NO02G02880.2, NO02G02880.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02880.2
Unique NameNO02G02880.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2149
Alignment locationchr2:775960..778727 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:775960..778727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02880.2 vs.
Match: EWM30372.1 (urate oxidase [Nannochloropsis gaditana])

HSP 1 Score: 547.7 bits (1410), Expect = 2.500e-152
Identity = 268/340 (78.82%), Postives = 287/340 (84.41%), Query Frame = 0
Query:    1 MSGVLGENCHGKGGVRLLKLHRSGDRHDFIQLTAQVLLTGGCEDAFIKADNRNIVATDTCKNTIYVLARRHHFASIEEFGIIVAKHFLAQYPNIVYKADIQLVKDLWTRVVNKDSHGRIAQHNHAFVKVGPQNTYTHVTAEKVGGSVNVSVRSGTYILLPMSCFFHPLTPPHLIVTSSSPSQTGVRSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTSIDGEWTFTPTAIASSPDYEMLNKLVVDTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVDLSKFKMENKDHTGKPDIFLPTSDPHGMIKAVIERPRSARL 341
            MSG LG NCHGKGGVRLLKLHR GD HDFIQLTAQ+LLTGG ++AF KADNRNIVATDT KNT+Y+LARRH FASIEEFGII+AKHFLAQYP IV K D+QLVKDLWTRVVNKDSHGRIAQHNHAF+KVGPQ T+TH+ AEKVGGSV VSVRSG                              +RSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTS+DGEW+F+   IAS PDYE LNK V+DTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVDLSKF++ENKDH+GKPDIFLP  DPHGMIKA+IERPR ARL
Sbjct:    1 MSGFLGANCHGKGGVRLLKLHRQGDHHDFIQLTAQILLTGGVDEAFTKADNRNIVATDTVKNTVYILARRHQFASIEEFGIIIAKHFLAQYPAIVTKVDVQLVKDLWTRVVNKDSHGRIAQHNHAFIKVGPQTTHTHIVAEKVGGSVVVSVRSG------------------------------IRSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTSVDGEWSFSAATIASRPDYEALNKTVLDTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVDLSKFRIENKDHSGKPDIFLPMDDPHGMIKAIIERPRGARL 310          
The following BLAST results are available for this feature:
BLAST of NO02G02880.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30372.12.500e-15278.82urate oxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02880NO02G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02880.2NO02G02880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02880.2.cds1NO02G02880.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02880.2.cds2NO02G02880.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02880.2.cds3NO02G02880.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02880.2.cds4NO02G02880.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02880.2.cds5NO02G02880.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02880.2 ID=NO02G02880.2|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp
GTTATCAACGGTCAAAGGCGCCTGGTGAAGTAAGGATTGGGCAAGGGCTG
ATGTAAGTACGTATGTATCTGCCACGCAATGACGTGGTAGTGGCTGTGTC
GCCTCGCATCGTGGGCATATGGACAGGGAAAAACAAGAAGGGTGCACCTG
AGAAGAGGAGAGATGGTGGTAGGGCTCATCTCAACCCGTTCCTCTCGACC
TCCCCTGTTCAAGGAAGCAGACACCAGCTCAGGTGGTTCCAGTCTCATCC
ATTCATGTGCAGGTCCTCCCATGGACAGCACTAGCAAACAGATAAGGAAA
GTGGGCGTATTTGAAGGACCTAGCCCTGCCATAGTGCTTTCCAAAAGAGC
TACGCGCCTGCCTTCTTCGCCCCTACCCCTGTCACCACCCCCAATCCTTT
TCGGGGCGGCTTGCTTCTCCAAACCCCAGCTGCAAATTGTGCGCTGTCCC
TCATCCTCGACGGCAATAAAAGCTATGAAAAGCATGAAAGGGTGACATAA
GGGGATCATGCTCGAGGCAAGAGTCGAGGGACATTGTTTTAGAAGAGGCG
ATGTGACCAGACACCACCTGACACCTCCGAGCCTGCATCAGCAACATGTG
GCAAGCACTGAGGACTCGCACACACCCCGCCAACGCGTACACATACATAT
TCGCACACACACAGAATCCTCTCTCCGCTCCTCACCATGTCTGGTGTTCT
GGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGCTCCACC
GCTCCGGCGACCGCCACGACTTCATCCAGCTCACGGCCCAAGTCCTTCTG
ACAGGTGGCTGTGAAGACGCCTTCATCAAGGCTGATAACCGGAACATCGT
CGCGACGGATACGTGCAAAAACACCATCTACGTTCTAGCCCGTCGACACC
ACTTTGCCTCGATCGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTT
GCTCAATACCCGAATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGA
CCTGTGGACCCGCGTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGC
ACAACCACGCCTTTGTAAAGGTTGGTCCTCAGAATACCTACACGCACGTA
ACAGCGGAAAAAGTGGGTGGCTCCGTCAACGTCTCCGTCCGTTCAGGTAC
ATACATTCTACTCCCGATGTCGTGTTTTTTTCACCCCCTCACTCCCCCCC
ACCTCATCGTCACCTCATCATCACCATCACAAACAGGCGTTCGGTCCTTG
ATTCTCCTCAAGACGACTCAGTCTGGGTTCGAGAACTTTCACCGGGACGA
ATTCAGGGCATTGGGCGACACGAACGATCGCCTTGTTGGCACCTCCATCG
ACGGCGAATGGACGTTCACCCCTACTGCAATTGCCTCCAGTCCGGATTAT
GAGATGCTTAACAAGCTGGTGGTAGATACCCTGATTGATGAATTTGCAGG
ACCTGCGGATAAGGGCGTGTATAGCGTCTCGGTCCAGCAGACGCTTTATG
ACATGGGCACGGGCTTGCTGGCGAAGGTGCCGGGGGTGGATAAAATTGAA
CTCTACATGCCCAACATCCACAACATCCCCGTGGATCTGTCCAAGTTCAA
GATGGAAAACAAGGACCATACGGGCAAGCCCGACATTTTCCTGCCTACCA
GCGACCCGCACGGGATGATCAAAGCTGTGATCGAGCGACCTCGCAGCGCC
CGCCTTTAAAATGACGTGTTGAATAAAGAGTGGAGGTCAGAGATCTTTGC
GGTGTGATAAAATAAGTGGCTGTGCCCATGGGGTGTGCCTGCCTGTGTTC
GTTTACGTTAAAGAGGCGAGAGCGCGAGACAGCGAATGAGAAGGACAATG
AAGGAAAGAAGGAGAAAAAGTCTGACAGCTAAAAGACGACGAATGGAAAT
ATAGAAAGGACCTAGGAGGAGGACTAGCAGGGAACAGTTTGGGAAGGGCC
GAATCAGGCCCACTTTCAGGCTCAGGTCCCATTTTCTTCAACTAAATATA
TGCTGAGCTAAGGTGCAGAATTGTGACAGGACGGAGACGCAAACGTGCGC
ATACGCACATACACGCACAAACCTTAAAAGTCCAAAACCGATTGACTGGA
AGTAACCCCACCCCCCGCAAAAAAAAAACGAAAACACTCAGAGACATAC
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protein sequence of NO02G02880.2

>NO02G02880.2-protein ID=NO02G02880.2-protein|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MSGVLGENCHGKGGVRLLKLHRSGDRHDFIQLTAQVLLTGGCEDAFIKAD
