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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:775960..778727 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02880.2 vs.
Match: EWM30372.1 (urate oxidase [Nannochloropsis gaditana]) HSP 1 Score: 547.7 bits (1410), Expect = 2.500e-152 Identity = 268/340 (78.82%), Postives = 287/340 (84.41%), Query Frame = 0
Query: 1 MSGVLGENCHGKGGVRLLKLHRSGDRHDFIQLTAQVLLTGGCEDAFIKADNRNIVATDTCKNTIYVLARRHHFASIEEFGIIVAKHFLAQYPNIVYKADIQLVKDLWTRVVNKDSHGRIAQHNHAFVKVGPQNTYTHVTAEKVGGSVNVSVRSGTYILLPMSCFFHPLTPPHLIVTSSSPSQTGVRSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTSIDGEWTFTPTAIASSPDYEMLNKLVVDTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVDLSKFKMENKDHTGKPDIFLPTSDPHGMIKAVIERPRSARL 341
MSG LG NCHGKGGVRLLKLHR GD HDFIQLTAQ+LLTGG ++AF KADNRNIVATDT KNT+Y+LARRH FASIEEFGII+AKHFLAQYP IV K D+QLVKDLWTRVVNKDSHGRIAQHNHAF+KVGPQ T+TH+ AEKVGGSV VSVRSG +RSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTS+DGEW+F+ IAS PDYE LNK V+DTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVDLSKF++ENKDH+GKPDIFLP DPHGMIKA+IERPR ARL
Sbjct: 1 MSGFLGANCHGKGGVRLLKLHRQGDHHDFIQLTAQILLTGGVDEAFTKADNRNIVATDTVKNTVYILARRHQFASIEEFGIIIAKHFLAQYPAIVTKVDVQLVKDLWTRVVNKDSHGRIAQHNHAFIKVGPQTTHTHIVAEKVGGSVVVSVRSG------------------------------IRSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTSVDGEWSFSAATIASRPDYEALNKTVLDTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVDLSKFRIENKDHSGKPDIFLPMDDPHGMIKAIIERPRGARL 310
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02880.2 ID=NO02G02880.2|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp GTTATCAACGGTCAAAGGCGCCTGGTGAAGTAAGGATTGGGCAAGGGCTG ATGTAAGTACGTATGTATCTGCCACGCAATGACGTGGTAGTGGCTGTGTC GCCTCGCATCGTGGGCATATGGACAGGGAAAAACAAGAAGGGTGCACCTG AGAAGAGGAGAGATGGTGGTAGGGCTCATCTCAACCCGTTCCTCTCGACC TCCCCTGTTCAAGGAAGCAGACACCAGCTCAGGTGGTTCCAGTCTCATCC ATTCATGTGCAGGTCCTCCCATGGACAGCACTAGCAAACAGATAAGGAAA GTGGGCGTATTTGAAGGACCTAGCCCTGCCATAGTGCTTTCCAAAAGAGC TACGCGCCTGCCTTCTTCGCCCCTACCCCTGTCACCACCCCCAATCCTTT TCGGGGCGGCTTGCTTCTCCAAACCCCAGCTGCAAATTGTGCGCTGTCCC TCATCCTCGACGGCAATAAAAGCTATGAAAAGCATGAAAGGGTGACATAA GGGGATCATGCTCGAGGCAAGAGTCGAGGGACATTGTTTTAGAAGAGGCG ATGTGACCAGACACCACCTGACACCTCCGAGCCTGCATCAGCAACATGTG