESYPGGVVAYVKKAR
ALLGAAVRQENPFEGVTPSVPDGETLAYGTAEFAAAEERGLDEVAHAVFV
LVAGGLGERLGYGGIKLALPVESTTGETYLEFYASYILALQARARQRTGD
ASLILPLAIMTSDDTDAQTRELLLRNGNFGMAEGQVVIVKQSKVPALQDS
EARLTLADPYTLDTKPHGHGDVHHLLLRSGLTAQWLAEGRKWVFFMQDTN
ALVVNSILPALAVSATKGYDMNSICIPRKAGEASGAITKLTSRSGDAIII
NVEYNQLDPLLRATTFPEGDTNDPSSGCSPFPGNANNIVMSLPSYHRVLQ
GVDQGVVEEFVNPKFKDSTRTAFTKPTRLECMMQDFPKLLAKEMGSTARV
GFTSFEKWLSFSPAKNSLDAGAKAYAATGVPPATASSAEMDFYRSHLLKL
RAALSASAAADGLKYGQVETFADIPLETGPRVVLTPALAVTTRELQEKFG
GRIRVSGRSTLVLDGKGIRIEALDLDGTLVVKAGPRAKVVVKDAVVRNEG
WKLVATGEEAVEEERIRGFLIEKEGGVVIDLGEAEGDFVVTGNGEVVKQ* back to topmRNA from alignment at chr2:825548..827797+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03080.1 ID=NO02G03080.1|Name=NO02G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at chr2:825548..827797+ (Nannochloropsis oceanica)
ATGCCATTGGACTTGTCGTCAAGAAGACAGGGGCAGCCGCTGCCCTATCT
ACTGCTGGCCACCGCTGTCGTCATCGTCTCCTCTTCTCCGACTGTCGTGC
TGGCCTCCACAGCATCATCACCATCACGACATTGTTGGGGCACCACAGTC
CTGCGGCAGAACATATATAGTCATGGGGGATTTGTTTTCCCATCAAAACT
GCTCAGAGAATCACGTCCGGCAGGCACGATTGTCTCTCTCTCCTCTCCTT
CCCACTCACGATTGTTCTTGGGCCGCCGCGGGGGGGCCGTCCCTTCCACC
ACCGTCCCTTCCACCACCGTTCCTGCAGCGGCTGCAGGTCGCGTGACGAC
GACAGCAGCTGCTGCCACGGGCACTTCTTCCTCTTCTTCCTCGCCTCCTA
CGGCCATCAAACTGGGGTCAGCCTCGACGCGAGAGGTCGAGCTGTTCGAG
ATGCTGATGGGCTTGGGGCAAGACCACCTCTTCCAAAACTGGCCGGCCGC
AGGGGAGGCAGAGGATGCAAAACACGCTTTCTTTCAGCAGGTGCAGCAGT
TAGATGAGAGCTACCCAGGTGGTGTTGTAGCTTATGTCAAGAAAGCTCGG
GCCTTGCTAGGGGCTGCTGTGAGGCAGGAAAACCCTTTTGAGGGTGTGAC
ACCCTCTGTACCTGACGGGGAGACACTAGCGTACGGGACGGCCGAATTTG
CCGCGGCGGAAGAAAGGGGATTGGACGAGGTGGCACATGCGGTCTTTGTC
TTGGTGGCGGGTGGATTAGGAGAGCGTTTAGGGTATGGAGGGATCAAACT
TGCGTTGCCTGTTGAGTCGACGACGGGGGAGACGTACCTGGAGTTTTATG
CGAGTTATATTTTGGCGTTGCAGGCACGCGCTCGGCAACGGACTGGCGAT
GCATCTTTGATCTTGCCTTTAGCCATTATGACTTCCGATGACACAGACGC
GCAGACCCGGGAGTTGTTGCTGCGCAATGGCAATTTCGGGATGGCAGAGG
GGCAGGTGGTGATTGTCAAGCAGAGCAAGGTCCCGGCCTTGCAAGACTCG
