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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:782678..785274 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02910.1 vs.
Match: EWM30404.1 (hypothetical protein Naga_100026g12 [Nannochloropsis gaditana]) HSP 1 Score: 449.9 bits (1156), Expect = 1.400e-122 Identity = 254/479 (53.03%), Postives = 322/479 (67.22%), Query Frame = 0
Query: 81 SSSYASRRPRLEAHEQVLRLRACEIAAVAGFHPFKDLLELLEEHIYQDLPQLQGEDYAVCDLVLISKEQEFEHLAHQAGPQAAAALRKIHAGSMSATVQTTRDVDQIKMDMGKALRLAAAGGRVAEAGITVLRNHLTHMLSTAFGKRHEDSAIELYESRHGVKVHSQNERMLTWWFPQDPGGVSLETPPPLDIKRLRERREVREGAAAAAKVGGGKEGGGSGLGEGGGAEVEYSVVAVGDQDSSAKVQPSPKAMSSSKSSFLSSSEQHKQHDHHPRSTSRA-TIRGPDAWFRVCGVVDGLTETLDASHDDPNAWQMRTTVVEMKNRVAVRNVRDPPPFHDTLQLVTYMLMVDGANGGGGTTWGDLVQVVRGR--GKGGGEGELEENEDEGEEEDGGGGGFGVSRMTTTRVALDEEQLQHGPLFFAHVVPRLYAYTNFVYSLRHDAGARRKFLLADEEEKWEWVVKHLDFWPRKRPQFNY 557
S+S A R L+ EQVLRLRA EI+A+AG HPFKD+LELL+ HIYQDLP LQ ED A C LVL++KE+EFE L AGP+AA LR++H+ S SA VQTT+DVD+ + D+ L AA GRV +T+LRNH+T+ L+T +GKRHED+ I+ YE+ HGV+VHSQN+ +L W FP+DP VS + PPPL + LR E A A G EG G GE GG++ + V+ G + +P + + + L S Q RA ++RGPDAWFRVCGV+DGLTE LDAS DDP AW++RTTVVE+K+RVA NV+DPPPFHDTLQL+TYMLM+DGA GGGG+TWGDLVQV RG+ G+GG + +DE + TTR+ L QL+HG L+FAHVVPRLYAY++ VY+LR+DA ARR FLL+DE+ KW+ V + L F P RPQFNY
Sbjct: 95 SASSARRLEELKPEEQVLRLRASEISALAGLHPFKDVLELLDRHIYQDLPHLQAEDCASCGLVLMTKEEEFEELVGLAGPEAAL-LRQVHSNSFSAAVQTTQDVDRRRSDITDVLERVAARGRVGAEEVTLLRNHMTYSLATEYGKRHEDAGIKQYEATHGVQVHSQNDTLLAWTFPRDPTAVSWDKPPPLQVTPLRP-----EAMARARGAPGESEGEMPGNGEAGGSDGA-ARVSPGQESPLGTDGCAPLGVPNGRLEALVSVPGVCQ--------GRARSLRGPDAWFRVCGVMDGLTEALDASDDDPAAWRLRTTVVEVKHRVAPANVQDPPPFHDTLQLLTYMLMLDGARGGGGSTWGDLVQVARGQWSGRGGSQSCGPRTDDE-----------EATVTATTRITLKGGQLEHGKLYFAHVVPRLYAYSDLVYALRNDADARRAFLLSDEDAKWDLVYRRLPFLPAFRPQFNY 547
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02910.1 ID=NO02G02910.1|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp
ACAGAAAGGGATGGCATGACCTGAAACTTAAGCTGTCCCTGCACGCAGGT
ATCCAATAGGCCCGAGGTCGGCATCTTTCCTCAACGATTCATACGGGTCC
CGGGGCCATCATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATA
CCGTCTCATCAACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCC
CTCTCTGCAGCAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGAT
GCTTGACCCACGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGC
AATTCACATTACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGAT
TCCTCCTCATATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGT
CCTGCGGCTCCGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCAT
TCAAAGACCTACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCT
CAATTACAAGGGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAA
GGAACAAGAGTTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCG
CGGCACTACGTAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACC
ACAAGGGACGTGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACT
GGCTGCGGCGGGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGA
ATCATTTGACCCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGAT
TCGGCGATTGAATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCA
GAATGAGAGGATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGT
CATTGGAAACTCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGG
GAAGTGCGCGAAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGA
AGGAGGAGGATCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATA
GCGTTGTGGCTGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCA
CCGAAAGCAATGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACA
GCACAAGCAGCACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCC
GGGGCCCCGATGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACT
GAAACCCTGGACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGAC
AACAGTAGTAGAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACC
CGCCCCCTTTTCACGACACCCTGCAATTGGTGACGTACATGCTAATGGTA
GATGGGGCGAATGGAGGGGGAGGGACGACATGGGGGGATTTGGTGCAGGT
AGTGCGTGGAAGAGGAAAAGGCGGAGGAGAAGGAGAGTTAGAAGAAAACG
AAGACGAAGGAGAAGAAGAAGACGGAGGAGGAGGAGGGTTTGGTGTTTCC
AGGATGACGACAACGCGGGTTGCTTTAGACGAAGAGCAGCTGCAACATGG
CCCGTTATTTTTCGCGCATGTTGTGCCACGGTTGTATGCCTACACCAATT
TTGTGTACTCGTTGCGGCATGATGCGGGTGCCCGACGAAAATTCTTGTTG
GCCGATGAAGAAGAGAAGTGGGAATGGGTGGTAAAGCATCTGGACTTCTG
GCCTCGGAAGCGGCCACAGTTTAATTACGGCCACAGTGGGGGTGGTGATG
ATGGTAGTACCAGTGGACGACTGTGGCAGCAACTGAGGGGAGATAAACGT
AGACAGAACAAAAAGAAGACCAAGAAGATGCAGGCCGCACGCGGGGAGAG
CAGCAGCAGCGGCCATCTGGGAGTGCTTCATGAGCAGAAGCAGTCGCAAT
CACAGCCGCAGAGGAAGAGACAGCGGGCGAATTTGCATGGGCACTACGAA
TTGCGAAGCCAACAGAGCATGGTCACGCGAAGCACGAAGCGCAAATCCAA
TTCACCGATGCCGGGAGGGGGAGAAAGGGGAGGACGAGGACGAGGGCGAG
GACGAGGAGGGGATTCGCTGTTAGTTTGAATGACCCGACGAAGTAATTGT
GGGCGGATAAAAGGCATTGATGTGTGGGACGGGGAAGCGAGCCAGAGCAA
GGTGGCTCCCAGAAGCAAGGACCTGCATAGAGCAAGACAGGGGACTGTGA
GAGCAAATTACTGAATCGCAAAAGATTGGGAACCATGTCGAAGCGGACGG
ACGACGTCGTGTTTTCGAAAACGCTGAAGACCGGGGGGGGGAGTGGGGGA
GTATGTAGCATATACGCAGACATATCGAAATCAAGAGCATGTAGACTGTA
ACTGTTTGTACACTTGCCATGAAAATGCCTCGTAAACTAGAAAGTAGAAA
GTTAAGA back to topprotein sequence of NO02G02910.1 >NO02G02910.1-protein ID=NO02G02910.1-protein|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MDQPSAAEAAVENTVSSTTQQAKGILEHVPLSAAAPDASSLSSPPSMLDP
REDADLGHCQCQSQFTLLSSTEAVSSSPSDSSSYASRRPRLEAHEQVLRL
RACEIAAVAGFHPFKDLLELLEEHIYQDLPQLQGEDYAVCDLVLISKEQE
FEHLAHQAGPQAAAALRKIHAGSMSATVQTTRDVDQIKMDMGKALRLAAA
GGRVAEAGITVLRNHLTHMLSTAFGKRHEDSAIELYESRHGVKVHSQNER
MLTWWFPQDPGGVSLETPPPLDIKRLRERREVREGAAAAAKVGGGKEGGG
SGLGEGGGAEVEYSVVAVGDQDSSAKVQPSPKAMSSSKSSFLSSSEQHKQ
HDHHPRSTSRATIRGPDAWFRVCGVVDGLTETLDASHDDPNAWQMRTTVV
EMKNRVAVRNVRDPPPFHDTLQLVTYMLMVDGANGGGGTTWGDLVQVVRG
RGKGGGEGELEENEDEGEEEDGGGGGFGVSRMTTTRVALDEEQLQHGPLF
FAHVVPRLYAYTNFVYSLRHDAGARRKFLLADEEEKWEWVVKHLDFWPRK
RPQFNYGHSGGGDDGSTSGRLWQQLRGDKRRQNKKKTKKMQAARGESSSS
GHLGVLHEQKQSQSQPQRKRQRANLHGHYELRSQQSMVTRSTKRKSNSPM
PGGGERGGRGRGRGRGGDSLLV* back to topmRNA from alignment at chr2:782678..785274+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02910.1 ID=NO02G02910.1|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2597bp|location=Sequence derived from alignment at chr2:782678..785274+ (Nannochloropsis oceanica)
