NO02G02960.1, NO02G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02960.1
Unique NameNO02G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1031
Alignment locationchr2:795897..797495 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:795897..797495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02960.1 vs.
Match: XP_005853740.1 (rab18 -family small gtpase, partial [Nannochloropsis gaditana CCMP526]; EKU22621.1 rab18 -family small gtpase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 392.1 bits (1006), Expect = 1.100e-105
Identity = 190/205 (92.68%), Postives = 199/205 (97.07%), Query Frame = 0 
Query:    1 MREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVGQKKIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRDSFENLNHWLQEVEVYSTGGGREIIKVLVGNKVDKDRLVPREEAEAWARSKGMLFLEASAKTRTGIKQVFQEVVQKILDNPALLTNTAPGRPRVSLQADAGAKVGGGYCC 206
            +REPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEV  K+IKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRR+SFENLNHWLQEVEVYSTGGGREI+KVLVGNKVDK+R+VPREEAEAWARSKGMLFLEASAKTRTGI+QVF EVVQKILDNP+LLTNTAPGRPRV+LQADA AK  GGYCC
Sbjct:   40 VREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQADAAAKGSGGYCC 244
The following BLAST results are available for this feature:
BLAST of NO02G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853740.11.100e-10592.68rab18 -family small gtpase, partial [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02960NO02G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02960.1NO02G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02960.1.cds1NO02G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02960.1.cds2NO02G02960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02960.1.cds3NO02G02960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02960.1 ID=NO02G02960.1|Name=NO02G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
TTCAGAGTTCTATGCTATATCTGTGTTGTGTGTGGGAGAGGGCTGATGAC
AATGAGAATGATTGAAAAAAGTGTGCTTCAGAGCGAGCAGGAGCCTCAAT
GAGTGAGGCAGCCGGAGTCTTCATCTCATTCCATGCCGTACGCCCGTCCC
GTACGCTAAGCAGAAGCCGGCAGACTTTTCGCTCTCCTTCCTCAAGATAC
AAGATAGGATCAGAGCACCAAGGTGGCTGCGTCGGCTCTCCCTGTCTGTC
CTCGATCACTTCGCCCGCCCCAAATTTATCGCCTCCCTAGGTGCTTGCTT
CATCTATCTCCCGTGTCAGAAAGTCTACCCCTCCTCTTTCCGTCCGAACA
ACCCACAGGCGCAACCACTGACACGAACCAAGCTGCCATGCGCGAGCCAG
AGCCGTACGACCATCTTTTCAAGCTTCTGCTTATAGGTGACGCAGGCGTG
GGGAAGTCGAGCATCCTCCTCCGCTTCACGGACGACGCCTTCGACGACCA
CCAGCAGTCCACCATCGGGGTAGACTTTAAGGTGAAGATGATAGAGGTCG
GGCAAAAGAAGATCAAGATGACGATCTGGGACACGGCGGGGCAAGAACGG
TTTCGGACGTTGACCAGTTCGTACTATCGCGGGGCTCAGGGAATTATTCT
TGTATACGACGTGAATCGGCGGGACTCCTTCGAGAATCTCAACCACTGGT
TGCAAGAGGTGGAAGTTTATAGCACGGGCGGGGGTCGTGAAATCATCAAG
GTGCTGGTAGGAAACAAGGTAGATAAAGACAGGTTGGTGCCACGGGAGGA
AGCAGAGGCATGGGCACGGAGTAAAGGGATGCTGTTCCTGGAGGCCAGCG
CCAAGACAAGGACGGGGATCAAGCAGGTGTTCCAGGAGGTGGTGCAGAAG
ATTCTCGATAACCCGGCTCTCTTGACGAATACCGCCCCCGGGCGGCCACG
GGTTAGCTTGCAGGCAGATGCGGGGGCGAAGGTGGGGGGGGGTTACTGCT
GTTGATTTTGAGAACCACGGGAGGAGGGGGG
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protein sequence of NO02G02960.1

>NO02G02960.1-protein ID=NO02G02960.1-protein|Name=NO02G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVK
MIEVGQKKIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRDSFEN
LNHWLQEVEVYSTGGGREIIKVLVGNKVDKDRLVPREEAEAWARSKGMLF
LEASAKTRTGIKQVFQEVVQKILDNPALLTNTAPGRPRVSLQADAGAKVG
GGYCC*
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mRNA from alignment at chr2:795897..797495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02960.1 ID=NO02G02960.1|Name=NO02G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at chr2:795897..797495+ (Nannochloropsis oceanica)
TTCAGAGTTCTATGCTATATCTGTGTTGTGTGTGGGAGAGGGCTGATGAC
AATGAGAATGATTGAAAAAAGTGTGCTTCAGAGCGAGCAGGAGCCTCAAT
GAGTGAGGCAGCCGGAGTCTTCATCTCATTCCATGCCGTACGCCCGTCCC
GTACGCTAAGCAGAAGCCGGCAGACTTTTCGCTCTCCTTCCTCAAGATAC
AAGATAGGATCAGAGCACCAAGGTGGCTGCGTCGGCTCTCCCTGTCTGTC
CTCGATCACTTCGCCCGCCCCAAATTTATCGCCTCCCTAGGTGCTTGCTT
CATCTATCTCCCGTGTCAGAAAGTCTACCCCTCCTCTTTCCGTCCGAACA
ACCCACAGGCGCAACCACTGACACGAACCAAGCTGCCATGCGCGAGCCAG
AGCCGTACGACCATCTTTTCAAGCTTCTGCTTATAGGTGACGCAGGCGTG
GGGAAGTCGAGGTACGTCTTGAGGTCGTGGAGCGGGAAAGAGGGGCATGG
GAATGGGCAGTTTGAGAACGTCGTCTTGGGTAGGGGAACTCTGATTCGAG
GAAAGGAGGTGGTGGGCTTGCTGAATAACACCTTTCTGGCTGTAACACTG
ATATTTGGGGTAGGGGTAGGGGCCAGCAATATGGCCGAGAGTCGGAATGG
TCCTCAGGTGATGCTGCCGAGCGAGGCGCATATTCCGCGGAACGCAATCG
AAAGCCCAAAGCGCCGCACAAGAAGTAGCGCTTTCAAACCTCGAGGACGT
AAAAAGTTGATGGCTTTATCAGGCACTTGGGCTCACACACTCCCGTCTTC
CGTCCATCCCTCCCTCCCGTCCTTCAAACCCCGTGCTTACAGCATCCTCC
TCCGCTTCACGGACGACGCCTTCGACGACCACCAGCAGTCCACCATCGGG
GTAGACTTTAAGGTGAAGATGATAGAGGTCGGGCAAAAGAAGATCAAGAT
GACGATCTGGGACACGGCGGGGCAAGAACGGTTTCGGACGTTGACCAGTT
CGTACTATCGCGGGGCTCAGGGAATTATTCTTGGTAAGGTTTTGGAGGAA
GGAGGGAGGGAGGGAATAGGAAGATGGAGGGGGGGGGAGGTGAATGATTG
AGATGCAGATCAGGCGGATAATGAGGAGAGGTATGAGGGAATTAATTCGT
TTTTATGCAGGTTGCTGTTACTAATCTTGCTCCCTCCCTCTATCCCCTCC
CTTCCTCCCTCCCTCGTAAGTATACGACGTGAATCGGCGGGACTCCTTCG
AGAATCTCAACCACTGGTTGCAAGAGGTGGAAGTTTATAGCACGGGCGGG
GGTCGTGAAATCATCAAGGTGCTGGTAGGAAACAAGGTAGATAAAGACAG
GTTGGTGCCACGGGAGGAAGCAGAGGCATGGGCACGGAGTAAAGGGATGC
TGTTCCTGGAGGCCAGCGCCAAGACAAGGACGGGGATCAAGCAGGTGTTC
CAGGAGGTGGTGCAGAAGATTCTCGATAACCCGGCTCTCTTGACGAATAC
CGCCCCCGGGCGGCCACGGGTTAGCTTGCAGGCAGATGCGGGGGCGAAGG
TGGGGGGGGGTTACTGCTGTTGATTTTGAGAACCACGGGAGGAGGGGGG
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Coding sequence (CDS) from alignment at chr2:795897..797495+

>NO02G02960.1 ID=NO02G02960.1|Name=NO02G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr2:795897..797495+ (Nannochloropsis oceanica)
ATGCGCGAGCCAGAGCCGTACGACCATCTTTTCAAGCTTCTGCTTATAGG
TGACGCAGGCGTGGGGAAGTCGAGCATCCTCCTCCGCTTCACGGACGACG
CCTTCGACGACCACCAGCAGTCCACCATCGGGGTAGACTTTAAGGTGAAG
ATGATAGAGGTCGGGCAAAAGAAGATCAAGATGACGATCTGGGACACGGC
GGGGCAAGAACGGTTTCGGACGTTGACCAGTTCGTACTATCGCGGGGCTC
AGGGAATTATTCTTGTATACGACGTGAATCGGCGGGACTCCTTCGAGAAT
CTCAACCACTGGTTGCAAGAGGTGGAAGTTTATAGCACGGGCGGGGGTCG
TGAAATCATCAAGGTGCTGGTAGGAAACAAGGTAGATAAAGACAGGTTGG
TGCCACGGGAGGAAGCAGAGGCATGGGCACGGAGTAAAGGGATGCTGTTC
CTGGAGGCCAGCGCCAAGACAAGGACGGGGATCAAGCAGGTGTTCCAGGA
GGTGGTGCAGAAGATTCTCGATAACCCGGCTCTCTTGACGAATACCGCCC
CCGGGCGGCCACGGGTTAGCTTGCAGGCAGATGCGGGGGCGAAGGTGGGG
GGGGGTTACTGCTGTTGA
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Synonyms
Publications