NRNIVATDTCKNTIYVLARRHHFASIEEFGIIVAKHFLAQYPNIVYKADI
QLVKDLWTRVVNKDSHGRIAQHNHAFVKVGPQNTYTHVTAEKVGGSVNVS
VRSGTYILLPMSCFFHPLTPPHLIVTSSSPSQTGVRSLILLKTTQSGFEN
FHRDEFRALGDTNDRLVGTSIDGEWTFTPTAIASSPDYEMLNKLVVDTLI
DEFAGPADKGVYSVSVQQTLYDMGTGLLAKVPGVDKIELYMPNIHNIPVD
LSKFKMENKDHTGKPDIFLPTSDPHGMIKAVIERPRSARL*
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mRNA from alignment at chr2:775960..778727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02880.2 ID=NO02G02880.2|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2768bp|location=Sequence derived from alignment at chr2:775960..778727+ (Nannochloropsis oceanica)
GTTATCAACGGTCAAAGGCGCCTGGTGAAGTAAGGATTGGGCAAGGGCTG ATGTAAGTACGTATGTATCTGCCACGCAATGACGTGGTAGTGGCTGTGTC GCCTCGCATCGTGGGCATATGGACAGGGAAAAACAAGAAGGGTGCACCTG AGAAGAGGAGAGATGGTGGTAGGGCTCATCTCAACCCGTTCCTCTCGACC TCCCCTGTTCAAGGAAGCAGACACCAGCTCAGGTGGTTCCAGTCTCATCC ATTCATGTGCAGGTCCTCCCATGGACAGCACTAGCAAACAGATAAGGAAA GTGGGCGTATTTGAAGGACCTAGCCCTGCCATAGTGCTTTCCAAAAGAGC TACGCGCCTGCCTTCTTCGCCCCTACCCCTGTCACCACCCCCAATCCTTT TCGGGGCGGCTTGCTTCTCCAAACCCCAGCTGCAAATTGTGCGCTGTCCC TCATCCTCGACGGCAATAAAAGCTATGAAAAGCATGAAAGGGTGACATAA GGGGATCATGCTCGAGGCAAGAGTCGAGGGACATTGTTTTAGAAGAGGCG ATGTGACCAGACACCACCTGACACCTCCGAGCCTGCATCAGCAACATGTG GCAAGCACTGAGGACTCGCACACACCCCGCCAACGCGTACACATACATAT TCGCACACACACAGAATCCTCTCTCCGCTCCTCACCATGTCTGGTGTTCT GGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGGTTAGTG TCGTGTTGCTGACACAGCAGGGTGGGAAAGGCCGCTCACATGGAGCACAG ACAGGGATGAATCGGTAACTTAGTGCCATCATTCAATCTTTTTTAAGGCA TATTTTCACTTCGATTGTCCATGATAGTCATAAAACGAAGCCGTCAACCT GTTTCTTCCTTGCCCTTCTTCCTACACAGCTCCACCGCTCCGGCGACCGC CACGACTTCATCCAGCTCACGGCCCAAGTCCTTCTGACAGTACGTGCCTT AACGTGAATCTTTGTGATCTTTAACTGTCATTGTCATGCATAGTCGGGGC ATTGATACAACTTCCCTTTTTCCTTGCACTATGATGTCGACCCTTGTCCC TGACACACATTTCTCCTTCTCTTATACCTTTTTTTCTTCTCCAAAAACAG GGTGGCTGTGAAGACGCCTTCATCAAGGCTGATAACCGGAACATCGTCGC GACGGATACGTGCAAAAACACCATCTACGTTCTAGCCCGTCGACACCACT TTGCCTCGATCGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTTGCT CAATACCCGAATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGACCT GTGGACCCGCGTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGCACA ACCACGCCTTTGTAAAGGTTGGTCCTCAGAATACCTACACGCAGTAAGTG AAGAAAAGGGGGGGGGGGGGATGGGATGGGGGCTGTGGTTGGAAGAAAAC GTGTTAAAGAATAGCGGCCGTTTATTGGTGGTTTTCTGCCTTGACATATT CTTTTCTCCCATTCATACGCGCAGCGTAACAGCGGAAAAAGTGGGTGGCT CCGTCAACGTCTCCGTCCGTTCAGGTACATACATTCTACTCCCGATGTCG TGTTTTTTTCACCCCCTCACTCCCCCCCACCTCATCGTCACCTCATCATC