GCAAGCACTGAGGACTCGCACACACCCCGCCAACGCGTACACATACATAT TCGCACACACACAGAATCCTCTCTCCGCTCCTCACCATGTCTGGTGTTCT GGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGCTCCACC GCTCCGGCGACCGCCACGACTTCATCCAGCTCACGGCCCAAGTCCTTCTG ACAGGTGGCTGTGAAGACGCCTTCATCAAGGCTGATAACCGGAACATCGT CGCGACGGATACGTGCAAAAACACCATCTACGTTCTAGCCCGTCGACACC ACTTTGCCTCGATCGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTT GCTCAATACCCGAATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGA CCTGTGGACCCGCGTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGC ACAACCACGCCTTTGTAAAGGTTGGTCCTCAGAATACCTACACGCACGTA ACAGCGGAAAAAGTGGGTGGCTCCGTCAACGTCTCCGTCCGTTCAGGTAC ATACATTCTACTCCCGATGTCGTGTTTTTTTCACCCCCTCACTCCCCCCC ACCTCATCGTCACCTCATCATCACCATCACAAACAGGCGTTCGGTCCTTG ATTCTCCTCAAGACGACTCAGTCTGGGTTCGAGAACTTTCACCGGGACGA ATTCAGGGCATTGGGCGACACGAACGATCGCCTTGTTGGCACCTCCATCG ACGGCGAATGGACGTTCACCCCTACTGCAATTGCCTCCAGTCCGGATTAT GAGATGCTTAACAAGCTGGTGGTAGATACCCTGATTGATGAATTTGCAGG ACCTGCGGATAAGGGCGTGTATAGCGTCTCGGTCCAGCAGACGCTTTATG ACATGGGCACGGGCTTGCTGGCGAAGGTGCCGGGGGTGGATAAAATTGAA CTCTACATGCCCAACATCCACAACATCCCCGTGGATCTGTCCAAGTTCAA GATGGAAAACAAGGACCATACGGGCAAGCCCGACATTTTCCTGCCTACCA GCGACCCGCACGGGATGATCAAAGCTGTGATCGAGCGACCTCGCAGCGCC CGCCTTTAAAATGACGTGTTGAATAAAGAGTGGAGGTCAGAGATCTTTGC GGTGTGATAAAATAAGTGGCTGTGCCCATGGGGTGTGCCTGCCTGTGTTC GTTTACGTTAAAGAGGCGAGAGCGCGAGACAGCGAATGAGAAGGACAATG AAGGAAAGAAGGAGAAAAAGTCTGACAGCTAAAAGACGACGAATGGAAAT ATAGAAAGGACCTAGGAGGAGGACTAGCAGGGAACAGTTTGGGAAGGGCC GAATCAGGCCCACTTTCAGGCTCAGGTCCCATTTTCTTCAACTAAATATA TGCTGAGCTAAGGTGCAGAATTGTGACAGGACGGAGACGCAAACGTGCGC ATACGCACATACACGCACAAACCTTAAAAGTCCAAAACCGATTGACTGGA AGTAACCCCACCCCCCGCAAAAAAAAAACGAAAACACTCAGAGACATAC back to topprotein sequence of NO02G02880.2 >NO02G02880.2-protein ID=NO02G02880.2-protein|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp MSGVLGENCHGKGGVRLLKLHRSGDRHDFIQLTAQVLLTGGCEDAFIKAD NRNIVATDTCKNTIYVLARRHHFASIEEFGIIVAKHFLAQYPNIVYKADI QLVKDLWTRVVNKDSHGRIAQHNHAFVKVGPQNTYTHVTAEKVGGSVNVS VRSGTYILLPMSCFFHPLTPPHLIVTSSSPSQTGVRSLILLKTTQSGFEN FHRDEFRALGDTNDRLVGTSIDGEWTFTPTAIASSPDYEMLNKLVVDTLI DEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVD LSKFKMENKDHTGKPDIFLPTSDPHGMIKAVIERPRSARL* back to topmRNA from alignment at chr2:775960..778727+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02880.2 ID=NO02G02880.2|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2768bp|location=Sequence derived from alignment at chr2:775960..778727+ (Nannochloropsis oceanica) GTTATCAACGGTCAAAGGCGCCTGGTGAAGTAAGGATTGGGCAAGGGCTG