GAGGCCCGCCTGACCTTGGCTGATCCTTATACCCTCGACACCAAACCGCA
CGGACACGGTGACGTCCACCATCTCTTGCTCCGTAGCGGTCTGACCGCGC
AGTGGCTAGCTGAAGGCCGCAAATGGGTATTTTTTATGCAGGATACCAAT
GCCCTGGTCGTTAATTCCATCCTCCCTGCCCTGGCCGTGAGCGCCACCAA
GGGGTACGACATGAATAGCATCTGTATCCCCCGTAAGGCTGGGGAGGCTT
CCGGCGCCATCACCAAGCTGACCAGCCGGTCGGGTGACGCTATAATTATC
AATGTGGAATACAACCAGCTCGACCCCCTGTTACGTGCCACCACCTTCCC
GGAAGGCGATACCAATGACCCTTCCTCAGGCTGCTCCCCATTCCCTGGCA
ACGCCAATAATATCGTCATGTCCCTCCCTTCCTACCACCGCGTCCTCCAA
GGAGTCGACCAAGGAGTCGTCGAAGAATTCGTCAATCCCAAATTTAAAGA
TAGCACCCGCACGGCATTCACCAAACCCACCCGGCTCGAATGCATGATGC
AAGACTTTCCCAAGCTCCTGGCAAAGGAAATGGGGTCCACAGCCAGGGTT
GGATTCACGAGCTTCGAAAAATGGCTCTCGTTCTCCCCGGCCAAAAACAG
TCTGGATGCCGGGGCCAAGGCATACGCAGCTACAGGTGTGCCCCCCGCGA
CGGCCTCCAGTGCGGAGATGGACTTTTACCGGTCGCATTTGCTTAAACTG
CGCGCAGCCTTGTCAGCTTCCGCTGCTGCAGATGGTCTGAAATACGGCCA
GGTGGAGACGTTCGCTGATATTCCTTTGGAGACTGGACCTCGGGTTGTGT
TGACCCCTGCGCTGGCAGTGACAACCCGGGAGTTGCAGGAGAAGTTTGGC
GGGAGGATAAGAGTGTCAGGAAGGAGCACGCTGGTATTGGACGGTAAGGG
TATTCGTATTGAAGCGCTGGATTTGGACGGGACCTTGGTTGTGAAGGCGG
GGCCGAGGGCGAAGGTAGTTGTGAAGGATGCGGTGGTGAGGAATGAGGGG
TGGAAATTGGTGGCGACGGGAGAGGAGGCGGTGGAAGAGGAAAGAATCAG
AGGCTTTCTTATTGAGAAGGAGGGAGGGGTTGTGATTGACTTGGGGGAGG
CGGAGGGGGATTTTGTGGTGACGGGAAATGGGGAAGTAGTGAAACAGTGA
back to topCoding sequence (CDS) from alignment at chr2:825548..827797+ >NO02G03080.1 ID=NO02G03080.1|Name=NO02G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at chr2:825548..827797+ (Nannochloropsis oceanica)
ATGCCATTGGACTTGTCGTCAAGAAGACAGGGGCAGCCGCTGCCCTATCT
ACTGCTGGCCACCGCTGTCGTCATCGTCTCCTCTTCTCCGACTGTCGTGC
TGGCCTCCACAGCATCATCACCATCACGACATTGTTGGGGCACCACAGTC
CTGCGGCAGAACATATATAGTCATGGGGGATTTGTTTTCCCATCAAAACT
GCTCAGAGAATCACGTCCGGCAGGCACGATTGTCTCTCTCTCCTCTCCTT
CCCACTCACGATTGTTCTTGGGCCGCCGCGGGGGGGCCGTCCCTTCCACC
ACCGTCCCTTCCACCACCGTTCCTGCAGCGGCTGCAGGTCGCGTGACGAC
GACAGCAGCTGCTGCCACGGGCACTTCTTCCTCTTCTTCCTCGCCTCCTA
CGGCCATCAAACTGGGGTCAGCCTCGACGCGAGAGGTCGAGCTGTTCGAG
