NO02G02950.1, NO02G02950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02950.1
Unique NameNO02G02950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1906
Alignment locationchr2:793942..796274 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:793942..796274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02950.1 vs.
Match: XP_005853738.1 (mitochondrial-processing peptidase subunit beta [Nannochloropsis gaditana CCMP526]; EKU22619.1 mitochondrial-processing peptidase subunit beta [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 831.2 bits (2146), Expect = 1.600e-237
Identity = 426/486 (87.65%), Postives = 445/486 (91.56%), Query Frame = 0 
Query:    1 MKGRKELFQQLLRRRGAATASSGLILPPCVTASQGGRPLSALSGRSLEVIAPATEVTQLPSGLRVASE--TSHGETATVGVWIDAGSRYETAQNNGAAHFLEHMAFKGTNRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFKGDVERAMDILSDILQHSVFDERAVTRERDVILREMEEVNKQKEEVILDYLHETAFQGTGLGRTILGPEENVKSLHREALQDYIKTHYTAPRMVIAGAGAIKHGRLVDLAQQYFGNLPLQAPPGADTGMDAAVFVGSDKRVFLPKEEESEAHVALAFRGAAWTSEFAFPLMVLQTIMGCWDRTSGASRQTSGRLGQAVAEKELCHSYVTFNTCYKDIGLFGLYAVVPPEKLKDFTTAMCEHLVRMAHDVTPAEVEKAKTQLKCTLLMQLDSFAHVCEDIGRQMLTYDRRMTPAEIFARIDAVQAEDVKATALAYIIDEDHALAAIGPVGGLPDYDWIRRQCL 485
            MK  K + Q L RRR AA  SS L+LP      +G R LSA  GRSLEV  PATEVT+L SGLRVASE  TSHGETATVGVWIDAGSRYETA NNGAAHFLEHMAFKGT RRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVF+GDVERAMDILSDILQHSVFDERAV RERDVILREMEEVNKQKEEVILDYLHETAFQGTGLGRTILGPEENVKSLHREAL+DYI+THYTAPRMVIAGAGAI+HGRLV+LA +YFGNLP QAPPGADTGM+AAVFVGSDKRV    EEESEAHVALAFRGAAWTSEFAFPLMVLQTIMGCWDR+SGASRQ +GRLGQAV E+ELCHSYVTFNTCYKD+GLFGLYAVVPPEKL+DF+ AM EHLVRMAHDVTPAEVEKAKTQLKCTLLMQLDSFAHVCEDIGRQMLTY RRMTPAEIFARIDAVQAEDVKATA+AYI+DEDHALAAIGPV  LPDYDWIRRQCL
Sbjct:    1 MKCSKNVLQMLSRRRSAA--SSSLVLPG--PGIKGERFLSAYKGRSLEVNTPATEVTKLSSGLRVASEMQTSHGETATVGVWIDAGSRYETALNNGAAHFLEHMAFKGTQRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFRGDVERAMDILSDILQHSVFDERAVMRERDVILREMEEVNKQKEEVILDYLHETAFQGTGLGRTILGPEENVKSLHREALKDYIRTHYTAPRMVIAGAGAIEHGRLVELADKYFGNLPRQAPPGADTGMEAAVFVGSDKRVH--SEEESEAHVALAFRGAAWTSEFAFPLMVLQTIMGCWDRSSGASRQMTGRLGQAVMERELCHSYVTFNTCYKDMGLFGLYAVVPPEKLRDFSGAMTEHLVRMAHDVTPAEVEKAKTQLKCTLLMQLDSFAHVCEDIGRQMLTYGRRMTPAEIFARIDAVQAEDVKATAMAYIVDEDHALAAIGPVANLPDYDWIRRQCL 480
The following BLAST results are available for this feature:
BLAST of NO02G02950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853738.11.600e-23787.65mitochondrial-processing peptidase subunit beta [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02950NO02G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02950.1NO02G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02950.1.cds1NO02G02950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02950.1.cds2NO02G02950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02950.1.cds3NO02G02950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02950.1 ID=NO02G02950.1|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp
