NO02G02990.1, NO02G02990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02990.1
Unique NameNO02G02990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr2:803282..805283 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:803282..805283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02990.1 vs.
Match: XP_005854032.1 (phosphatidylinositide phosphatase sac1 [Nannochloropsis gaditana CCMP526]; EKU22332.1 phosphatidylinositide phosphatase sac1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 678.3 bits (1749), Expect = 1.600e-191
Identity = 327/438 (74.66%), Postives = 373/438 (85.16%), Query Frame = 0 
Query:    1 MRAFLHHKRRPLALFQAKARWLSTATGPGETTAPAASSTSSSSTNAPPTTRVFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHNPWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLRPKLVEALKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQPRPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGLGGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGMKVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCLGHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVITD 439
            MRA L  + R LA+ QAK R +       ++T  +  S +SS T  P +TRVF WGQGTEGQLGH PIQKS +TGAY+ELSPRELR +  +D+Q  ++HNPWGFVDLA GLNYSAGVT DG+LYTWG+G+ HKLGHGD KPV RP+ VEAL+D++IVKVACGDFHTAA+D +G+LWTWGWGGSLFGGIGGLGHGDE EQPRPK+V+ L+DYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDH VPEPV+ FDEKT+IVEVAAGHAFNLVLT++G++FTWGRNEQGQLGLGGGISMDVYSMEAVPL++EAL+ KK+  +AAGHSHSAAVTE GELYMWGMK++LEP   +VGE   +KV  + CGGSHTAVVTE +  L TFGKGSSLCLGHG +SYTPHPKLVADGL GR VVKVA GHRHM VITD
Sbjct:  587 MRALLQQRCRRLAVAQAKLRGVPAVARVRQSTTFSTLSATSSHTIVP-STRVFAWGQGTEGQLGHSPIQKSALTGAYVELSPRELRLDTEQDQQKIEKHNPWGFVDLAAGLNYSAGVTEDGKLYTWGDGSNHKLGHGDSKPVYRPRQVEALQDVKIVKVACGDFHTAAIDEDGRLWTWGWGGSLFGGIGGLGHGDEAEQPRPKVVRSLVDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHGVPEPVELFDEKTNIVEVAAGHAFNLVLTQDGKIFTWGRNEQGQLGLGGGISMDVYSMEAVPLLVEALESKKVVHVAAGHSHSAAVTEEGELYMWGMKIHLEPQVFRVGEG--DKVWQVGCGGSHTAVVTEDAHQLFTFGKGSSLCLGHGTRSYTPHPKLVADGLAGRGVVKVACGHRHMAVITD 1021
The following BLAST results are available for this feature:
BLAST of NO02G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854032.11.600e-19174.66phosphatidylinositide phosphatase sac1 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02990NO02G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02990.1NO02G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02990.1.cds1NO02G02990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02990.1.cds2NO02G02990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02990.1.cds3NO02G02990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02990.1.cds4NO02G02990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02990.1.cds5NO02G02990.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02990.1 ID=NO02G02990.1|Name=NO02G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
ATGCGGGCCTTTCTACATCACAAACGTCGGCCGCTGGCGCTCTTCCAGGC
AAAGGCACGATGGCTGTCAACAGCTACAGGTCCAGGTGAGACGACGGCAC