ATGCTGATGGGCTTGGGGCAAGACCACCTCTTCCAAAACTGGCCGGCCGC
AGGGGAGGCAGAGGATGCAAAACACGCTTTCTTTCAGCAGGTGCAGCAGT
TAGATGAGAGCTACCCAGGTGGTGTTGTAGCTTATGTCAAGAAAGCTCGG
GCCTTGCTAGGGGCTGCTGTGAGGCAGGAAAACCCTTTTGAGGGTGTGAC
ACCCTCTGTACCTGACGGGGAGACACTAGCGTACGGGACGGCCGAATTTG
CCGCGGCGGAAGAAAGGGGATTGGACGAGGTGGCACATGCGGTCTTTGTC
TTGGTGGCGGGTGGATTAGGAGAGCGTTTAGGGTATGGAGGGATCAAACT
TGCGTTGCCTGTTGAGTCGACGACGGGGGAGACGTACCTGGAGTTTTATG
CGAGTTATATTTTGGCGTTGCAGGCACGCGCTCGGCAACGGACTGGCGAT
GCATCTTTGATCTTGCCTTTAGCCATTATGACTTCCGATGACACAGACGC
GCAGACCCGGGAGTTGTTGCTGCGCAATGGCAATTTCGGGATGGCAGAGG
GGCAGGTGGTGATTGTCAAGCAGAGCAAGGTCCCGGCCTTGCAAGACTCG
GAGGCCCGCCTGACCTTGGCTGATCCTTATACCCTCGACACCAAACCGCA
CGGACACGGTGACGTCCACCATCTCTTGCTCCGTAGCGGTCTGACCGCGC
AGTGGCTAGCTGAAGGCCGCAAATGGGTATTTTTTATGCAGGATACCAAT
GCCCTGGTCGTTAATTCCATCCTCCCTGCCCTGGCCGTGAGCGCCACCAA
GGGGTACGACATGAATAGCATCTGTATCCCCCGTAAGGCTGGGGAGGCTT
CCGGCGCCATCACCAAGCTGACCAGCCGGTCGGGTGACGCTATAATTATC
AATGTGGAATACAACCAGCTCGACCCCCTGTTACGTGCCACCACCTTCCC
GGAAGGCGATACCAATGACCCTTCCTCAGGCTGCTCCCCATTCCCTGGCA
ACGCCAATAATATCGTCATGTCCCTCCCTTCCTACCACCGCGTCCTCCAA
GGAGTCGACCAAGGAGTCGTCGAAGAATTCGTCAATCCCAAATTTAAAGA
TAGCACCCGCACGGCATTCACCAAACCCACCCGGCTCGAATGCATGATGC
AAGACTTTCCCAAGCTCCTGGCAAAGGAAATGGGGTCCACAGCCAGGGTT
GGATTCACGAGCTTCGAAAAATGGCTCTCGTTCTCCCCGGCCAAAAACAG
TCTGGATGCCGGGGCCAAGGCATACGCAGCTACAGGTGTGCCCCCCGCGA
CGGCCTCCAGTGCGGAGATGGACTTTTACCGGTCGCATTTGCTTAAACTG
CGCGCAGCCTTGTCAGCTTCCGCTGCTGCAGATGGTCTGAAATACGGCCA
GGTGGAGACGTTCGCTGATATTCCTTTGGAGACTGGACCTCGGGTTGTGT
TGACCCCTGCGCTGGCAGTGACAACCCGGGAGTTGCAGGAGAAGTTTGGC
GGGAGGATAAGAGTGTCAGGAAGGAGCACGCTGGTATTGGACGGTAAGGG
TATTCGTATTGAAGCGCTGGATTTGGACGGGACCTTGGTTGTGAAGGCGG
GGCCGAGGGCGAAGGTAGTTGTGAAGGATGCGGTGGTGAGGAATGAGGGG
TGGAAATTGGTGGCGACGGGAGAGGAGGCGGTGGAAGAGGAAAGAATCAG
AGGCTTTCTTATTGAGAAGGAGGGAGGGGTTGTGATTGACTTGGGGGAGG
CGGAGGGGGATTTTGTGGTGACGGGAAATGGGGAAGTAGTGAAACAGTGA back to top
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