ACAGAAAGGGATGGCATGACCTGAAACTTAAGCTGTCCCTGCACGCAGGT
ATCCAATAGGCCCGAGGTCGGCATCTTTCCTCAACGATTCATACGGGTCC
CGGGGCCATCATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATA
CCGTCTCATCAACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCC
CTCTCTGCAGCAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGAT
GCTTGACCCACGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGC
AATTCACATTACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGAT
TCCTCCTCATATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGT
CCTGCGGCTCCGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCAT
TCAAAGACCTACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCT
CAATTACAAGGGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAA
GGAACAAGAGTTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCG
CGGCACTACGTAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACC
ACAAGGGACGTGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACT
GGCTGCGGCGGGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGA
ATCATTTGACCCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGAT
TCGGCGATTGAATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCA
GAATGAGAGGATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGT
CATTGGAAACTCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGG
GAAGTGCGCGAAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGA
AGGAGGAGGATCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATA
GCGTTGTGGCTGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCA
CCGAAAGCAATGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACA
GCACAAGCAGCACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCC
GGGGCCCCGATGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACT
GAAACCCTGGACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGAC
AACAGTAGTAGAGGTACGTGAAATGGATGGCATTTGATTGAATGGTGGTA
TGATCAGAGGCAGGGGACAAATTCACCTTGCTCCATGGGTGATGTAATCC
TCCTTGCTTAACTTCCATCTCACTCACACACATACACACGCATGCACACA
CAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACCCGCCCCCTTT
TCACGACACCCTGCAATTGGTGACGTACATGCTAATGGTAGATGGGGCGA
ATGGAGGGGGAGGGACGACATGGGGGGATTTGGTGCAGGTAGTGCGTGGA
AGAGGAAAAGGCGGAGGAGAAGGAGAGTTAGAAGAAAACGAAGACGAAGG
AGAAGAAGAAGACGGAGGAGGAGGAGGGTTTGGTGTTTCCAGGATGACGA
CAACGCGGGTTGCTTTAGACGAAGAGCAGCTGCAACATGGCCCGTTATTT
TTCGCGCATGTTGTGCCACGGTTGTATGCCTACACCAATTTTGTGTACTC
GTTGCGGCATGATGCGGGTGCCCGACGAAAATTCTTGTTGGCCGATGAAG
AAGAGAAGTGGGAATGGGTGGTAAAGCATCTGGACTTCTGGCCTCGGAAG
CGGCCACAGTTTAATTACGGCCACAGTGGGGGTGGTGATGATGGTAGTAC
CAGTGGACGACTGTGGCAGCAACTGAGGGGAGATAAACGTAGACAGAACA
AAAAGAAGACCAAGAAGATGCAGGCCGCACGCGGGGAGAGCAGCAGCAGC
GGCCATCTGGGAGTGCTTCATGAGCAGAAGCAGTCGCAATCACAGCCGCA
GAGGAAGAGACAGCGGGCGAATTTGCATGGGCACTACGAATTGCGAAGCC
AACAGAGCATGGTCACGCGAAGCACGAAGCGCAAATCCAATTCACCGATG
CCGGGAGGGGGAGAAAGGGGAGGACGAGGACGAGGGCGAGGACGAGGAGG
GGATTCGCTGTTAGTTTGAATGACCCGACGAAGTAATTGTGGGCGGATAA
AAGGCATTGATGTGTGGGACGGGGAAGCGAGCCAGAGCAAGGTGGCTCCC
AGAAGCAAGGACCTGCATAGAGCAAGACAGGGGACTGTGAGAGCAAATTA
CTGAATCGCAAAAGATTGGGAACCATGTCGAAGCGGACGGACGACGTCGT