CTGCAGCTTCCTCCACATCCTCGTCCTCCACCAACGCTCCTCCCACGACA
CGAGTCTTCACTTGGGGCCAAGGGACTGAGGGGCAGCTTGGACACTTTCC
CATCCAAAAAAGTGGCATCACAGGTGCTTACATCGAGCTGTCACCACGAG
AGTTGCGCAAGGAAGGCAGCAAAGACGAGCAAGTAAAGAAGCAGCACAAC
CCCTGGGGGTTCGTGGATCTGGCGATGGGACTTAATTACTCTGCAGGTGT
GACGGCAGATGGGAGGCTCTACACGTGGGGGGAAGGTAACTATCACAAGC
TCGGCCACGGTGATGTAAAGCCAGTGCTTCGACCTAAGTTGGTGGAGGCG
CTCAAGGACATCCAAATTGTCAAGGTGGCCTGCGGCGATTTCCACACAGC
AGCAGTTGACGCCGAGGGGCAACTCTGGACCTGGGGCTGGGGGGGCTCCC
TTTTCGGGGGAATTGGCGGGTTAGGGCATGGCGACGAGATTGAGCAACCG
CGCCCGAAACTGGTGAAGGGCCTGTTGGACTACGGGTGTCGAGTGGGTAG
TGTGGCATGCGGGGAGAAGCACACATTGATTCTGACGGATGATGGGGAGG
TGCTGACGGCGGGGAATGGAGAGTACGGACGGCTGGGCAACGGAGGGAGC
AGTGATCACCCCGTGCCGGAGCCGGTGGACTTTTTTGACGAGAAGACGGA
CATAGTGGAAGTAGCGGCGGGGCATGCCTTCAACTTGGTGTTGACGCGAG
AGGGGAGGGTTTTCACTTGGGGCCGAAACGAGCAAGGCCAGCTCGGCCTC
GGCGGGGGCATCAGCATGGACGTCTACTCAATGGAAGCTGTCCCTCTTAT
TATCGAGGCGCTGCAAGACAAGAAGATCGCCCGCATCGCCGCCGGGCACT
CCCACTCCGCCGCCGTCACCGAGGCCGGCGAGCTGTACATGTGGGGAATG
AAGGTCTACCTCGAGCCCCACCACATCAAGGTCGGCGAGACAGGGATGGA
AAAAGTAAGCCTGCTGAGCTGTGGAGGAAGCCATACGGCTGTTGTGACAG
AAGGGTCGGGGCACTTGCACACGTTTGGGAAGGGCTCGTCGCTTTGCTTG
GGGCACGGGGGGAAGAGCTACACGCCGCACCCGAAGCTCGTGGCCGATGG
CTTGGGGGGACGAACCGTGGTGAAGGTGGCGAGTGGCCATAGGCATATGG
GGGTGATAACAGACTAG
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protein sequence of NO02G02990.1

>NO02G02990.1-protein ID=NO02G02990.1-protein|Name=NO02G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MRAFLHHKRRPLALFQAKARWLSTATGPGETTAPAASSTSSSSTNAPPTT
RVFTWGQGTEGQLGHFPIQKSGITGAYIELSPRELRKEGSKDEQVKKQHN
PWGFVDLAMGLNYSAGVTADGRLYTWGEGNYHKLGHGDVKPVLRPKLVEA
LKDIQIVKVACGDFHTAAVDAEGQLWTWGWGGSLFGGIGGLGHGDEIEQP
RPKLVKGLLDYGCRVGSVACGEKHTLILTDDGEVLTAGNGEYGRLGNGGS
SDHPVPEPVDFFDEKTDIVEVAAGHAFNLVLTREGRVFTWGRNEQGQLGL
GGGISMDVYSMEAVPLIIEALQDKKIARIAAGHSHSAAVTEAGELYMWGM
KVYLEPHHIKVGETGMEKVSLLSCGGSHTAVVTEGSGHLHTFGKGSSLCL
GHGGKSYTPHPKLVADGLGGRTVVKVASGHRHMGVITD*
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mRNA from alignment at chr2:803282..805283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02990.1 ID=NO02G02990.1|Name=NO02G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp|location=Sequence derived from alignment at chr2:803282..805283- (Nannochloropsis oceanica)
ATGCGGGCCTTTCTACATCACAAACGTCGGCCGCTGGCGCTCTTCCAGGT
ATCAAGGAGAAGAAGGGGGAGGACAAAGGTTCCACGGTGGGGATGAAGAT
TAAAGATAAAGCAAAGATCACGCCACTAGCCCATGCAAATATCTAGAAGG
CGTAAGATTACCTATTGACATCACACCCGCATCACCCGCATCACAGGCAA
AGGCACGATGGCTGTCAACAGCTACAGGTCCAGGTGAGACGACGGCACCT
GCAGCTTCCTCCACATCCTCGTCCTCCACCAACGCTCCTCCCACGACACG
AGTCTTCACTTGGGGCCAAGGGACTGAGGGGCAGCTTGGACACTTTCCCA
TCCAAAAAAGTGGCATCACAGGTGCTTACATCGAGCTGTCACCACGAGAG
TTGCGCAAGGAAGGCAGCAAAGACGAGCAAGTAAAGAAGCAGCACAACCC
CTGGGGGTTCGTGGATCTGGCGATGGGACTTAATTACTCTGCAGGTGTGA
CGGCAGATGGGAGGCTCTACACGTGGGGGGAAGGTAACTATCACAAGCTC
GGCCACGGTGATGTAAAGCCAGTGCTTCGACCTAAGTTGGTGGAGGCGCT
CAAGGACATCCAAATTGTCAAGGTGGCCTGCGGGTACGTGCTGTGTGATG
AAGTGTGGGGTGGCGGGATGGTGACGGTAAGACAGAGGAATACCTGAATG
TTATTTTTCCTTGCCCGTGTACTATATACCATGGATGAGGATGACTTTGT
