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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:790951..793003 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02940.1 vs.
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526]; EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526]; EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana]) HSP 1 Score: 713.8 bits (1841), Expect = 4.200e-202 Identity = 398/585 (68.03%), Postives = 445/585 (76.07%), Query Frame = 0
Query: 1 MHTPATTEPPPAGALVTPP-----------------NAANGTPAPASASMIPPPLVSSSAVSA-NTSSPKKQTPFVKPP------HQQQQPQFQR------------GSG---FVDVLRSMGSLTVSNAYDIREELRFLRRRRGKQEEAIVLSELAALASCLNELVVSTMTSNSGTGNPVGSSGSSGSSEEGGNKGEVGNKAGGGAVAVEPSRRSLVGMLSYEGLLPAFQHTAVPAPMAVLGDAALLHYCLEFLVEGRLEHRKQLGELALVCRQWRDLAQSERFWRPIVLQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGGATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQGPWHEGITLSFDLHDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRKLGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETVDPAERLYSVLPLDCAFMLQCKTEDQEQIGRFILAALENGPSLECD 547
MH P T PP ++ PP NA + P PA ++ P P SSA S + +SP+KQ P ++ HQQQQ Q Q+ GSG FVD+LRS+G LT++NA +IREELR LRRRRGKQEEA++LSELAALASCLNELV+S +TS+S + G SGS GS+EEGG +G+ +KAGGGAVAVEPSRR+L G+ SYEGL+P H AVPAP LGDAALLHYC +FLVEGRL++RKQLG+LALVCRQWRDLAQ++RFW+P+VLQLFPRLSP DHDEED A + DA+A T A V+ G GA T P W+RKYLIQFGRCLFDRP+RQGPWHEGITLSFDLHDEQDG RLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDR LG L+SIEELFQEGDS +Y V+FTIRVTARDERTGKMALLFSS KRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPET+ AERLYSVL LDCAFMLQCKTEDQEQIGRFILAALENGP +E D
Sbjct: 1 MHKPTTAGTPP---VLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGS-GSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGA---SGPDPDAAALTEAAVD--------GAGAGASSEPSTSPGGRA-GWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERD 569