GTTCGTGTCAGTGGTTGCGCCTGTGGGTTGTTCGGACGGAAAGAGGAGGG
GTAGACTTTCTGACACGGGAGATAGATGAAGCAAGCACCTAGGGAGGCGA
TAAATTTGGGGCGGGCGAAGTGATCGAGGACAGACAGGGAGAGCCGACGC
AGCCACCTTGGTGCTCTGATCCTATCTTGTATCTTGAGGAAGGAGAGCGA
AAAGTCTGCCGGCTTCTGCTTAGCGTACGGGACGGGCGTACGGCATGGAA
TGAGATGAAGACTCCGGCTGCCTCACTCATTGAGGCTCCTGCTCGCTCTG
AAGCACACTTTTTTCAATCATTCTCATTGTCATCAGCCCTCTCCCACACA
CAACACAGATATAGCATAGAACTCTGAAGCAATGAAGGGCAGGAAGGAGC
TTTTCCAGCAGCTCCTGCGCCGGAGGGGGGCAGCAACGGCCTCTTCAGGT
CTCATCTTGCCACCTTGTGTGACAGCTTCTCAGGGCGGACGCCCCCTTTC
GGCCTTGTCGGGCAGGAGTCTGGAGGTGATTGCGCCTGCTACCGAAGTCA
CGCAACTACCAAGCGGCCTGCGCGTCGCATCCGAGACCTCCCACGGCGAA
ACCGCCACAGTCGGCGTCTGGATCGACGCCGGCAGCCGGTACGAAACGGC
ACAAAACAACGGTGCAGCCCACTTTCTCGAGCACATGGCTTTTAAAGGCA
CGAACCGTCGGGCGCAGTATGATATTGAGGTGGAGATTGAAAACATGGGG
GGGCATTTAAATGCTTATACCTCACGGGAACAGACCGTGTATTACGCAAA
GGTATTCAAAGGGGACGTCGAGAGGGCGATGGATATTCTGAGTGACATTT
TGCAGCATTCAGTATTCGATGAACGGGCCGTCACGCGGGAGAGGGACGTG
ATCTTGAGGGAGATGGAGGAAGTGAACAAGCAGAAGGAAGAGGTCATCTT
GGATTACTTGCACGAGACAGCATTTCAGGGTACAGGGTTGGGGAGAACAA
TTCTGGGACCGGAGGAGAATGTGAAGAGCCTGCATAGGGAAGCATTGCAG
GACTATATCAAAACGCACTATACGGCACCTCGGATGGTGATTGCTGGGGC
GGGGGCGATTAAGCATGGAAGATTGGTGGATTTGGCGCAGCAGTATTTTG
GGAATTTACCGCTGCAGGCGCCTCCCGGGGCGGATACGGGGATGGATGCT
GCTGTGTTTGTGGGGAGTGACAAAAGAGTGTTTTTACCGAAGGAGGAGGA
GAGCGAGGCGCACGTAGCGTTGGCGTTTCGGGGGGCGGCATGGACGTCGG
AGTTCGCTTTTCCTTTGATGGTGTTGCAGACGATTATGGGGTGTTGGGAC
AGGACGAGCGGGGCGAGTCGGCAGACGAGCGGAAGGCTAGGCCAGGCGGT
GGCGGAAAAGGAGTTGTGTCATTCGTATGTAACGTTTAATACGTGCTATA
AGGATATCGGGTTATTTGGCCTCTATGCCGTGGTGCCACCGGAGAAGTTA
AAGGACTTCACGACTGCCATGTGCGAGCATCTGGTGCGGATGGCCCATGA
TGTCACTCCCGCGGAGGTGGAGAAGGCAAAGACACAATTAAAGTGTACAT
TGCTGATGCAGTTGGACTCGTTTGCGCATGTGTGTGAGGATATTGGGCGG
CAGATGCTGACGTATGACAGACGGATGACGCCTGCGGAGATTTTTGCGAG
GATTGATGCAGTGCAGGCGGAGGATGTGAAAGCTACAGCGCTGGCTTACA
TTATAGATGAGGACCATGCCTTGGCGGCGATAGGCCCTGTGGGCGGGTTG
CCGGACTATGATTGGATTAGGCGGCAGTGTTTGTAACGTCAGGTAGGGAG
AAGGGAGGGGGGAAGAAGAAATATCAAGAAAAACAAGAAATGACGATGCT
TCCGAA
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protein sequence of NO02G02950.1

>NO02G02950.1-protein ID=NO02G02950.1-protein|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MKGRKELFQQLLRRRGAATASSGLILPPCVTASQGGRPLSALSGRSLEVI
APATEVTQLPSGLRVASETSHGETATVGVWIDAGSRYETAQNNGAAHFLE
HMAFKGTNRRAQYDIEVEIENMGGHLNAYTSREQTVYYAKVFKGDVERAM