GTTTTCGAAAACGCTGAAGACCGGGGGGGGGAGTGGGGGAGTATGTAGCA
TATACGCAGACATATCGAAATCAAGAGCATGTAGACTGTAACTGTTTGTA
CACTTGCCATGAAAATGCCTCGTAAACTAGAAAGTAGAAAGTTAAGA back to topCoding sequence (CDS) from alignment at chr2:782678..785274+ >NO02G02910.1 ID=NO02G02910.1|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=2019bp|location=Sequence derived from alignment at chr2:782678..785274+ (Nannochloropsis oceanica)
ATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATACCGTCTCATC
AACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCCCTCTCTGCAG
CAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGATGCTTGACCCA
CGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGCAATTCACATT
ACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGATTCCTCCTCAT
ATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGTCCTGCGGCTC
CGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCATTCAAAGACCT
ACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCTCAATTACAAG
GGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAAGGAACAAGAG
TTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCGCGGCACTACG
TAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACCACAAGGGACG
TGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACTGGCTGCGGCG
GGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGAATCATTTGAC
CCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGATTCGGCGATTG
AATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCAGAATGAGAGG
ATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGTCATTGGAAAC
TCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGGGAAGTGCGCG
AAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGAAGGAGGAGGA
TCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATAGCGTTGTGGC
TGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCACCGAAAGCAA
TGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACAGCACAAGCAG
CACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCCGGGGCCCCGA
TGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACTGAAACCCTGG
ACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGACAACAGTAGTA
GAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACCCGCCCCCTTT
TCACGACACCCTGCAATTGGTGACGTACATGCTAATGGTAGATGGGGCGA
ATGGAGGGGGAGGGACGACATGGGGGGATTTGGTGCAGGTAGTGCGTGGA
AGAGGAAAAGGCGGAGGAGAAGGAGAGTTAGAAGAAAACGAAGACGAAGG
AGAAGAAGAAGACGGAGGAGGAGGAGGGTTTGGTGTTTCCAGGATGACGA
CAACGCGGGTTGCTTTAGACGAAGAGCAGCTGCAACATGGCCCGTTATTT
TTCGCGCATGTTGTGCCACGGTTGTATGCCTACACCAATTTTGTGTACTC
GTTGCGGCATGATGCGGGTGCCCGACGAAAATTCTTGTTGGCCGATGAAG
AAGAGAAGTGGGAATGGGTGGTAAAGCATCTGGACTTCTGGCCTCGGAAG
CGGCCACAGTTTAATTACGGCCACAGTGGGGGTGGTGATGATGGTAGTAC
CAGTGGACGACTGTGGCAGCAACTGAGGGGAGATAAACGTAGACAGAACA
AAAAGAAGACCAAGAAGATGCAGGCCGCACGCGGGGAGAGCAGCAGCAGC
GGCCATCTGGGAGTGCTTCATGAGCAGAAGCAGTCGCAATCACAGCCGCA
GAGGAAGAGACAGCGGGCGAATTTGCATGGGCACTACGAATTGCGAAGCC
AACAGAGCATGGTCACGCGAAGCACGAAGCGCAAATCCAATTCACCGATG
CCGGGAGGGGGAGAAAGGGGAGGACGAGGACGAGGGCGAGGACGAGGAGG
GGATTCGCTGTTAGTTTGA back to top
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