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02940.1 ID=NO02G02940.1|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp ATGCACACGCCCGCGACCACTGAACCGCCGCCCGCGGGTGCCCTAGTCAC GCCACCTAACGCTGCGAATGGTACCCCTGCGCCGGCCTCGGCCAGCATGA TCCCCCCTCCCCTCGTCTCGTCTTCCGCCGTCTCGGCCAATACTTCGTCT CCCAAGAAGCAAACACCTTTTGTGAAACCACCCCACCAACAACAACAGCC GCAATTTCAACGGGGCAGTGGATTTGTGGATGTACTTCGGTCAATGGGCA GTCTCACAGTAAGCAATGCTTACGACATTCGAGAAGAGCTGCGGTTCTTA CGCCGTCGCCGAGGCAAGCAAGAGGAAGCCATCGTCCTGTCCGAGCTGGC GGCGCTGGCGTCGTGCTTGAACGAGCTGGTTGTGTCCACGATGACGAGCA ACAGCGGAACTGGCAACCCGGTAGGGAGCAGCGGCAGCAGCGGGTCGAGC GAAGAAGGGGGTAATAAGGGCGAGGTGGGGAATAAGGCCGGAGGTGGTGC GGTGGCAGTGGAGCCTTCCCGACGTTCCTTAGTTGGTATGTTGTCGTATG AGGGTCTGTTGCCTGCTTTTCAGCATACGGCAGTGCCTGCACCGATGGCT GTGTTGGGTGACGCGGCATTGTTGCATTATTGCTTGGAGTTCTTGGTGGA AGGGCGATTGGAGCATCGGAAGCAGTTGGGGGAGTTGGCGTTGGTCTGTC GGCAGTGGCGGGACTTGGCTCAGTCGGAACGCTTTTGGAGGCCCATTGTG TTGCAGCTTTTCCCCCGACTGAGCCCCACAGCTTTGGATCATGACGAGGA GGACCCTGCGGCTGCAGGGGCCGCCTCGACTACAGATGCCTCTGCGGCGA CAGTGGCAGGGGTTGAGGCTAACGTGGCGGTGGCTGAGCTCGGGGGAGGA GCCACTGGAGGGGTGAATGATCAAACGGGGCCGCAGGCGATGGTGCCGGA TTGGTACCGGAAGTATTTGATTCAATTTGGACGGTGCTTGTTTGATCGGC CGGTTCGACAGGGGCCATGGCACGAGGGGATTACGCTGTCGTTTGATTTG CACGATGAGCAGGATGGCATCCGCTTGTTTTCGTCGACGGGCCCGATTCG GTTCACGGGGACCACGATCCCGGGGATTACTGCCATGAAGCTCACCGGCC GTCGTCGTCGCGTCACGGCTCCTTTCTCCGCCGCGTCCCGCGACCGCAAG CTCGGCGCGCTTACGTCCATCGAAGAACTCTTCCAAGAAGGGGACTCGGG CGAATACTCCGTCGCCTTCACCATCCGTGTCACGGCCCGCGACGAACGTA CCGGCAAGATGGCCTTGCTCTTCTCTTCGGGAAAACGAACGAAACGATGG GTAGAACCATTGGGGGAGGATATGGGGGTGCCTCAAGGCACGCTGTTGGT AAATCAAGGTTGGTCGCGGGTAACTATCCCATCAACCGATCTAGCTATGC AGATGCTGACCGTTTTTTATGTGGCGCCGGTGGAAGGCCAGCCGGAGACG GTTGATCCGGCCGAGCGGCTTTATTCGGTATTGCCGCTTGATTGTGCATT CATGCTGCAGTGTAAGACAGAGGACCAGGAGCAGATAGGTCGATTCATCC TGGCTGCCTTGGAGAACGGCCCGAGCTTAGAGTGTGACAGTTGA back to topprotein sequence of NO02G02940.1 >NO02G02940.1-protein ID=NO02G02940.1-protein|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp MHTPATTEPPPAGALVTPPNAANGTPAPASASMIPPPLVSSSAVSANTSS PKKQTPFVKPPHQQQQPQFQRGSGFVDVLRSMGSLTVSNAYDIREELRFL RRRRGKQEEAIVLSELAALASCLNELVVSTMTSNSGTGNPVGSSGSSGSS EEGGNKGEVGNKAGGGAVAVEPSRRSLVGMLSYEGLLPAFQHTAVPAPMA VLGDAALLHYCLEFLVEGRLEHRKQLGELALVCRQWRDLAQSERFWRPIV LQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGG ATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQGPWHEGITLSFDL HDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRK LGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRW VEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPET VDPAERLYSVLPLDCAFMLQCKTEDQEQIGRFILAALENGPSLECDS* back to topmRNA from alignment at chr2:790951..793003+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02940.1 ID=NO02G02940.1|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at chr2:790951..793003+ (Nannochloropsis oceanica) ATGCACACGCCCGCGACCACTGAACCGCCGCCCGCGGGTGCCCTAGTCAC
GCCACCTAACGCTGCGAATGGTACCCCTGCGCCGGCCTCGGCCAGCATGA
TCCCCCCTCCCCTCGTCTCGTCTTCCGCCGTCTCGGCCAATACTTCGTCT
CCCAAGAAGCAAACACCTTTTGTGAAACCACCCCACCAACAACAACAGCC
GCAATTTCAACGGGGCAGTGGATTTGTGGATGTACTTCGGTCAATGGGCA
GTCTCACAGTAAGCAATGCTTACGACATTCGAGAAGAGCTGCGGTTCTTA
CGCCGTCGCCGAGGCAAGCAAGAGGAAGCCATCGTCCTGTCCGAGCTGGC
GGCGCTGGCGTCGTGCTTGAACGAGCTGGTTGTGTCCACGATGACGAGCA
ACAGCGGAACTGGCAACCCGGTAGGGAGCAGCGGCAGCAGCGGGTCGAGC
GAAGAAGGGGGTAATAAGGGCGAGGTGGGGAATAAGGCCGGAGGTGGTGC
GGTGGCAGTGGAGCCTTCCCGACGTTCCTTAGTTGGTATGTTGTCGTATG
AGGGTCTGTTGCCTGCTTTTCAGCATACGGCAGTGCCTGCACCGATGGCT
GTGTTGGGTGACGCGGCATTGTTGCATTATTGCTTGGAGTTCTTGGTGGA
AGGGCGATTGGAGCATCGGAAGCAGTTGGGGGAGTTGGCGTTGGTCTGTC
GGCAGTGGCGGGACTTGGCTCAGTCGGAACGCTTTTGGAGGCCCATTGTG
TTGCAGCTTTTCCCCCGACTGAGCCCCACAGCTTTGGATCATGACGAGGA
GGACCCTGCGGCTGCAGGGGCCGCCTCGACTACAGATGCCTCTGCGGCGA
CAGTGGCAGGGGTTGAGGCTAACGTGGCGGTGGCTGAGCTCGGGGGAGGA
GCCACTGGAGGGGTGAATGATCAAACGGGGCCGCAGGCGATGGTGCCGGA
TTGGTACCGGAAGTATTTGATTCAATTTGGACGGTGCTTGTTTGATCGGC
CGGTTCGACAGGGGTAAGTCAAGGCGGGAAGAAAGGAGGAAAGCGTGGTT
GTTATTTGTTGGAGGGGTGAACGAAAGAAAGAGAGAGGGAAAGATTGCAG
GGAAGGTATTCACATGTACATCTGTACACTACGCATGACAGGCCATGGCA
CGAGGGGATTACGCTGTCGTTTGATTTGCACGATGAGCAGGATGGCATCC
GCTTGTTTTCGTCGACGGGCCCGATTCGGTTCACGGGGACCACGATCCCG
GGGATGTACGTGCATGGATGGAGGGACAGGGGGAGGGAGGGAGGGAAGAA
GTGAGGGGGCGGAGGAAGGAAAGGACGTCCGTGCGTATTGTTGATCTCAA
TGTGTCTTTCTCACTTTTATCTACTTTTTAACTTCTCTGCCTTGGATTAG
TACTGCCATGAAGCTCACCGGCCGTCGTCGTCGCGTCACGGCTCCTTTCT
CCGCCGCGTCCCGCGACCGCAAGCTCGGCGCGCTTACGTCCATCGAAGAA
CTCTTCCAAGAAGGGGACTCGGGCGAATACTCCGTCGCCTTCACCATCCG
TGTCACGGCCCGCGACGAACGTACCGGCAAGATGGCCTTGCTCTTCTCTT
CGGGAAAACGAACGAAACGATGGGTAGAACCATTGGGGGAGGATATGGGG
GTGCCTCAAGGCACGCTGTTGGTAAATCAAGGTTGGTCGCGGGTAACTAT
CCCATCAACCGATCTAGCTATGCAGATGCTGACCGTTTTTTATGTGGCGC
CGGTGGAAGGCCAGCCGGAGACGGTTGATCCGGCCGAGCGGCTTTATTCG
GTATTGCCGCTTGATTGTGCATTCATGCTGCAGTGTAAGACAGAGGTAAG