ACCATCACAAACAGGCGTTCGGTCCTTGATTCTCCTCAAGACGACTCAGT CTGGGTTCGAGAACTTTCACCGGGACGAATTCAGGGCATTGGGCGACACG AACGATCGCCTTGTTGGCACCTCCATCGACGGCGAATGGACGTTCACCCC TACTGCAATTGCCTCCAGTCCGGATTATGAGATGCTTAACAAGCTGGTGG TAGATACCCTGATTGATGAATTTGCAGGACCTGCGGATAAGGGCGTGTAT AGCGTCTCGGTCCAGCAGACGCTTTATGACATGGGCACGGGCTTGCTGGC GAAGGTGCCGGGGGTGGATAAAATTGAACTCTACATGGTGCGTTTTCTTC CTCCCATCCTTTTATTCACAGTCCATTTCTATCGAGTGTACTGACTGAGT GCCCCATTTCCATTCTTTTGAAAAATATCAATTGCTTCTTACCTTTCTCC TTCTCTCCCTCTCTCTCAATTCACCCAGCCCAACATCCACAACATCCCCG TGGATCTGTCCAAGTTCAAGATGGAAAACAAGGACCATACGGGCAAGCCC GACATTTTCCTGCCTACCAGCGACCCGCACGGGATGATCAAAGCTGTGAT CGAGCGACCTCGCAGCGCCCGCCTTTAAAATGACGTGTTGAATAAAGAGT GGAGGTCAGAGATCTTTGCGGTGTGATAAAATAAGTGGCTGTGCCCATGG GGTGTGCCTGCCTGTGTTCGTTTACGTTAAAGAGGCGAGAGCGCGAGACA GCGAATGAGAAGGACAATGAAGGAAAGAAGGAGAAAAAGTCTGACAGCTA AAAGACGACGAATGGAAATATAGAAAGGACCTAGGAGGAGGACTAGCAGG GAACAGTTTGGGAAGGGCCGAATCAGGCCCACTTTCAGGCTCAGGTCCCA TTTTCTTCAACTAAATATATGCTGAGCTAAGGTGCAGAATTGTGACAGGA CGGAGACGCAAACGTGCGCATACGCACATACACGCACAAACCTTAAAAGT CCAAAACCGATTGACTGGAAGTAACCCCACCCCCCGCAAAAAAAAAACGA AAACACTCAGAGACATAC
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Coding sequence (CDS) from alignment at chr2:775960..778727+

>NO02G02880.2 ID=NO02G02880.2|Name=NO02G02880.2|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr2:775960..778727+ (Nannochloropsis oceanica)
ATGTCTGGTGTTCTGGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACT
CCTTAAGCTCCACCGCTCCGGCGACCGCCACGACTTCATCCAGCTCACGG
CCCAAGTCCTTCTGACAGGTGGCTGTGAAGACGCCTTCATCAAGGCTGAT
AACCGGAACATCGTCGCGACGGATACGTGCAAAAACACCATCTACGTTCT
AGCCCGTCGACACCACTTTGCCTCGATCGAAGAGTTTGGAATCATCGTTG
CCAAGCACTTCCTTGCTCAATACCCGAATATCGTTTACAAGGCGGACATT
CAGCTCGTCAAGGACCTGTGGACCCGCGTGGTGAATAAGGATTCTCACGG
TCGGATAGCTCAGCACAACCACGCCTTTGTAAAGGTTGGTCCTCAGAATA
CCTACACGCACGTAACAGCGGAAAAAGTGGGTGGCTCCGTCAACGTCTCC
GTCCGTTCAGGTACATACATTCTACTCCCGATGTCGTGTTTTTTTCACCC
CCTCACTCCCCCCCACCTCATCGTCACCTCATCATCACCATCACAAACAG
GCGTTCGGTCCTTGATTCTCCTCAAGACGACTCAGTCTGGGTTCGAGAAC
TTTCACCGGGACGAATTCAGGGCATTGGGCGACACGAACGATCGCCTTGT
TGGCACCTCCATCGACGGCGAATGGACGTTCACCCCTACTGCAATTGCCT
CCAGTCCGGATTATGAGATGCTTAACAAGCTGGTGGTAGATACCCTGATT
GATGAATTTGCAGGACCTGCGGATAAGGGCGTGTATAGCGTCTCGGTCCA
GCAGACGCTTTATGACATGGGCACGGGCTTGCTGGCGAAGGTGCCGGGGG
TGGATAAAATTGAACTCTACATGCCCAACATCCACAACATCCCCGTGGAT
CTGTCCAAGTTCAAGATGGAAAACAAGGACCATACGGGCAAGCCCGACAT
TTTCCTGCCTACCAGCGACCCGCACGGGATGATCAAAGCTGTGATCGAGC
GACCTCGCAGCGCCCGCCTTTAA
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Synonyms
Publications