TCCTGTCAGCATGACTTGTCGTCCTTCATTTTCCATTCTTCCCCCACCCC
AACCTGCTCCCCGCTTCCCTCCTGCCAGCGATTTCCACACAGCAGCAGTT
GACGCCGAGGGGCAACTCTGGACCTGGGGCTGGGGGGGCTCCCTTTTCGG
GGGAATTGGCGGGTTAGGGCATGGCGACGAGATTGAGCAACCGCGCCCGA
AACTGGTGAAGGGCCTGTTGGACTACGGGTGTCGAGTGGGTAGTGTGGCA
TGCGGGGAGAAGCACACATTGATTCTGACGGATGATGGGGAGGTGCTGAC
GGCGGGGAATGGAGAGTACGGACGGCTGGGCAACGGAGGGAGCAGTGATC
ACCCCGTGCCGGAGCCGGTGGACTTTTTTGACGAGAAGTGAGTTAAGGGA
TGGAGAGGAAGAGAGAGGGGGGTGAAGGAGATGTCTCACGGGGGGAATGA
TATATATAACTTTCGAAGTACCCTTCATTATATGTATTCAGTGAATAATC
ATTTTTGAATTTATAGATATTCTCATTTCTTAACACGCTCTTTCCAAACA
TAGGACGGACATAGTGGAAGTAGCGGCGGGGCATGCCTTCAACTTGGTGT
TGACGCGAGAGGGGAGGGTTTTCACTTGGGGCCGAAACGAGCAAGGCCAG
GTGGGAACGATGGGACGGAGGCGAGCAGGGAAAATGCAGATCTGCGGGGT
GTTCAAAGACGAAGTAGACAAGCGTCGTATACTTATGGTTGAGTCTTGCA
CTTAATTTAAAAATCCTAAGACCTCACTCGTCTCCCTCTTCCTTTATCTC
TTTCCCAAAAAAAACTCGCCTACCAGCTCGGCCTCGGCGGGGGCATCAGC
ATGGACGTCTACTCAATGGAAGCTGTCCCTCTTATTATCGAGGCGCTGCA
AGACAAGAAGATCGCCCGCATCGCCGCCGGGCACTCCCACTCCGCCGCCG
TCACCGAGGCCGGCGAGCTGTACATGTGGGGAATGAAGGTCTACCTCGAG
CCCCACCACATCAAGGTCGGCGAGACAGGGATGGAAAAAGTAAGCCTGCT
GAGCTGTGGAGGAAGCCATACGGCTGTTGTGACAGAAGGGTCGGGGCACT
TGCACACGTTTGGGAAGGGCTCGTCGCTTTGCTTGGGGCACGGGGGGAAG
AGCTACACGCCGCACCCGAAGCTCGTGGCCGATGGCTTGGGGGGACGAAC
CGTGGTGAAGGTGGCGAGTGGCCATAGGCATATGGGGGTGATAACAGACT
AG
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Coding sequence (CDS) from alignment at chr2:803282..805283-

>NO02G02990.1 ID=NO02G02990.1|Name=NO02G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr2:803282..805283- (Nannochloropsis oceanica)
ATGCGGGCCTTTCTACATCACAAACGTCGGCCGCTGGCGCTCTTCCAGGC
AAAGGCACGATGGCTGTCAACAGCTACAGGTCCAGGTGAGACGACGGCAC
CTGCAGCTTCCTCCACATCCTCGTCCTCCACCAACGCTCCTCCCACGACA
CGAGTCTTCACTTGGGGCCAAGGGACTGAGGGGCAGCTTGGACACTTTCC
CATCCAAAAAAGTGGCATCACAGGTGCTTACATCGAGCTGTCACCACGAG
AGTTGCGCAAGGAAGGCAGCAAAGACGAGCAAGTAAAGAAGCAGCACAAC
CCCTGGGGGTTCGTGGATCTGGCGATGGGACTTAATTACTCTGCAGGTGT
GACGGCAGATGGGAGGCTCTACACGTGGGGGGAAGGTAACTATCACAAGC
TCGGCCACGGTGATGTAAAGCCAGTGCTTCGACCTAAGTTGGTGGAGGCG
CTCAAGGACATCCAAATTGTCAAGGTGGCCTGCGGCGATTTCCACACAGC
AGCAGTTGACGCCGAGGGGCAACTCTGGACCTGGGGCTGGGGGGGCTCCC
TTTTCGGGGGAATTGGCGGGTTAGGGCATGGCGACGAGATTGAGCAACCG
CGCCCGAAACTGGTGAAGGGCCTGTTGGACTACGGGTGTCGAGTGGGTAG
TGTGGCATGCGGGGAGAAGCACACATTGATTCTGACGGATGATGGGGAGG
TGCTGACGGCGGGGAATGGAGAGTACGGACGGCTGGGCAACGGAGGGAGC
AGTGATCACCCCGTGCCGGAGCCGGTGGACTTTTTTGACGAGAAGACGGA
CATAGTGGAAGTAGCGGCGGGGCATGCCTTCAACTTGGTGTTGACGCGAG
AGGGGAGGGTTTTCACTTGGGGCCGAAACGAGCAAGGCCAGCTCGGCCTC
GGCGGGGGCATCAGCATGGACGTCTACTCAATGGAAGCTGTCCCTCTTAT
TATCGAGGCGCTGCAAGACAAGAAGATCGCCCGCATCGCCGCCGGGCACT
CCCACTCCGCCGCCGTCACCGAGGCCGGCGAGCTGTACATGTGGGGAATG
AAGGTCTACCTCGAGCCCCACCACATCAAGGTCGGCGAGACAGGGATGGA
AAAAGTAAGCCTGCTGAGCTGTGGAGGAAGCCATACGGCTGTTGTGACAG
AAGGGTCGGGGCACTTGCACACGTTTGGGAAGGGCTCGTCGCTTTGCTTG
GGGCACGGGGGGAAGAGCTACACGCCGCACCCGAAGCTCGTGGCCGATGG
CTTGGGGGGACGAACCGTGGTGAAGGTGGCGAGTGGCCATAGGCATATGG
GGGTGATAACAGACTAG
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Synonyms
Publications