ATGTAAGTACGTATGTATCTGCCACGCAATGACGTGGTAGTGGCTGTGTC
GCCTCGCATCGTGGGCATATGGACAGGGAAAAACAAGAAGGGTGCACCTG
AGAAGAGGAGAGATGGTGGTAGGGCTCATCTCAACCCGTTCCTCTCGACC
TCCCCTGTTCAAGGAAGCAGACACCAGCTCAGGTGGTTCCAGTCTCATCC
ATTCATGTGCAGGTCCTCCCATGGACAGCACTAGCAAACAGATAAGGAAA
GTGGGCGTATTTGAAGGACCTAGCCCTGCCATAGTGCTTTCCAAAAGAGC
TACGCGCCTGCCTTCTTCGCCCCTACCCCTGTCACCACCCCCAATCCTTT
TCGGGGCGGCTTGCTTCTCCAAACCCCAGCTGCAAATTGTGCGCTGTCCC
TCATCCTCGACGGCAATAAAAGCTATGAAAAGCATGAAAGGGTGACATAA
GGGGATCATGCTCGAGGCAAGAGTCGAGGGACATTGTTTTAGAAGAGGCG
ATGTGACCAGACACCACCTGACACCTCCGAGCCTGCATCAGCAACATGTG
GCAAGCACTGAGGACTCGCACACACCCCGCCAACGCGTACACATACATAT
TCGCACACACACAGAATCCTCTCTCCGCTCCTCACCATGTCTGGTGTTCT
GGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGGTTAGTG
TCGTGTTGCTGACACAGCAGGGTGGGAAAGGCCGCTCACATGGAGCACAG
ACAGGGATGAATCGGTAACTTAGTGCCATCATTCAATCTTTTTTAAGGCA
TATTTTCACTTCGATTGTCCATGATAGTCATAAAACGAAGCCGTCAACCT
GTTTCTTCCTTGCCCTTCTTCCTACACAGCTCCACCGCTCCGGCGACCGC
CACGACTTCATCCAGCTCACGGCCCAAGTCCTTCTGACAGTACGTGCCTT
AACGTGAATCTTTGTGATCTTTAACTGTCATTGTCATGCATAGTCGGGGC
ATTGATACAACTTCCCTTTTTCCTTGCACTATGATGTCGACCCTTGTCCC
TGACACACATTTCTCCTTCTCTTATACCTTTTTTTCTTCTCCAAAAACAG
GGTGGCTGTGAAGACGCCTTCATCAAGGCTGATAACCGGAACATCGTCGC
GACGGATACGTGCAAAAACACCATCTACGTTCTAGCCCGTCGACACCACT
TTGCCTCGATCGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTTGCT
CAATACCCGAATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGACCT
GTGGACCCGCGTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGCACA
ACCACGCCTTTGTAAAGGTTGGTCCTCAGAATACCTACACGCAGTAAGTG
AAGAAAAGGGGGGGGGGGGGATGGGATGGGGGCTGTGGTTGGAAGAAAAC
GTGTTAAAGAATAGCGGCCGTTTATTGGTGGTTTTCTGCCTTGACATATT
CTTTTCTCCCATTCATACGCGCAGCGTAACAGCGGAAAAAGTGGGTGGCT
CCGTCAACGTCTCCGTCCGTTCAGGTACATACATTCTACTCCCGATGTCG
TGTTTTTTTCACCCCCTCACTCCCCCCCACCTCATCGTCACCTCATCATC
ACCATCACAAACAGGCGTTCGGTCCTTGATTCTCCTCAAGACGACTCAGT
CTGGGTTCGAGAACTTTCACCGGGACGAATTCAGGGCATTGGGCGACACG
AACGATCGCCTTGTTGGCACCTCCATCGACGGCGAATGGACGTTCACCCC
TACTGCAATTGCCTCCAGTCCGGATTATGAGATGCTTAACAAGCTGGTGG