DILSDILQHSVFDERAVTRERDVILREMEEVNKQKEEVILDYLHETAFQG
TGLGRTILGPEENVKSLHREALQDYIKTHYTAPRMVIAGAGAIKHGRLVD
LAQQYFGNLPLQAPPGADTGMDAAVFVGSDKRVFLPKEEESEAHVALAFR
GAAWTSEFAFPLMVLQTIMGCWDRTSGASRQTSGRLGQAVAEKELCHSYV
TFNTCYKDIGLFGLYAVVPPEKLKDFTTAMCEHLVRMAHDVTPAEVEKAK
TQLKCTLLMQLDSFAHVCEDIGRQMLTYDRRMTPAEIFARIDAVQAEDVK
ATALAYIIDEDHALAAIGPVGGLPDYDWIRRQCL*
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mRNA from alignment at chr2:793942..796274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02950.1 ID=NO02G02950.1|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at chr2:793942..796274- (Nannochloropsis oceanica)
GTTCGTGTCAGTGGTTGCGCCTGTGGGTTGTTCGGACGGAAAGAGGAGGG
GTAGACTTTCTGACACGGGAGATAGATGAAGCAAGCACCTAGGGAGGCGA
TAAATTTGGGGCGGGCGAAGTGATCGAGGACAGACAGGGAGAGCCGACGC
AGCCACCTTGGTGCTCTGATCCTATCTTGTATCTTGAGGAAGGAGAGCGA
AAAGTCTGCCGGCTTCTGCTTAGCGTACGGGACGGGCGTACGGCATGGAA
TGAGATGAAGACTCCGGCTGCCTCACTCATTGAGGCTCCTGCTCGCTCTG
AAGCACACTTTTTTCAATCATTCTCATTGTCATCAGCCCTCTCCCACACA
CAACACAGATATAGCATAGAACTCTGAAGCAATGAAGGGCAGGAAGGAGC
TTTTCCAGCAGCTCCTGCGCCGGAGGGGGGCAGCAACGGCCTCTTCAGGT
CTCATCTTGCCACCTTGTGTGACAGCTTCTCAGGTACGTGGGGAAACCAG
GGCATAGTATCCACCGCTATTCCCACCGCGGCGTCTATCTTTACACGTCC
CTGACACACATTTGTCCACATTGCCATCACACACACATGATATAGGGCGG
ACGCCCCCTTTCGGCCTTGTCGGGCAGGAGTCTGGAGGTGATTGCGCCTG
CTACCGAAGTCACGCAACTACCAAGCGGCCTGCGCGTCGCATCCGAGGTA
CGTAAGACTAGAGGATGCGACAATGTGTGCGTTTGGAGTGGGGAGAGGTG
GCCGCCTCTAATGCTTCAATCCTGTGTACCTTCAATATACATGCGCTTTC
ACCTCGGGTGTGGCGCTCACCTGGATGGGGGAAAGCCAAAAAGGCATGCC
GAGGCAGGTCAACGCAAGGCGCATTCCGCTCTGTGTAAAGCGCGCCTGCA
CGTGTATCTCATACTATTAAAAGCGCGGCCAGCTGATAAACTCTGACATA
TAATTTGGTGTATGCATCTATCTTATACCCTGTCCCACACCCTTTTACAC
CACCTCAAACAGACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGAT
CGACGCCGGCAGCCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACT
TTCTCGAGCACATGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGAT
ATTGAGGTGGAGATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTC
ACGGGAACAGACCGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGA
GGGCGATGGATATTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAA
CGGGCCGTCACGCGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGT
GAACAAGCAGAAGGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCAT
TTCAGGGTACAGGGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTG
AAGAGCCTGCATAGGGAAGCATTGCAGGACTATATCAAAACGCACTATAC
GGCACCTCGGATGGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGAT
TGGTGGATTTGGCGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCT
CCCGGGGCGGATACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAA
AAGAGTGTTTTTACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGG
CGTTTCGGGGGGCGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTG
TTGCAGACGATTATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCA
GACGAGCGGAAGGCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATT
CGTATGTAACGTTTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTC
TATGCCGTGGTGCCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTG
CGAGCATCTGGTGCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGA
AGGCAAAGACACAATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTT
GCGCATGTGTGTGAGGATATTGGGCGGCAGATGCTGACGTATGACAGACG
GATGACGCCTGCGGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGG
ATGTGAAAGCTACAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTG
GCGGCGATAGGCCCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCG
GCAGTGTTTGTAACGTCAGGTAGGGAGAAGGGAGGGGGGAAGAAGAAATA
TCAAGAAAAACAAGAAATGACGATGCTTCCGAA
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Coding sequence (CDS) from alignment at chr2:793942..796274-

>NO02G02950.1 ID=NO02G02950.1|Name=NO02G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr2:793942..796274- (Nannochloropsis oceanica)
ATGAAGGGCAGGAAGGAGCTTTTCCAGCAGCTCCTGCGCCGGAGGGGGGC
AGCAACGGCCTCTTCAGGTCTCATCTTGCCACCTTGTGTGACAGCTTCTC
AGGGCGGACGCCCCCTTTCGGCCTTGTCGGGCAGGAGTCTGGAGGTGATT
GCGCCTGCTACCGAAGTCACGCAACTACCAAGCGGCCTGCGCGTCGCATC
CGAGACCTCCCACGGCGAAACCGCCACAGTCGGCGTCTGGATCGACGCCG
GCAGCCGGTACGAAACGGCACAAAACAACGGTGCAGCCCACTTTCTCGAG
CACATGGCTTTTAAAGGCACGAACCGTCGGGCGCAGTATGATATTGAGGT
GGAGATTGAAAACATGGGGGGGCATTTAAATGCTTATACCTCACGGGAAC
AGACCGTGTATTACGCAAAGGTATTCAAAGGGGACGTCGAGAGGGCGATG
GATATTCTGAGTGACATTTTGCAGCATTCAGTATTCGATGAACGGGCCGT
CACGCGGGAGAGGGACGTGATCTTGAGGGAGATGGAGGAAGTGAACAAGC
AGAAGGAAGAGGTCATCTTGGATTACTTGCACGAGACAGCATTTCAGGGT
ACAGGGTTGGGGAGAACAATTCTGGGACCGGAGGAGAATGTGAAGAGCCT
GCATAGGGAAGCATTGCAGGACTATATCAAAACGCACTATACGGCACCTC
GGATGGTGATTGCTGGGGCGGGGGCGATTAAGCATGGAAGATTGGTGGAT
TTGGCGCAGCAGTATTTTGGGAATTTACCGCTGCAGGCGCCTCCCGGGGC
GGATACGGGGATGGATGCTGCTGTGTTTGTGGGGAGTGACAAAAGAGTGT
TTTTACCGAAGGAGGAGGAGAGCGAGGCGCACGTAGCGTTGGCGTTTCGG
GGGGCGGCATGGACGTCGGAGTTCGCTTTTCCTTTGATGGTGTTGCAGAC
GATTATGGGGTGTTGGGACAGGACGAGCGGGGCGAGTCGGCAGACGAGCG
GAAGGCTAGGCCAGGCGGTGGCGGAAAAGGAGTTGTGTCATTCGTATGTA
ACGTTTAATACGTGCTATAAGGATATCGGGTTATTTGGCCTCTATGCCGT
GGTGCCACCGGAGAAGTTAAAGGACTTCACGACTGCCATGTGCGAGCATC
TGGTGCGGATGGCCCATGATGTCACTCCCGCGGAGGTGGAGAAGGCAAAG
ACACAATTAAAGTGTACATTGCTGATGCAGTTGGACTCGTTTGCGCATGT
GTGTGAGGATATTGGGCGGCAGATGCTGACGTATGACAGACGGATGACGC
CTGCGGAGATTTTTGCGAGGATTGATGCAGTGCAGGCGGAGGATGTGAAA
GCTACAGCGCTGGCTTACATTATAGATGAGGACCATGCCTTGGCGGCGAT
AGGCCCTGTGGGCGGGTTGCCGGACTATGATTGGATTAGGCGGCAGTGTT
TGTAA
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Synonyms
Publications