CCAGAGGAAGGGGAGGAGAAAGAGGTAGGACACAGGCTAAACCTTTTGCG
AATAAATAGGAAACAAACGTTTCGCCTAGGTACATCCACATCTCACCTGT
ACCTCCTTGACACACTTCTGTATTCAAACAGGACCAGGAGCAGATAGGTC
GATTCATCCTGGCTGCCTTGGAGAACGGCCCGAGCTTAGAGTGTGACAGT
TGA back to topCoding sequence (CDS) from alignment at chr2:790951..793003+ >NO02G02940.1 ID=NO02G02940.1|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at chr2:790951..793003+ (Nannochloropsis oceanica) ATGCACACGCCCGCGACCACTGAACCGCCGCCCGCGGGTGCCCTAGTCAC GCCACCTAACGCTGCGAATGGTACCCCTGCGCCGGCCTCGGCCAGCATGA TCCCCCCTCCCCTCGTCTCGTCTTCCGCCGTCTCGGCCAATACTTCGTCT CCCAAGAAGCAAACACCTTTTGTGAAACCACCCCACCAACAACAACAGCC GCAATTTCAACGGGGCAGTGGATTTGTGGATGTACTTCGGTCAATGGGCA GTCTCACAGTAAGCAATGCTTACGACATTCGAGAAGAGCTGCGGTTCTTA CGCCGTCGCCGAGGCAAGCAAGAGGAAGCCATCGTCCTGTCCGAGCTGGC GGCGCTGGCGTCGTGCTTGAACGAGCTGGTTGTGTCCACGATGACGAGCA ACAGCGGAACTGGCAACCCGGTAGGGAGCAGCGGCAGCAGCGGGTCGAGC GAAGAAGGGGGTAATAAGGGCGAGGTGGGGAATAAGGCCGGAGGTGGTGC GGTGGCAGTGGAGCCTTCCCGACGTTCCTTAGTTGGTATGTTGTCGTATG AGGGTCTGTTGCCTGCTTTTCAGCATACGGCAGTGCCTGCACCGATGGCT GTGTTGGGTGACGCGGCATTGTTGCATTATTGCTTGGAGTTCTTGGTGGA AGGGCGATTGGAGCATCGGAAGCAGTTGGGGGAGTTGGCGTTGGTCTGTC GGCAGTGGCGGGACTTGGCTCAGTCGGAACGCTTTTGGAGGCCCATTGTG TTGCAGCTTTTCCCCCGACTGAGCCCCACAGCTTTGGATCATGACGAGGA GGACCCTGCGGCTGCAGGGGCCGCCTCGACTACAGATGCCTCTGCGGCGA CAGTGGCAGGGGTTGAGGCTAACGTGGCGGTGGCTGAGCTCGGGGGAGGA GCCACTGGAGGGGTGAATGATCAAACGGGGCCGCAGGCGATGGTGCCGGA TTGGTACCGGAAGTATTTGATTCAATTTGGACGGTGCTTGTTTGATCGGC CGGTTCGACAGGGGCCATGGCACGAGGGGATTACGCTGTCGTTTGATTTG CACGATGAGCAGGATGGCATCCGCTTGTTTTCGTCGACGGGCCCGATTCG GTTCACGGGGACCACGATCCCGGGGATTACTGCCATGAAGCTCACCGGCC GTCGTCGTCGCGTCACGGCTCCTTTCTCCGCCGCGTCCCGCGACCGCAAG CTCGGCGCGCTTACGTCCATCGAAGAACTCTTCCAAGAAGGGGACTCGGG CGAATACTCCGTCGCCTTCACCATCCGTGTCACGGCCCGCGACGAACGTA CCGGCAAGATGGCCTTGCTCTTCTCTTCGGGAAAACGAACGAAACGATGG GTAGAACCATTGGGGGAGGATATGGGGGTGCCTCAAGGCACGCTGTTGGT AAATCAAGGTTGGTCGCGGGTAACTATCCCATCAACCGATCTAGCTATGC AGATGCTGACCGTTTTTTATGTGGCGCCGGTGGAAGGCCAGCCGGAGACG GTTGATCCGGCCGAGCGGCTTTATTCGGTATTGCCGCTTGATTGTGCATT CATGCTGCAGTGTAAGACAGAGGACCAGGAGCAGATAGGTCGATTCATCC TGGCTGCCTTGGAGAACGGCCCGAGCTTAGAGTGTGACAGTTGA back to top
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