TAGATACCCTGATTGATGAATTTGCAGGACCTGCGGATAAGGGCGTGTAT
AGCGTCTCGGTCCAGCAGACGCTTTATGACATGGGCACGGGCTTGCTGGC
GAAGGTGCCGGGGGTGGATAAAATTGAACTCTACATGGTGCGTTTTCTTC
CTCCCATCCTTTTATTCACAGTCCATTTCTATCGAGTGTACTGACTGAGT
GCCCCATTTCCATTCTTTTGAAAAATATCAATTGCTTCTTACCTTTCTCC
TTCTCTCCCTCTCTCTCAATTCACCCAGCCCAACATCCACAACATCCCCG
TGGATCTGTCCAAGTTCAAGATGGAAAACAAGGACCATACGGGCAAGCCC
GACATTTTCCTGCCTACCAGCGACCCGCACGGGATGATCAAAGCTGTGAT
CGAGCGACCTCGCAGCGCCCGCCTTTAAAATGACGTGTTGAATAAAGAGT
GGAGGTCAGAGATCTTTGCGGTGTGATAAAATAAGTGGCTGTGCCCATGG
GGTGTGCCTGCCTGTGTTCGTTTACGTTAAAGAGGCGAGAGCGCGAGACA
GCGAATGAGAAGGACAATGAAGGAAAGAAGGAGAAAAAGTCTGACAGCTA
AAAGACGACGAATGGAAATATAGAAAGGACCTAGGAGGAGGACTAGCAGG
GAACAGTTTGGGAAGGGCCGAATCAGGCCCACTTTCAGGCTCAGGTCCCA
TTTTCTTCAACTAAATATATGCTGAGCTAAGGTGCAGAATTGTGACAGGA
CGGAGACGCAAACGTGCGCATACGCACATACACGCACAAACCTTAAAAGT
CCAAAACCGATTGACTGGAAGTAACCCCACCCCCCGCAAAAAAAAAACGA
AAACACTCAGAGACATAC back to topCoding sequence (CDS) from alignment at chr2:775960..778727+ >NO02G02880.2 ID=NO02G02880.2|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr2:775960..778727+ (Nannochloropsis oceanica) ATGTCTGGTGTTCTGGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACT CCTTAAGCTCCACCGCTCCGGCGACCGCCACGACTTCATCCAGCTCACGG CCCAAGTCCTTCTGACAGGTGGCTGTGAAGACGCCTTCATCAAGGCTGAT AACCGGAACATCGTCGCGACGGATACGTGCAAAAACACCATCTACGTTCT AGCCCGTCGACACCACTTTGCCTCGATCGAAGAGTTTGGAATCATCGTTG CCAAGCACTTCCTTGCTCAATACCCGAATATCGTTTACAAGGCGGACATT CAGCTCGTCAAGGACCTGTGGACCCGCGTGGTGAATAAGGATTCTCACGG TCGGATAGCTCAGCACAACCACGCCTTTGTAAAGGTTGGTCCTCAGAATA CCTACACGCACGTAACAGCGGAAAAAGTGGGTGGCTCCGTCAACGTCTCC GTCCGTTCAGGTACATACATTCTACTCCCGATGTCGTGTTTTTTTCACCC CCTCACTCCCCCCCACCTCATCGTCACCTCATCATCACCATCACAAACAG GCGTTCGGTCCTTGATTCTCCTCAAGACGACTCAGTCTGGGTTCGAGAAC TTTCACCGGGACGAATTCAGGGCATTGGGCGACACGAACGATCGCCTTGT TGGCACCTCCATCGACGGCGAATGGACGTTCACCCCTACTGCAATTGCCT CCAGTCCGGATTATGAGATGCTTAACAAGCTGGTGGTAGATACCCTGATT GATGAATTTGCAGGACCTGCGGATAAGGGCGTGTATAGCGTCTCGGTCCA GCAGACGCTTTATGACATGGGCACGGGCTTGCTGGCGAAGGTGCCGGGGG TGGATAAAATTGAACTCTACATGCCCAACATCCACAACATCCCCGTGGAT CTGTCCAAGTTCAAGATGGAAAACAAGGACCATACGGGCAAGCCCGACAT TTTCCTGCCTACCAGCGACCCGCACGGGATGATCAAAGCTGTGATCGAGC GACCTCGCAGCGCCCGCCTTTAA back to top
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